Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 2.4e-47 191.8 95 100.0
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 2.5e-36 155.2 88 83.0
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 5.3e-31 137.5 91 73.6
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 1.1e-28 129.8 92 71.7
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 5.5e-28 127.5 89 69.7
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 2.3e-26 122.1 86 64.0
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 6.7e-26 120.6 83 68.7
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 8.8e-26 120.2 96 59.4
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 4.4e-25 117.9 79 65.8
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 5.7e-25 117.5 79 65.8
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 1.7e-24 115.9 96 62.5
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 3.1e-23 111.7 92 52.2
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 4.1e-23 111.3 98 56.1
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 7.0e-23 110.5 83 62.7
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 7.0e-23 110.5 96 56.2
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 7.0e-23 110.5 81 63.0
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 7.0e-23 110.5 84 59.5
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 9.1e-23 110.2 85 58.8
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 2.0e-22 109.0 86 69.8
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 2.0e-22 109.0 94 55.3
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 4.5e-22 107.8 89 55.1
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 5.9e-22 107.5 90 56.7
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 7.7e-22 107.1 81 58.0
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 7.7e-22 107.1 64 70.3
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 1.0e-21 106.7 64 68.8
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 1.3e-21 106.3 89 50.6
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.3e-21 106.3 90 54.4
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.3e-21 106.3 85 57.6
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 2.9e-21 105.1 86 57.0
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 2.9e-21 105.1 73 64.4
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 5.0e-21 104.4 86 54.7
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 8.5e-21 103.6 62 71.0
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 1.1e-20 103.2 88 51.1
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 1.1e-20 103.2 85 60.0
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 5.5e-20 100.9 91 48.4
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 5.5e-20 100.9 95 53.7
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 9.4e-20 100.1 86 53.5
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 9.4e-20 100.1 86 53.5
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 9.4e-20 100.1 81 56.8
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 9.4e-20 100.1 86 53.5
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 9.4e-20 100.1 81 56.8
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 1.2e-19 99.8 94 50.0
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 1.2e-19 99.8 84 54.8
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.2e-19 99.8 83 53.0
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 1.6e-19 99.4 89 47.2
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 2.1e-19 99.0 88 53.4
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 2.1e-19 99.0 87 51.7
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 2.1e-19 99.0 81 58.0
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 4.7e-19 97.8 81 54.3
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 8.0e-19 97.1 85 54.1
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 1.0e-18 96.7 91 51.6
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 1.4e-18 96.3 85 54.1
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 1.8e-18 95.9 92 50.0
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 1.8e-18 95.9 81 55.6
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 1.8e-18 95.9 87 50.6
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 2.3e-18 95.5 92 50.0
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 2.3e-18 95.5 86 48.8
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 2.3e-18 95.5 80 50.0
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 4.0e-18 94.7 85 49.4
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 4.0e-18 94.7 93 50.5
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 5.2e-18 94.4 88 52.3
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 5.2e-18 94.4 89 50.6
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 5.2e-18 94.4 91 52.7
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 8.8e-18 93.6 85 50.6
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 8.8e-18 93.6 81 54.3
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 8.8e-18 93.6 87 49.4
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 1.2e-17 93.2 99 51.5
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 1.2e-17 93.2 87 50.6
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.2e-17 93.2 87 50.6
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 1.2e-17 93.2 80 56.2
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 1.2e-17 93.2 82 53.7
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.5e-17 92.8 89 49.4
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 1.5e-17 92.8 84 52.4
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 2.0e-17 92.4 107 45.8
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 2.0e-17 92.4 95 50.5
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 2.0e-17 92.4 84 51.2
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 2.6e-17 92.0 80 53.8
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 3.4e-17 91.7 82 53.7
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 4.4e-17 91.3 84 56.0
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 4.4e-17 91.3 76 56.6
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 5.7e-17 90.9 86 46.5
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 5.7e-17 90.9 86 50.0
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 5.7e-17 90.9 86 50.0
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 5.7e-17 90.9 63 58.7
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 7.5e-17 90.5 80 51.2
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 7.5e-17 90.5 87 55.2
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 9.8e-17 90.1 71 54.9
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 1.3e-16 89.7 80 55.0
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 1.3e-16 89.7 63 63.5
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 1.7e-16 89.4 69 55.1
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 2.2e-16 89.0 88 50.0
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 2.2e-16 89.0 85 50.6
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 2.2e-16 89.0 81 50.6
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 2.8e-16 88.6 95 46.3
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 4.8e-16 87.8 90 48.9
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 6.3e-16 87.4 90 48.9
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 1.1e-15 86.7 90 47.8
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 1.1e-15 86.7 90 47.8
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 1.1e-15 86.7 90 47.8
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 1.4e-15 86.3 86 48.8
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 1.8e-15 85.9 86 48.8
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 4.1e-15 84.7 61 57.4
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 5.4e-15 84.3 87 43.7
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 5.4e-15 84.3 88 47.7
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 9.1e-15 83.6 91 50.5
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 1.6e-14 82.8 84 52.4
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 2.0e-14 82.4 81 50.6
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 2.7e-14 82.0 80 46.2
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 4.5e-14 81.3 85 43.5
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 5.9e-14 80.9 52 65.4
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 5.0e-13 77.8 61 50.8
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 5.0e-13 77.8 85 45.9
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 6.5e-13 77.4 86 41.9
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 6.5e-13 77.4 86 41.9
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 6.5e-13 77.4 92 41.3
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 1.1e-12 76.6 61 50.8
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 1.1e-12 76.6 86 41.9
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 1.1e-12 76.6 86 41.9
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.5e-12 76.3 86 41.9
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 1.5e-12 76.3 61 50.8
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 1.9e-12 75.9 61 49.2
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 5.5e-12 74.3 93 43.0
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 5.5e-12 74.3 86 41.9
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 2.1e-11 72.4 83 42.2
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 2.8e-11 72.0 83 42.2
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 2.8e-11 72.0 83 42.2
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 4.7e-11 71.2 98 38.8
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 6.1e-11 70.9 91 37.4
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 6.1e-11 70.9 87 40.2
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.0e-10 70.1 91 38.5
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 1.4e-10 69.7 90 38.9
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 8.8e-10 67.0 89 41.6
Os09g0525500 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 3.7e-08 61.6 91 39.6
SEGI_28459 Sequoiadendron giganteum HOM05D005649 ORTHO05D006837 4.9e-08 61.2 84 38.1
Zm00001eb198610 Zea mays HOM05D005649 ORTHO05D006837 4.9e-08 61.2 99 35.4
Aa31LG2G14360 Aethionema arabicum HOM05D005649 ORTHO05D006837 4.1e-07 58.2 80 40.0
Zm00001eb319020 Zea mays HOM05D005649 ORTHO05D006837 5.4e-07 57.8 69 39.1
Os08g0546300 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 2.7e-06 55.5 62 38.7


User provided reference genes

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