Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 2.4e-287 991.5 511 100.0
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 2.1e-235 818.9 515 84.3
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 2.7e-230 802.0 515 83.1
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 2.7e-185 652.5 521 68.1
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 5.0e-184 648.3 520 67.5
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 7.5e-180 634.4 517 66.9
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 1.3e-168 597.0 605 57.2
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 1.8e-141 506.9 524 53.6
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 1.9e-138 496.9 517 52.4
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 6.0e-137 491.9 520 53.3
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 1.0e-136 491.1 518 52.7
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 1.4e-133 480.7 519 51.8
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 1.2e-129 467.6 440 56.6
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 4.3e-127 459.1 516 50.6
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 4.8e-126 455.7 446 55.8
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 1.4e-125 454.1 517 50.1
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 5.3e-125 452.2 532 49.4
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 1.5e-124 450.7 528 49.6
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 2.6e-124 449.9 518 46.3
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 4.2e-122 442.6 453 54.3
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 2.7e-121 439.9 517 48.2
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 3.5e-121 439.5 516 48.3
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 3.5e-121 439.5 520 47.7
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 7.9e-121 438.3 486 51.6
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 1.3e-120 437.6 519 48.9
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 2.5e-119 433.3 518 48.6
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 2.1e-118 430.3 426 54.7
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 2.1e-118 430.3 518 48.3
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 1.1e-117 427.9 450 53.3
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 1.1e-117 427.9 465 50.3
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 3.1e-117 426.4 498 48.4
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 9.0e-117 424.9 435 53.8
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 2.0e-116 423.7 482 47.9
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 4.5e-116 422.5 438 50.5
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 4.5e-116 422.5 438 50.7
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 5.8e-116 422.2 445 52.6
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 4.9e-115 419.1 480 47.5
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 1.1e-114 417.9 520 46.7
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 1.1e-114 417.9 435 50.6
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 1.4e-114 417.5 519 48.4
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 1.9e-114 417.2 454 53.1
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 2.4e-114 416.8 516 50.0
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.2e-114 416.0 441 49.9
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 1.2e-113 414.5 436 52.3
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 2.1e-113 413.7 436 52.3
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 2.7e-113 413.3 447 51.9
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 2.7e-113 413.3 436 50.5
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 6.0e-113 412.1 520 46.2
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 6.0e-113 412.1 438 49.5
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 2.3e-112 410.2 436 52.1
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 2.3e-112 410.2 438 49.3
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 2.3e-112 410.2 437 51.7
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 5.1e-112 409.1 434 50.7
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 4.3e-111 406.0 421 53.7
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 2.1e-110 403.7 439 50.8
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 4.8e-110 402.5 529 45.6
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 8.2e-110 401.7 397 52.6
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 1.1e-109 401.4 488 47.1
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 2.4e-109 400.2 435 49.9
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 5.3e-109 399.1 437 49.4
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 2.6e-108 396.7 449 47.9
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 2.1e-105 387.1 520 44.6
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 7.9e-105 385.2 502 45.2
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 7.9e-105 385.2 502 45.2
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 7.9e-105 385.2 518 44.6
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 1.0e-104 384.8 435 49.4
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 1.0e-104 384.8 455 49.5
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 1.3e-104 384.4 466 44.4
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 1.8e-104 384.0 489 46.2
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 5.1e-104 382.5 502 45.0
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 9.7e-103 378.3 445 47.4
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 2.8e-102 376.7 445 47.2
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 3.7e-102 376.3 443 47.2
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 4.8e-102 375.9 468 46.4
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 2.4e-101 373.6 441 47.2
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 1.5e-100 370.9 502 43.2
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 3.4e-100 369.8 445 46.7
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 4.5e-100 369.4 447 46.3
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 4.5e-100 369.4 447 46.3
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 1.3e-99 367.9 439 45.8
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 2.2e-99 367.1 445 46.5
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 3.8e-99 366.3 448 45.3
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 6.5e-99 365.5 453 45.9
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 1.4e-98 364.4 440 45.7
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 3.2e-98 363.2 434 47.7
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 4.6e-97 359.4 473 44.0
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 7.9e-97 358.6 437 47.8
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 3.9e-96 356.3 335 54.6
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 7.4e-95 352.1 486 40.9
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 3.1e-93 346.7 434 43.3
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 3.2e-90 336.7 444 42.6
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 1.2e-89 334.7 444 40.8
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 8.8e-88 328.6 375 48.8
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 8.2e-86 322.0 545 36.7
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 5.5e-82 309.3 446 41.5
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 3.6e-81 306.6 289 55.0
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 1.8e-80 304.3 378 45.2
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 1.8e-80 304.3 396 45.2
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 3.9e-80 303.1 438 41.6
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 3.3e-79 300.1 377 41.9
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 1.2e-73 281.6 206 71.4
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 1.5e-71 274.6 476 36.6
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 2.8e-62 243.8 316 45.9
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 2.7e-60 237.3 188 63.3
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 5.0e-51 206.5 290 41.4
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 3.0e-48 197.2 446 32.3
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 5.2e-48 196.4 289 41.9
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 2.9e-46 190.7 471 33.3
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 1.8e-45 188.0 467 32.8
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 1.8e-45 188.0 268 39.9
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 3.2e-45 187.2 141 62.4
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 1.2e-44 185.3 456 30.3
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 2.0e-44 184.5 225 44.9
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 3.6e-33 147.1 124 60.5
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 6.2e-33 146.4 140 52.1
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 2.4e-29 134.4 119 56.3
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 9.2e-29 132.5 229 35.4
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 2.5e-26 124.4 186 39.8
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 4.3e-26 123.6 188 38.3
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.9e-22 110.2 127 44.1
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 7.6e-15 86.3 77 51.9
PRCOL_00001532 Prasinoderma coloniale HOM05D006020 ORTHO05D007665 3.5e-12 77.4 213 29.1
MBI16_g14988_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 5.6e-10 70.1 81 38.3
MBI12_g40856_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.3e-09 68.9 81 38.3
Os02g0515000 Oryza sativa ssp. japonica HOM05D006020 ORTHO05D007665 1.4e-08 65.5 154 33.1
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 5.8e-07 60.1 71 42.3


User provided reference genes

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