Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G764.4 Capsicum annuum HOM05D007025 ORTHO05D008862 1.3e-41 172.6 81 100.0
Solyc11g066070.2 Solanum lycopersicum HOM05D007025 ORTHO05D008862 1.1e-40 169.5 81 97.5
Sopen11g025810 Solanum pennellii HOM05D007025 ORTHO05D008862 1.1e-40 169.5 81 97.5
PGSC0003DMG400000442 Solanum tuberosum HOM05D007025 ORTHO05D008862 1.1e-40 169.5 81 97.5
Nitab4.5_0001800g0060 Nicotiana tabacum HOM05D007025 ORTHO05D008862 2.4e-40 168.3 81 96.3
Peaxi162Scf00406g00059 Petunia axillaris HOM05D007025 ORTHO05D008862 7.0e-40 166.8 81 95.1
Nitab4.5_0004078g0030 Nicotiana tabacum HOM05D007025 ORTHO05D008862 1.2e-39 166.0 81 95.1
Solyc06g076010.3 Solanum lycopersicum HOM05D007025 ORTHO05D008862 1.8e-35 152.1 81 86.4
Sopen06g032420 Solanum pennellii HOM05D007025 ORTHO05D008862 1.8e-35 152.1 81 86.4
EL10Ac7g15997 Beta vulgaris HOM05D007025 ORTHO05D008862 3.7e-33 144.4 81 81.5
ClCG08G009640 Citrullus lanatus HOM05D007025 ORTHO05D008862 1.4e-32 142.5 81 77.8
CSS0049041 Camellia sinensis var. sinensis HOM05D007025 ORTHO05D008862 9.2e-32 139.8 81 77.8
TAR374G1462 Trochodendron aralioides HOM05D007025 ORTHO05D008862 1.2e-31 139.4 81 76.5
Thecc.09G323800 Theobroma cacao HOM05D007025 ORTHO05D008862 2.0e-31 138.7 81 77.8
Eucgr.J02059 Eucalyptus grandis HOM05D007025 ORTHO05D008862 2.7e-31 138.3 81 79.0
Sed0024062 Sechium edule HOM05D007025 ORTHO05D008862 2.7e-31 138.3 81 76.5
Cc01_g12710 Coffea canephora HOM05D007025 ORTHO05D008862 4.5e-31 137.5 81 76.5
Gohir.A03G041000 Gossypium hirsutum HOM05D007025 ORTHO05D008862 1.3e-30 136.0 81 79.0
CsaV3_6G031770 Cucumis sativus L. HOM05D007025 ORTHO05D008862 2.3e-30 135.2 81 74.1
Gohir.D03G127100 Gossypium hirsutum HOM05D007025 ORTHO05D008862 2.3e-30 135.2 81 77.8
Gorai.003G133500 Gossypium raimondii HOM05D007025 ORTHO05D008862 2.3e-30 135.2 81 77.8
PGR102G0249 Punica granatum HOM05D007025 ORTHO05D008862 2.9e-30 134.8 81 76.5
Ciclev10003169m.g Citrus clementina HOM05D007025 ORTHO05D008862 5.0e-30 134.0 81 74.1
MELO3C026555.2 Cucumis melo HOM05D007025 ORTHO05D008862 5.0e-30 134.0 81 74.1
SGA_v2.0_scaffold118G32439 Striga asiatica HOM05D007025 ORTHO05D008862 6.6e-30 133.7 82 76.8
Hma1.2p1_1888F.1_g306550 Hydrangea macrophylla HOM05D007025 ORTHO05D008862 8.6e-30 133.3 81 74.1
Prupe.6G079900 Prunus persica HOM05D007025 ORTHO05D008862 8.6e-30 133.3 81 72.8
CiPaw.09G091100 Carya illinoinensis HOM05D007025 ORTHO05D008862 1.1e-29 132.9 81 72.8
Duzib168G1407 Durio zibethinus HOM05D007025 ORTHO05D008862 1.1e-29 132.9 81 76.5
Lsat_1_v5_gn_2_83821 Lactuca sativa HOM05D007025 ORTHO05D008862 1.1e-29 132.9 81 70.4
vmacro00530 Vaccinium macrocarpon HOM05D007025 ORTHO05D008862 1.1e-29 132.9 81 75.3
GSVIVG01024988001 Vitis vinifera HOM05D007025 ORTHO05D008862 1.5e-29 132.5 81 72.8
Lsat_1_v5_gn_5_79400 Lactuca sativa HOM05D007025 ORTHO05D008862 2.5e-29 131.7 81 69.1
CiPaw.13G095900 Carya illinoinensis HOM05D007025 ORTHO05D008862 5.6e-29 130.6 81 71.6
CANSAT54G1063 Cannabis sativa HOM05D007025 ORTHO05D008862 7.3e-29 130.2 81 74.1
Hund04979 Selenicereus undatus HOM05D007025 ORTHO05D008862 1.6e-28 129.0 81 74.1
TWI79G0521 Tripterygium wilfordii HOM05D007025 ORTHO05D008862 1.6e-28 129.0 81 69.1
Rhsim09G0044100 Rhododendron simsii HOM05D007025 ORTHO05D008862 2.8e-28 128.3 81 71.6
arahy.Tifrunner.gnm1.ann1.XVFR0N Arachis hypogaea HOM05D007025 ORTHO05D008862 3.6e-28 127.9 81 70.4
Aqoxy1G00724 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 4.7e-28 127.5 81 70.4
Manes.04G033800 Manihot esculenta HOM05D007025 ORTHO05D008862 6.1e-28 127.1 81 70.4
COL.COLO4_20470 Corchorus olitorius HOM05D007025 ORTHO05D008862 1.0e-27 126.3 81 71.6
arahy.Tifrunner.gnm1.ann1.UND1EB Arachis hypogaea HOM05D007025 ORTHO05D008862 1.4e-27 125.9 81 69.1
Cpa.g.sc840.2 Carica papaya HOM05D007025 ORTHO05D008862 1.4e-27 125.9 81 69.1
CiPaw.14G069900 Carya illinoinensis HOM05D007025 ORTHO05D008862 1.4e-27 125.9 81 69.1
unitig_749.g14331 Utricularia gibba HOM05D007025 ORTHO05D008862 1.8e-27 125.6 81 69.1
Glyma.08G088800 Glycine max HOM05D007025 ORTHO05D008862 2.3e-27 125.2 81 70.4
QL06p002232 Quercus lobata HOM05D007025 ORTHO05D008862 2.3e-27 125.2 80 68.8
Haze_24077 Corylus avellana HOM05D007025 ORTHO05D008862 3.0e-27 124.8 80 71.2
Aa31sc152G30 Aethionema arabicum HOM05D007025 ORTHO05D008862 4.0e-27 124.4 81 69.1
AL1G53430 Arabidopsis lyrata HOM05D007025 ORTHO05D008862 4.0e-27 124.4 81 70.4
AT1G47278 Arabidopsis thaliana HOM05D007025 ORTHO05D008862 4.0e-27 124.4 81 70.4
CARHR036850 Cardamine hirsuta HOM05D007025 ORTHO05D008862 4.0e-27 124.4 82 70.7
ECA238G2407 Erigeron canadensis HOM05D007025 ORTHO05D008862 4.0e-27 124.4 81 66.7
Aqoxy7G01971 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 5.2e-27 124.0 81 67.9
Cfa003375 Carpinus fangiana HOM05D007025 ORTHO05D008862 5.2e-27 124.0 81 71.6
Glyma.05G134100 Glycine max HOM05D007025 ORTHO05D008862 5.2e-27 124.0 81 69.1
Carub.0001s3607 Capsella rubella HOM05D007025 ORTHO05D008862 6.8e-27 123.6 81 67.9
Phvul.002G188200 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 8.9e-27 123.2 81 69.1
QL10p005425 Quercus lobata HOM05D007025 ORTHO05D008862 1.5e-26 122.5 80 67.5
FvH4_3g35770 Fragaria vesca HOM05D007025 ORTHO05D008862 2.0e-26 122.1 81 72.8
FAN11G3513 Fragaria x ananassa HOM05D007025 ORTHO05D008862 2.0e-26 122.1 81 72.8
FAN16G3493 Fragaria x ananassa HOM05D007025 ORTHO05D008862 2.0e-26 122.1 81 72.8
FAN25G2181 Fragaria x ananassa HOM05D007025 ORTHO05D008862 2.0e-26 122.1 81 72.8
Migut.C01196 Erythranthe guttata HOM05D007025 ORTHO05D008862 2.6e-26 121.7 81 69.1
Nn5g26960 Nelumbo nucifera HOM05D007025 ORTHO05D008862 2.6e-26 121.7 82 69.5
RcHm_v2.0_Chr5g0006711 Rosa chinensis HOM05D007025 ORTHO05D008862 3.4e-26 121.3 81 72.8
RcHm_v2.0_Chr5g0063941 Rosa chinensis HOM05D007025 ORTHO05D008862 3.4e-26 121.3 81 72.8
THA.LOC104810785 Tarenaya hassleriana HOM05D007025 ORTHO05D008862 3.4e-26 121.3 81 66.7
ATR0800G159 Amborella trichopoda HOM05D007025 ORTHO05D008862 1.3e-25 119.4 79 68.4
FAN21G1635 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.3e-25 119.4 81 71.6
Phvul.007G101100 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 1.3e-25 119.4 81 67.9
Thhalv10011908m.g Eutrema salsugineum HOM05D007025 ORTHO05D008862 4.9e-25 117.5 81 67.9
Atru.chr3.3859 Acer truncatum HOM05D007025 ORTHO05D008862 1.4e-24 115.9 81 64.2
PSO384G2653 Papaver somniferum HOM05D007025 ORTHO05D008862 1.4e-24 115.9 81 64.2
Sp1g34420 Schrenkiella parvula HOM05D007025 ORTHO05D008862 3.2e-24 114.8 81 66.7
Lalb_Chr12g0209181 Lupinus albus HOM05D007025 ORTHO05D008862 4.1e-24 114.4 81 64.2
Medtr4g094750 Medicago truncatula HOM05D007025 ORTHO05D008862 5.4e-24 114.0 81 61.7
Psat7g087480 Pisum sativum HOM05D007025 ORTHO05D008862 5.4e-24 114.0 81 61.7
BcaB04g17532 Brassica carinata HOM05D007025 ORTHO05D008862 7.0e-24 113.6 81 65.4
Lalb_Chr12g0209151 Lupinus albus HOM05D007025 ORTHO05D008862 9.2e-24 113.2 81 64.2
BcaC07g37223 Brassica carinata HOM05D007025 ORTHO05D008862 1.6e-23 112.5 81 64.2
A08p05760 Brassica napus HOM05D007025 ORTHO05D008862 1.6e-23 112.5 81 64.2
C08p06430 Brassica napus HOM05D007025 ORTHO05D008862 1.6e-23 112.5 81 64.2
BraA08t32579Z Brassica rapa HOM05D007025 ORTHO05D008862 1.6e-23 112.5 81 64.2
PGSC0003DMG400030317 Solanum tuberosum HOM05D007025 ORTHO05D008862 5.9e-23 110.5 57 84.2
CDE11G0504 Ceratophyllum demersum HOM05D007025 ORTHO05D008862 3.9e-22 107.8 81 64.2
Lj1g0011371 Lotus japonicus HOM05D007025 ORTHO05D008862 1.1e-21 106.3 81 60.5
Lj4g0013158 Lotus japonicus HOM05D007025 ORTHO05D008862 1.1e-21 106.3 81 60.5
Os03g0276700 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 5.6e-21 104.0 79 62.0
SalBow5G5439 Salvia bowleyana HOM05D007025 ORTHO05D008862 5.6e-21 104.0 76 61.8
TPR.G23830 Trifolium pratense HOM05D007025 ORTHO05D008862 1.2e-20 102.8 79 58.2
Lj1A680T12 Lonicera japonica HOM05D007025 ORTHO05D008862 1.6e-20 102.4 58 77.6
Os08g0422300 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 1.6e-20 102.4 79 62.0
SHI05954 Sapria himalayana HOM05D007025 ORTHO05D008862 2.3e-19 98.6 78 53.8
MBI05_g06554_MAGBIO Magnolia biondii HOM05D007025 ORTHO05D008862 1.4e-16 89.4 72 52.8
unitig_26.g9279 Utricularia gibba HOM05D007025 ORTHO05D008862 3.2e-16 88.2 57 66.7
FAN24G0628 Fragaria x ananassa HOM05D007025 ORTHO05D008862 9.2e-16 86.7 63 69.8
Potri.009G029400 Populus trichocarpa HOM05D007025 ORTHO05D008862 9.2e-16 86.7 81 49.4
BolC8t47490H Brassica oleracea HOM05D007025 ORTHO05D008862 1.6e-15 85.9 70 55.7
AUR62001808 Chenopodium quinoa HOM05D002150 ORTHO05D002191 2.0e-15 85.5 47 83.0
AUR62009594 Chenopodium quinoa HOM05D007025 ORTHO05D002191 2.0e-15 85.5 47 83.0
MD11G1111500 Malus domestica HOM05D007025 ORTHO05D008862 3.5e-15 84.7 58 69.0
HanXRQChr14g0439311 Helianthus annuus HOM05D007025 ORTHO05D008862 6.0e-15 84.0 78 51.3
MD02G1271300 Malus domestica HOM05D007025 ORTHO05D008862 7.8e-15 83.6 58 69.0
Mapoly0032s0020 Marchantia polymorpha HOM05D007025 ORTHO05D008862 3.6e-12 74.7 80 45.0
AagrBONN_evm.TU.Sc2ySwM_344.5329 Anthoceros agrestis HOM05D007025 ORTHO05D008862 1.1e-11 73.2 77 46.8
SGA_v2.0_scaffold24G10508 Striga asiatica HOM05D007025 ORTHO05D008862 1.1e-11 73.2 65 56.9
Pp3c21_6850 Physcomitrium patens HOM05D007025 ORTHO05D008862 6.8e-11 70.5 80 42.5
COL.COLO4_18491 Corchorus olitorius HOM05D007025 ORTHO05D008862 1.5e-10 69.3 77 51.9
SEGI_34612 Sequoiadendron giganteum HOM05D007025 ORTHO05D008862 1.3e-09 66.2 56 50.0
MD02G1271100 Malus domestica HOM05D007025 ORTHO05D008862 4.1e-08 61.2 45 55.6
FvH4_2g11050 Fragaria vesca HOM05D007025 ORTHO05D008862 2.7e-07 58.5 42 64.3


User provided reference genes

Program Settings