Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 9.7e-128 460.3 256 100.0
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 3.1e-126 455.3 256 99.2
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 6.2e-58 228.4 268 55.6
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 5.2e-57 225.3 267 55.1
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 1.3e-55 220.7 271 54.2
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 6.4e-55 218.4 271 53.9
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 4.0e-49 199.1 271 51.7
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 2.3e-44 183.3 315 42.9
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.0e-40 170.2 278 42.4
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.6e-40 169.9 278 42.4
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 2.6e-40 169.9 305 41.6
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 9.9e-40 167.9 301 41.2
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 1.1e-38 164.5 332 38.0
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 1.4e-38 164.1 265 41.5
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 1.4e-38 164.1 302 42.4
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 2.4e-38 163.3 303 42.2
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 4.2e-38 162.5 307 40.1
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 9.3e-38 161.4 353 36.3
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 1.2e-37 161.0 261 41.4
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 1.2e-37 161.0 267 40.1
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 4.6e-37 159.1 192 52.1
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 4.6e-37 159.1 315 39.0
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 7.9e-37 158.3 299 40.1
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 3.0e-36 156.4 309 36.6
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.9e-36 156.0 361 36.6
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 5.1e-36 155.6 284 37.7
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 1.1e-35 154.5 308 38.6
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.1e-35 154.5 282 38.7
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.5e-35 154.1 236 44.5
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 1.9e-35 153.7 317 37.5
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 3.3e-35 152.9 328 36.3
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 4.3e-35 152.5 324 38.9
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 4.3e-35 152.5 281 37.4
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 5.6e-35 152.1 241 39.4
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 7.4e-35 151.8 277 38.6
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 9.6e-35 151.4 273 38.8
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 9.6e-35 151.4 191 50.8
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 9.6e-35 151.4 334 35.3
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 1.3e-34 151.0 281 37.0
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.1e-34 150.2 264 40.2
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 2.1e-34 150.2 177 52.0
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 2.8e-34 149.8 313 38.7
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 3.7e-34 149.4 321 36.1
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 3.7e-34 149.4 309 35.9
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 6.2e-34 148.7 247 43.7
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 6.2e-34 148.7 260 41.2
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 8.1e-34 148.3 306 35.6
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 1.1e-33 147.9 256 41.4
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 1.8e-33 147.1 346 34.7
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 1.8e-33 147.1 329 33.7
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 1.8e-33 147.1 331 36.9
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.4e-33 146.7 306 35.9
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.4e-33 146.7 356 32.0
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.4e-33 146.7 329 34.0
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 2.4e-33 146.7 185 48.6
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 2.4e-33 146.7 334 35.6
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 4.0e-33 146.0 273 38.1
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 4.0e-33 146.0 301 36.2
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 6.9e-33 145.2 312 37.5
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 6.9e-33 145.2 311 34.1
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 1.2e-32 144.4 101 69.3
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 1.5e-32 144.1 279 40.5
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 2.0e-32 143.7 297 36.4
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.6e-32 143.3 317 34.7
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 2.6e-32 143.3 322 36.3
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 7.6e-32 141.7 290 38.3
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 7.6e-32 141.7 290 36.2
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 7.6e-32 141.7 308 35.7
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 7.6e-32 141.7 341 34.6
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 9.9e-32 141.4 306 39.2
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 9.9e-32 141.4 262 37.8
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 1.3e-31 141.0 345 33.9
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 1.3e-31 141.0 347 32.9
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.7e-31 140.6 306 35.9
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 2.2e-31 140.2 360 33.1
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 2.9e-31 139.8 300 36.0
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 2.9e-31 139.8 345 34.5
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 6.4e-31 138.7 294 35.4
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.1e-30 137.9 345 34.2
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 4.2e-30 136.0 303 36.6
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 7.1e-30 135.2 351 33.0
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 9.3e-30 134.8 101 63.4
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 1.2e-29 134.4 329 33.4
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 2.1e-29 133.7 251 37.5
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 6.0e-29 132.1 312 35.3
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 6.0e-29 132.1 344 32.0
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 7.9e-29 131.7 316 37.7
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.3e-28 131.0 324 32.1
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 1.9e-27 127.1 101 62.4
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 5.6e-27 125.6 381 31.8
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 5.6e-27 125.6 101 65.3
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 1.3e-26 124.4 247 36.8
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 1.6e-26 124.0 103 62.1
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 2.8e-26 123.2 379 31.4
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.7e-26 122.9 101 61.4
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 4.8e-26 122.5 289 32.9
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 4.8e-26 122.5 325 32.0
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 8.2e-26 121.7 254 36.6
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 8.2e-26 121.7 274 33.9
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.4e-25 120.9 259 35.5
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 1.4e-25 120.9 87 70.1
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 1.4e-25 120.9 102 60.8
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 2.4e-25 120.2 261 35.6
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 4.0e-25 119.4 261 35.6
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 4.0e-25 119.4 261 35.6
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 5.3e-25 119.0 235 37.0
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 6.9e-25 118.6 266 34.2
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 9.0e-25 118.2 272 36.0
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.2e-24 117.9 101 60.4
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 3.4e-24 116.3 154 46.8
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 3.4e-24 116.3 298 34.6
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 4.5e-24 115.9 252 35.7
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 4.5e-24 115.9 262 35.9
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 7.6e-24 115.2 100 61.0
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 7.6e-24 115.2 100 60.0
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 7.6e-24 115.2 100 61.0
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 7.6e-24 115.2 100 60.0
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 7.6e-24 115.2 253 36.0
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 1.0e-23 114.8 100 61.0
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.2e-23 113.6 260 33.5
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 2.9e-23 113.2 156 46.2
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 2.9e-23 113.2 156 46.2
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 3.8e-23 112.8 271 36.5
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 8.4e-23 111.7 130 49.2
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.1e-22 111.3 298 34.2
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.9e-22 110.5 276 35.1
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 2.5e-22 110.2 104 54.8
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.5e-22 110.2 290 30.7
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 4.2e-22 109.4 264 32.2
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 4.2e-22 109.4 152 46.7
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 4.2e-22 109.4 152 46.7
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 4.2e-22 109.4 152 46.7
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 4.2e-22 109.4 259 27.8
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 5.5e-22 109.0 101 56.4
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 9.3e-22 108.2 176 41.5
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 4.6e-21 105.9 100 56.0
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 4.6e-21 105.9 100 56.0
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 7.9e-21 105.1 244 35.2
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 2.3e-20 103.6 103 53.4
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 3.0e-20 103.2 252 28.6
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.9e-20 102.8 70 75.7
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 3.9e-20 102.8 240 36.2
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 3.9e-20 102.8 240 36.2
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 6.7e-20 102.1 102 51.0
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 1.1e-19 101.3 295 34.2
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.1e-19 101.3 102 51.0
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 2.5e-19 100.1 103 48.5
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 2.5e-19 100.1 417 27.1
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 3.3e-19 99.8 183 36.6
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 4.3e-19 99.4 70 72.9
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 1.6e-18 97.4 150 42.0
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 2.8e-18 96.7 288 32.6
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 3.7e-18 96.3 150 44.7
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 3.1e-17 93.2 87 43.7
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 4.1e-17 92.8 220 33.6
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 6.9e-17 92.0 232 30.6
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 1.5e-16 90.9 256 30.9
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 7.7e-16 88.6 178 34.3
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 8.5e-15 85.1 106 44.3
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 3.6e-13 79.7 221 31.7
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 3.6e-13 79.7 164 35.4
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 4.6e-13 79.3 106 43.4
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 4.6e-13 79.3 173 35.8
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 5.1e-12 75.9 218 28.4
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 3.3e-11 73.2 267 30.0
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 2.2e-10 70.5 249 26.1
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 9.1e-09 65.1 39 76.9
Os01g0884700 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 3.4e-08 63.2 213 23.9
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 7.2e-06 55.5 214 28.5


User provided reference genes

Program Settings