Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 1.4e-184 649.4 329 100.0
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 3.0e-142 508.8 282 92.9
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 3.7e-140 501.9 282 91.5
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 6.4e-140 501.1 282 91.5
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.2e-122 443.7 286 80.8
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 6.6e-121 438.0 296 77.7
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 2.5e-120 436.0 263 83.7
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 1.4e-110 403.7 285 73.7
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 5.2e-110 401.7 282 73.4
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 2.4e-107 392.9 284 72.2
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 5.4e-107 391.7 286 71.3
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 7.8e-106 387.9 283 71.7
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 1.7e-105 386.7 231 84.4
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 1.1e-104 384.0 302 67.2
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 1.5e-104 383.6 231 84.8
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 1.5e-104 383.6 231 83.5
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 3.3e-104 382.5 266 73.3
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 1.3e-103 380.6 270 70.0
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 1.3e-103 380.6 280 70.7
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.6e-103 380.2 285 69.1
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 3.6e-103 379.0 288 68.4
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 4.8e-103 378.6 286 69.9
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 6.2e-103 378.3 281 69.0
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 6.2e-103 378.3 284 66.9
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 1.1e-102 377.5 256 73.0
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 1.4e-102 377.1 243 77.0
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 1.8e-102 376.7 243 77.0
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.8e-102 376.7 231 80.5
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 1.8e-102 376.7 284 68.3
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 1.8e-102 376.7 238 76.9
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 3.1e-102 375.9 282 68.8
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 4.0e-102 375.6 282 68.8
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 4.0e-102 375.6 281 68.7
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 5.3e-102 375.2 288 66.0
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 6.9e-102 374.8 286 69.9
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 1.2e-101 374.0 280 70.7
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 1.5e-101 373.6 231 81.4
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.5e-101 372.1 288 65.3
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 5.8e-101 371.7 281 69.8
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 5.8e-101 371.7 252 75.4
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 1.3e-100 370.5 231 80.5
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 1.3e-100 370.5 249 73.5
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.7e-100 370.2 288 64.9
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 2.2e-100 369.8 231 80.1
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 2.2e-100 369.8 285 67.4
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 2.2e-100 369.8 281 65.1
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.2e-100 369.8 272 71.0
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 3.8e-100 369.0 261 71.6
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 4.9e-100 368.6 284 66.9
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 6.4e-100 368.2 283 65.4
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 8.4e-100 367.9 278 68.0
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 8.4e-100 367.9 283 65.4
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 8.4e-100 367.9 233 80.7
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.9e-99 366.7 249 74.7
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 2.4e-99 366.3 231 79.7
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 2.4e-99 366.3 243 76.1
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 3.2e-99 365.9 232 77.6
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 4.2e-99 365.5 307 63.8
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 4.2e-99 365.5 247 74.1
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 7.1e-99 364.8 287 67.6
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 7.1e-99 364.8 229 79.0
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 9.3e-99 364.4 281 66.9
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 1.2e-98 364.0 236 76.7
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 2.1e-98 363.2 327 63.0
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 2.7e-98 362.8 260 70.8
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 3.5e-98 362.5 229 78.2
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 4.6e-98 362.1 284 66.9
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 6.0e-98 361.7 283 67.1
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 6.0e-98 361.7 236 76.7
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 1.0e-97 360.9 249 73.1
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 1.3e-97 360.5 291 65.6
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.3e-97 359.8 230 77.8
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 3.0e-97 359.4 268 67.2
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 3.0e-97 359.4 224 79.5
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 3.9e-97 359.0 271 66.4
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 8.7e-97 357.8 236 75.8
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 1.5e-96 357.1 236 76.3
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 1.5e-96 357.1 236 76.3
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 1.5e-96 357.1 236 76.3
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 1.5e-96 357.1 236 75.0
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 1.5e-96 357.1 237 75.9
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 1.9e-96 356.7 224 80.4
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 5.6e-96 355.1 272 67.6
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 7.4e-96 354.8 232 76.3
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 9.6e-96 354.4 287 63.1
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 2.1e-95 353.2 287 63.4
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.8e-95 352.1 276 64.9
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 4.8e-95 352.1 231 75.8
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 4.8e-95 352.1 239 73.6
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 2.4e-94 349.7 289 64.7
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 2.4e-94 349.7 289 64.7
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.4e-94 349.7 231 74.9
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.1e-94 349.4 237 73.8
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 3.1e-94 349.4 246 73.2
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 4.0e-94 349.0 237 75.5
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 5.3e-94 348.6 237 75.1
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 9.9e-93 344.4 231 73.2
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.1e-91 340.9 234 71.4
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.7e-90 336.3 288 61.1
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 3.5e-90 335.9 229 69.4
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 3.5e-90 335.9 233 70.4
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 6.0e-90 335.1 260 63.8
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 7.9e-90 334.7 235 69.4
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 6.7e-89 331.6 235 68.9
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 2.5e-88 329.7 233 70.0
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 9.6e-88 327.8 286 59.8
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 4.5e-85 318.9 245 67.8
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 1.4e-83 313.9 202 78.7
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 7.1e-83 311.6 230 68.3
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 9.3e-83 311.2 201 75.1
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 1.6e-82 310.5 201 79.1
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 2.1e-82 310.1 231 68.4
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 2.1e-82 310.1 229 69.9
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 3.5e-82 309.3 229 67.2
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 5.1e-81 305.4 199 76.4
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 6.7e-81 305.1 192 79.2
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 8.7e-81 304.7 199 73.4
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 1.1e-80 304.3 243 65.4
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 9.7e-80 301.2 201 73.6
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 2.2e-76 290.0 199 71.9
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 5.0e-76 288.9 229 64.6
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 1.1e-75 287.7 237 65.0
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 1.9e-75 287.0 240 62.9
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.2e-75 285.8 201 70.1
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 1.6e-74 283.9 227 66.1
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 1.3e-71 274.2 229 62.9
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.8e-70 270.4 167 81.4
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 2.6e-69 266.5 234 59.0
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 2.2e-68 263.5 307 49.8
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.9e-68 263.1 219 63.9
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 5.0e-68 262.3 222 63.1
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 7.2e-67 258.5 187 72.7
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 4.4e-64 249.2 191 66.5
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 1.1e-62 244.6 230 55.7
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 1.3e-60 237.7 236 54.7
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.4e-57 227.6 288 45.5
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 1.4e-54 217.6 146 76.0
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 7.7e-53 211.8 148 70.9
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.9e-51 207.2 137 71.5
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 1.2e-50 204.5 177 61.0
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.0e-44 184.9 131 68.7
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.9e-43 180.6 131 68.7
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.7e-39 166.4 133 63.9
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.4e-38 163.7 138 58.7
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.4e-38 163.7 138 58.7
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 9.1e-38 161.8 158 58.9
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.7e-34 149.4 119 64.7
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 3.0e-33 146.7 124 61.3
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 6.6e-28 129.0 157 47.8
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 5.6e-27 125.9 74 81.1
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.1e-26 124.0 74 79.7
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.8e-26 123.6 74 79.7
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 3.6e-26 123.2 74 79.7
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.4e-25 121.3 74 77.0
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 3.7e-23 113.2 192 36.5
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 5.4e-22 109.4 72 75.0
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 1.9e-19 100.9 90 58.9
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 9.5e-19 98.6 66 75.8
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 2.0e-16 90.9 65 75.4
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 5.8e-16 89.4 64 70.3
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 2.2e-15 87.4 68 67.6
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 1.3e-12 78.2 64 62.5
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 6.6e-12 75.9 44 79.5
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 7.3e-11 72.4 44 72.7
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 7.3e-11 72.4 64 59.4
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 9.5e-11 72.0 46 76.1
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 4.0e-09 66.6 62 56.5
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.2e-08 65.1 209 27.8
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 1.4e-06 58.2 66 42.4
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 5.4e-06 56.2 38 65.8
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 5.4e-06 56.2 38 65.8


User provided reference genes

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