Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 1.8e-73 279.6 196 100.0
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 1.2e-50 203.8 201 68.7
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 3.6e-50 202.2 201 68.2
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 1.1e-49 200.7 201 67.7
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 1.4e-41 173.7 193 56.5
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 4.5e-40 168.7 197 55.3
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.4e-38 163.7 189 55.6
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 1.4e-38 163.7 187 55.1
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 7.9e-37 157.9 193 61.1
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 8.7e-36 154.5 201 59.2
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 9.6e-35 151.0 195 45.6
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 1.6e-34 150.2 157 53.5
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 1.6e-34 150.2 157 58.6
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 1.4e-33 147.1 157 53.5
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 1.8e-33 146.7 157 53.5
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 4.0e-33 145.6 195 43.6
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 5.3e-33 145.2 184 45.7
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 9.0e-33 144.4 189 55.0
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 4.5e-32 142.1 164 56.1
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 5.8e-32 141.7 157 59.2
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 5.8e-32 141.7 195 44.1
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 9.9e-32 141.0 157 52.2
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 1.7e-31 140.2 158 48.7
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 2.2e-31 139.8 157 50.3
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 2.2e-31 139.8 161 49.1
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 2.2e-31 139.8 161 49.7
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 3.8e-31 139.0 157 56.1
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 4.9e-31 138.7 157 48.4
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 4.9e-31 138.7 196 41.3
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 4.9e-31 138.7 196 48.0
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 6.4e-31 138.3 164 59.1
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 8.4e-31 137.9 196 50.5
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 8.4e-31 137.9 157 55.4
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 1.4e-30 137.1 161 49.1
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 1.9e-30 136.7 155 49.0
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 5.5e-30 135.2 157 59.2
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 5.5e-30 135.2 154 59.1
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 5.5e-30 135.2 157 58.0
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 7.1e-30 134.8 166 44.0
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 1.2e-29 134.0 185 48.6
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 1.2e-29 134.0 164 44.5
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 2.7e-29 132.9 157 58.6
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 3.5e-29 132.5 156 59.0
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 3.5e-29 132.5 164 43.9
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 6.0e-29 131.7 157 58.0
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 7.9e-29 131.3 157 47.8
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 2.3e-28 129.8 201 53.7
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 3.0e-28 129.4 156 49.4
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 3.9e-28 129.0 194 42.8
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 3.9e-28 129.0 194 42.8
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 5.1e-28 128.6 196 41.3
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 5.1e-28 128.6 164 45.7
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 8.7e-28 127.9 157 46.5
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.1e-27 127.5 157 54.8
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.1e-27 127.5 157 54.8
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 1.5e-27 127.1 151 48.3
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 1.9e-27 126.7 196 41.8
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 1.9e-27 126.7 196 41.8
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 3.3e-27 125.9 196 41.3
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 3.3e-27 125.9 196 41.8
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 5.6e-27 125.2 157 54.8
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 5.6e-27 125.2 164 56.7
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 9.6e-27 124.4 164 45.1
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 9.6e-27 124.4 153 47.7
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 1.3e-26 124.0 192 60.4
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 1.6e-26 123.6 194 47.4
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 2.8e-26 122.9 157 45.2
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 1.1e-25 120.9 164 51.8
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 1.4e-25 120.6 164 43.9
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 1.4e-25 120.6 211 45.0
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 1.8e-25 120.2 194 47.4
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 1.8e-25 120.2 164 53.0
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 2.4e-25 119.8 193 50.8
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 9.0e-25 117.9 168 48.2
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 2.0e-24 116.7 195 47.2
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 3.4e-24 115.9 223 41.3
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 4.5e-24 115.5 208 38.5
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 7.6e-24 114.8 155 52.3
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 1.0e-23 114.4 188 44.7
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 2.9e-23 112.8 150 57.3
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 3.8e-23 112.5 155 54.2
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 1.1e-22 110.9 155 42.6
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 1.1e-22 110.9 152 44.7
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 1.1e-22 110.9 162 61.1
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 1.9e-22 110.2 157 43.3
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 2.5e-22 109.8 162 41.4
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 2.5e-22 109.8 152 44.1
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 4.2e-22 109.0 193 56.0
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 7.1e-22 108.2 150 55.3
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 1.6e-21 107.1 176 36.4
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 2.1e-21 106.7 196 42.3
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 2.1e-21 106.7 193 49.7
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 4.6e-21 105.5 186 48.9
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 1.0e-20 104.4 155 54.2
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 2.3e-20 103.2 149 41.6
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 3.9e-20 102.4 149 41.6
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 3.9e-20 102.4 158 50.6
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 6.7e-20 101.7 157 58.0
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 8.7e-20 101.3 102 55.9
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 8.7e-20 101.3 157 49.7
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 1.5e-19 100.5 181 38.1
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 2.2e-18 96.7 150 53.3
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 2.8e-18 96.3 157 52.2
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 3.7e-18 95.9 166 38.0
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 6.3e-18 95.1 150 39.3
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 8.2e-18 94.7 124 58.9
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 1.8e-17 93.6 197 54.3
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 2.4e-17 93.2 153 51.6
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 2.4e-17 93.2 153 51.6
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 4.1e-17 92.4 149 45.0
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 6.9e-17 91.7 164 42.1
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 9.0e-17 91.3 151 47.7
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 2.6e-16 89.7 168 48.8
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 3.4e-16 89.4 186 46.8
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 2.2e-15 86.7 143 49.0
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 5.5e-14 82.0 164 40.9
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 7.2e-14 81.6 140 40.7
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 1.2e-13 80.9 157 54.8
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 3.6e-13 79.3 95 50.5
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 3.6e-13 79.3 167 46.1
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 6.1e-13 78.6 92 64.1
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 6.1e-13 78.6 184 32.6
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 3.9e-12 75.9 160 45.6
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 1.5e-11 73.9 162 53.7
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 2.2e-10 70.1 108 36.1
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 4.8e-10 68.9 95 62.1
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 6.3e-10 68.6 107 57.9
arahy.Tifrunner.gnm1.ann1.W60CWR Arachis hypogaea HOM05D005061 ORTHO05D006001 1.1e-09 67.8 114 54.4
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 1.1e-09 67.8 193 42.5
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.8e-09 67.0 57 66.7
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 4.1e-09 65.9 58 56.9
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.5e-08 63.9 176 33.5
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.5e-08 63.9 176 33.5
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 2.0e-08 63.5 150 39.3
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 4.5e-08 62.4 95 64.2
arahy.Tifrunner.gnm1.ann1.L4TH9M Arachis hypogaea HOM05D005061 ORTHO05D006001 1.0e-07 61.2 113 54.0
Lj3P401T12 Lonicera japonica HOM05D005061 ORTHO05D006001 1.3e-07 60.8 38 65.8
arahy.Tifrunner.gnm1.ann1.125U9W Arachis hypogaea HOM05D005061 ORTHO05D006001 5.5e-06 55.5 104 39.4
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 9.4e-06 54.7 148 26.4


User provided reference genes

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