Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G761.14 Capsicum annuum HOM05D002060 ORTHO05D002098 4.5e-68 261.2 133 100.0
CAN.G860.3 Capsicum annuum HOM05D002060 ORTHO05D002098 2.5e-55 218.8 142 81.7
CAN.G979.6 Capsicum annuum HOM05D002060 ORTHO05D002098 7.4e-55 217.2 142 81.7
Sopen02g016290 Solanum pennellii HOM05D002060 ORTHO05D002098 1.8e-45 186.0 143 74.1
Solyc02g067100.3 Solanum lycopersicum HOM05D002060 ORTHO05D002098 3.1e-45 185.3 143 74.1
Solyc02g094750.1 Solanum lycopersicum HOM05D002060 ORTHO05D002098 2.0e-44 182.6 145 71.7
PGSC0003DMG400025148 Solanum tuberosum HOM05D002060 ORTHO05D002098 7.7e-44 180.6 142 73.2
CAN.G398.9 Capsicum annuum HOM05D002060 ORTHO05D002098 4.4e-39 164.9 138 71.0
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.4e-37 159.8 144 69.4
PGSC0003DMG400025143 Solanum tuberosum HOM05D002060 ORTHO05D002098 2.2e-35 152.5 138 65.2
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.2e-31 140.2 138 63.0
Sopen02g016180 Solanum pennellii HOM05D002060 ORTHO05D002098 2.0e-31 139.4 138 60.1
PGSC0003DMG400019384 Solanum tuberosum HOM05D002060 ORTHO05D002098 6.5e-27 124.4 103 70.9
Peaxi162Scf00629g00419 Petunia axillaris HOM05D002060 ORTHO05D002098 4.7e-25 118.2 142 54.2
Solyc02g066980.1 Solanum lycopersicum HOM05D002060 ORTHO05D002098 4.5e-20 101.7 142 47.2
Cc07_g03980 Coffea canephora HOM05D002060 ORTHO05D002098 1.8e-16 89.7 129 51.9
Dinv33820 Davidia involucrata HOM05D002060 ORTHO05D002098 6.3e-14 81.3 155 46.5
Peaxi162Scf00166g00531 Petunia axillaris HOM05D002060 ORTHO05D002098 1.8e-13 79.7 107 47.7
CSS0010449 Camellia sinensis var. sinensis HOM05D002060 ORTHO05D002098 2.4e-13 79.3 119 46.2
Lsat_1_v5_gn_2_87661 Lactuca sativa HOM05D002060 ORTHO05D002098 3.2e-13 79.0 114 49.1
Lsat_1_v5_gn_4_170421 Lactuca sativa HOM05D002060 ORTHO05D002098 5.4e-13 78.2 127 45.7
Oeu023713.2 Olea europaea HOM05D002060 ORTHO05D002098 5.4e-13 78.2 134 45.5
PGR004G2324 Punica granatum HOM05D002060 ORTHO05D002098 5.4e-13 78.2 105 43.8
Lju41A4T69 Lonicera japonica HOM05D002060 ORTHO05D002098 7.0e-13 77.8 131 42.0
HanXRQChr17g0551801 Helianthus annuus HOM05D002060 ORTHO05D002098 9.2e-13 77.4 123 43.1
TWI60G0152 Tripterygium wilfordii HOM05D002060 ORTHO05D002098 9.2e-13 77.4 101 48.5
CANSAT64G1295 Cannabis sativa HOM05D002060 ORTHO05D002098 2.0e-12 76.3 102 52.0
Manes.01G097800 Manihot esculenta HOM05D002060 ORTHO05D002098 2.0e-12 76.3 132 41.7
Hma1.2p1_0481F.1_g161980 Hydrangea macrophylla HOM05D002060 ORTHO05D002098 2.7e-12 75.9 105 50.5
Migut.H00641 Erythranthe guttata HOM05D002060 ORTHO05D002098 3.5e-12 75.5 107 48.6
CSS0004087 Camellia sinensis var. sinensis HOM05D002060 ORTHO05D002098 5.9e-12 74.7 107 49.5
CSS0028622 Camellia sinensis var. sinensis HOM05D002060 ORTHO05D002098 5.9e-12 74.7 107 49.5
Lsat_1_v5_gn_8_99500 Lactuca sativa HOM05D002060 ORTHO05D002098 7.8e-12 74.3 110 47.3
Lsat_1_v5_gn_0_16980 Lactuca sativa HOM05D002060 ORTHO05D002098 1.0e-11 73.9 127 41.7
MSTRG.3349 Avicennia marina HOM05D002060 ORTHO05D002098 1.3e-11 73.6 116 43.1
Oeu010244.1 Olea europaea HOM05D002060 ORTHO05D002098 1.3e-11 73.6 129 41.9
Manes.02G053500 Manihot esculenta HOM05D002060 ORTHO05D002098 2.9e-11 72.4 108 44.4
Sabra17G0081100 Salix brachista HOM05D002060 ORTHO05D002098 2.9e-11 72.4 123 44.7
MSTRG.23892 Avicennia marina HOM05D002060 ORTHO05D002098 3.9e-11 72.0 117 42.7
Oeu062154.1 Olea europaea HOM05D002774 ORTHO05D000116 6.6e-11 71.2 146 44.5
Potri.017G092100 Populus trichocarpa HOM05D002060 ORTHO05D002098 6.6e-11 71.2 145 42.1
Lju41A4G60 Lonicera japonica HOM05D002060 ORTHO05D002098 8.6e-11 70.9 126 42.9
Prupe.3G257100 Prunus persica HOM05D002060 ORTHO05D002098 1.1e-10 70.5 125 43.2
TWI34G0351 Tripterygium wilfordii HOM05D002060 ORTHO05D002098 1.9e-10 69.7 97 47.4
Rhsim10G0044000 Rhododendron simsii HOM05D002060 ORTHO05D002098 2.5e-10 69.3 109 41.3
Hund13160 Selenicereus undatus HOM05D002060 ORTHO05D002098 2.5e-10 69.3 110 50.0
QL02p039183 Quercus lobata HOM05D002060 ORTHO05D002098 3.3e-10 68.9 107 45.8
Sed0010755 Sechium edule HOM05D002060 ORTHO05D002098 3.3e-10 68.9 111 49.5
MELO3C022026.2 Cucumis melo HOM05D002060 ORTHO05D002098 4.3e-10 68.6 113 45.1
Atru.chr8.414 Acer truncatum HOM05D002060 ORTHO05D002098 7.3e-10 67.8 112 43.8
Haze_14450 Corylus avellana HOM05D002060 ORTHO05D002098 7.3e-10 67.8 116 40.5
Gohir.A09G010500 Gossypium hirsutum HOM05D002060 ORTHO05D002098 9.5e-10 67.4 113 42.5
GSVIVG01011508001 Vitis vinifera HOM05D002060 ORTHO05D002098 9.5e-10 67.4 115 43.5
CsaV3_5G038450 Cucumis sativus L. HOM05D002060 ORTHO05D002098 1.6e-09 66.6 113 45.1
TAR629G1814 Trochodendron aralioides HOM05D002060 ORTHO05D002098 1.6e-09 66.6 113 39.8
Cfa007644 Carpinus fangiana HOM05D002060 ORTHO05D002098 2.1e-09 66.2 116 39.7
Gohir.D09G009600 Gossypium hirsutum HOM05D002060 ORTHO05D002098 2.1e-09 66.2 114 43.0
COL.COLO4_21397 Corchorus olitorius HOM05D002060 ORTHO05D002098 3.6e-09 65.5 109 45.9
Glyma.13G057600 Glycine max HOM05D002060 ORTHO05D002098 3.6e-09 65.5 112 43.8
Aa31LG11G14070 Aethionema arabicum HOM05D002060 ORTHO05D002098 4.7e-09 65.1 135 37.8
Cpa.g.sc14.165 Carica papaya HOM05D002060 ORTHO05D002098 4.7e-09 65.1 129 38.8
Gohir.A12G087200 Gossypium hirsutum HOM05D002060 ORTHO05D002098 4.7e-09 65.1 117 43.6
EL10Ac2g03120 Beta vulgaris HOM05D002060 ORTHO05D002098 6.1e-09 64.7 131 41.2
ClCG11G004680 Citrullus lanatus HOM05D002060 ORTHO05D002098 6.1e-09 64.7 113 45.1
Gohir.D12G085300 Gossypium hirsutum HOM05D002060 ORTHO05D002098 6.1e-09 64.7 136 41.2
Phvul.004G034600 Phaseolus vulgaris HOM05D002060 ORTHO05D002098 1.0e-08 63.9 106 43.4
Gorai.012G049600 Gossypium raimondii HOM05D002060 ORTHO05D002098 1.8e-08 63.2 110 42.7
Phvul.004G034700 Phaseolus vulgaris HOM05D002060 ORTHO05D002098 1.8e-08 63.2 112 41.1
VMungo0464G2089 Vigna mungo HOM05D002060 ORTHO05D002098 1.8e-08 63.2 113 43.4
VMungo0464G0669 Vigna mungo HOM05D002060 ORTHO05D002098 2.3e-08 62.8 103 43.7
SGA_v2.0_scaffold4G02401 Striga asiatica HOM05D002060 ORTHO05D002098 3.1e-08 62.4 117 41.9
MD09G1063100 Malus domestica HOM05D002060 ORTHO05D002098 4.0e-08 62.0 123 39.8
Potri.004G118700 Populus trichocarpa HOM05D002060 ORTHO05D002098 5.2e-08 61.6 124 41.1
Sed0008165 Sechium edule HOM05D002060 ORTHO05D002098 5.2e-08 61.6 126 46.8
Gohir.A05G371400 Gossypium hirsutum HOM05D002060 ORTHO05D002098 6.8e-08 61.2 110 40.0
HanXRQChr14g0450091 Helianthus annuus HOM05D002060 ORTHO05D002098 6.8e-08 61.2 107 40.2
Duzib187G0626 Durio zibethinus HOM05D002060 ORTHO05D002098 8.9e-08 60.8 120 42.5
CDE04G1025 Ceratophyllum demersum HOM05D002060 ORTHO05D002098 1.2e-07 60.5 115 40.9
CDE06G0126 Ceratophyllum demersum HOM05D002060 ORTHO05D002098 1.2e-07 60.5 110 43.6
Gorai.008G095700 Gossypium raimondii HOM05D002060 ORTHO05D002098 1.2e-07 60.5 136 39.0
FAN05G3685 Fragaria x ananassa HOM05D002060 ORTHO05D002098 2.0e-07 59.7 103 37.9
Gorai.006G011300 Gossypium raimondii HOM05D002060 ORTHO05D002098 2.0e-07 59.7 114 37.7
Lsat_1_v5_gn_6_10920 Lactuca sativa HOM05D002060 ORTHO05D002098 2.0e-07 59.7 103 43.7
TAR622G1434 Trochodendron aralioides HOM05D002060 ORTHO05D002098 2.0e-07 59.7 113 43.4
Hma1.2p1_0029F.1_g018100 Hydrangea macrophylla HOM05D002060 ORTHO05D002098 2.6e-07 59.3 121 36.4
Thecc.04G092600 Theobroma cacao HOM05D002060 ORTHO05D002098 2.6e-07 59.3 109 43.1
CiPaw.03G090300 Carya illinoinensis HOM05D002060 ORTHO05D002098 4.4e-07 58.5 104 40.4
A03p32760 Brassica napus HOM05D002060 ORTHO05D002098 5.8e-07 58.2 101 37.6
BraA03t12445Z Brassica rapa HOM05D002060 ORTHO05D002098 5.8e-07 58.2 101 37.6
CiPaw.04G057300 Carya illinoinensis HOM05D002060 ORTHO05D002098 5.8e-07 58.2 108 38.9
Psat1g066680 Pisum sativum HOM05D002060 ORTHO05D002098 5.8e-07 58.2 109 39.4
RcHm_v2.0_Chr2g0166211 Rosa chinensis HOM05D002060 ORTHO05D002098 5.8e-07 58.2 116 41.4
BcaC01g04491 Brassica carinata HOM05D002060 ORTHO05D002098 7.5e-07 57.8 108 39.8
BcaC01g04492 Brassica carinata HOM05D002060 ORTHO05D002098 7.5e-07 57.8 108 39.8
Ciclev10011468m.g Citrus clementina HOM05D002060 ORTHO05D002098 7.5e-07 57.8 116 38.8
Eucgr.I01972 Eucalyptus grandis HOM05D002060 ORTHO05D002098 7.5e-07 57.8 117 38.5
Nn3g17407 Nelumbo nucifera HOM05D002060 ORTHO05D002098 7.5e-07 57.8 126 38.1
SalBow1G3233 Salvia bowleyana HOM05D002060 ORTHO05D002098 7.5e-07 57.8 91 41.8
Sp6g28590 Schrenkiella parvula HOM05D002060 ORTHO05D002098 1.3e-06 57.0 116 36.2
Ca_04325_v3 Cicer arietinum L. HOM05D002060 ORTHO05D002098 1.7e-06 56.6 128 36.7
MSTRG.3012 Avicennia marina HOM05D002060 ORTHO05D002098 2.2e-06 56.2 119 39.5
Thhalv10020582m.g Eutrema salsugineum HOM05D002060 ORTHO05D002098 3.7e-06 55.5 113 38.9
AL3G11270 Arabidopsis lyrata HOM05D002060 ORTHO05D002098 4.9e-06 55.1 119 37.8
AT5G15510 Arabidopsis thaliana HOM05D002060 ORTHO05D002098 4.9e-06 55.1 114 39.5
Migut.K01279 Erythranthe guttata HOM05D002060 ORTHO05D002098 4.9e-06 55.1 123 37.4
FAN02G2985 Fragaria x ananassa HOM05D002060 ORTHO05D002098 4.9e-06 55.1 115 36.5
AT3G01015 Arabidopsis thaliana HOM05D002060 ORTHO05D002098 6.4e-06 54.7 108 42.6
FvH4_6g47160 Fragaria vesca HOM05D002060 ORTHO05D002098 6.4e-06 54.7 114 37.7
FAN14G1077 Fragaria x ananassa HOM05D002060 ORTHO05D002098 6.4e-06 54.7 114 37.7
Aqoxy3G03590 Aquilegia oxysepala HOM05D002060 ORTHO05D002098 8.3e-06 54.3 128 34.4
MD17G1057000 Malus domestica HOM05D002060 ORTHO05D002098 8.3e-06 54.3 123 38.2


User provided reference genes

Program Settings