Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 7.1e-37 156.8 79 100.0
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 3.4e-31 137.9 79 86.1
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 7.6e-31 136.7 79 84.8
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 7.6e-31 136.7 80 86.2
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.3e-30 136.0 80 87.5
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 3.8e-30 134.4 79 82.3
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 1.1e-29 132.9 80 85.0
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.1e-29 132.9 79 81.0
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 1.9e-29 132.1 79 81.0
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 2.4e-29 131.7 79 79.7
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 3.2e-29 131.3 79 79.7
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 7.1e-29 130.2 79 78.5
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 9.2e-29 129.8 79 78.5
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 9.2e-29 129.8 79 78.5
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 1.2e-28 129.4 76 85.5
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.2e-28 129.4 79 77.2
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 2.1e-28 128.6 79 75.9
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 2.7e-28 128.3 79 74.7
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.7e-28 128.3 79 77.2
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 2.7e-28 128.3 79 75.9
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 2.7e-28 128.3 79 75.9
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 4.6e-28 127.5 79 75.9
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 4.6e-28 127.5 79 77.2
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 6.0e-28 127.1 79 77.2
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 6.0e-28 127.1 77 77.9
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 7.8e-28 126.7 79 73.4
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 1.3e-27 125.9 79 73.4
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 2.3e-27 125.2 79 79.7
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 3.9e-27 124.4 78 74.4
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 3.9e-27 124.4 79 75.9
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 6.6e-27 123.6 79 74.7
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 8.7e-27 123.2 76 78.9
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.1e-26 122.9 78 74.4
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 1.5e-26 122.5 79 72.2
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 1.5e-26 122.5 79 74.7
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.5e-26 122.5 78 75.6
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 1.5e-26 122.5 75 73.3
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 1.9e-26 122.1 79 73.4
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 2.5e-26 121.7 79 73.4
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 2.5e-26 121.7 101 63.4
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 3.3e-26 121.3 79 72.2
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 4.3e-26 120.9 79 73.4
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 4.3e-26 120.9 79 73.4
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 5.6e-26 120.6 77 74.0
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 5.6e-26 120.6 79 73.4
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 5.6e-26 120.6 79 73.4
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 7.3e-26 120.2 79 73.4
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 7.3e-26 120.2 79 72.2
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 7.3e-26 120.2 79 69.6
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 9.6e-26 119.8 79 72.2
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 9.6e-26 119.8 76 76.3
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 9.6e-26 119.8 79 72.2
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 9.6e-26 119.8 79 72.2
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 9.6e-26 119.8 75 73.3
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 1.2e-25 119.4 79 70.9
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 1.6e-25 119.0 76 76.3
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 1.6e-25 119.0 79 73.4
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 2.1e-25 118.6 77 74.0
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 2.1e-25 118.6 79 69.6
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 2.1e-25 118.6 79 69.6
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 2.8e-25 118.2 79 72.2
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 2.8e-25 118.2 79 67.1
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 2.8e-25 118.2 79 70.9
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 3.6e-25 117.9 79 69.6
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 4.7e-25 117.5 79 69.6
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 6.2e-25 117.1 79 69.6
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 6.2e-25 117.1 79 65.8
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 6.2e-25 117.1 79 65.8
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 6.2e-25 117.1 76 73.7
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 8.1e-25 116.7 76 72.4
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 8.1e-25 116.7 79 70.9
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.1e-24 116.3 79 70.9
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 1.8e-24 115.5 76 72.4
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 2.4e-24 115.2 76 75.0
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 2.4e-24 115.2 79 65.8
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 2.4e-24 115.2 79 70.9
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 3.1e-24 114.8 79 69.6
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 6.9e-24 113.6 79 63.3
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 9.0e-24 113.2 75 66.7
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 9.0e-24 113.2 74 71.6
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 9.0e-24 113.2 74 71.6
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 1.2e-23 112.8 77 68.8
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 3.4e-23 111.3 79 65.8
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 3.4e-23 111.3 77 67.5
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 3.4e-23 111.3 77 67.5
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 4.4e-23 110.9 75 70.7
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 4.4e-23 110.9 75 70.7
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 5.8e-23 110.5 76 71.1
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 2.2e-22 108.6 63 79.4
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 2.9e-22 108.2 86 60.5
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 3.8e-22 107.8 62 79.0
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 3.8e-22 107.8 73 74.0
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 4.9e-22 107.5 76 65.8
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 4.9e-22 107.5 79 64.6
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 6.4e-22 107.1 76 65.8
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.1e-21 106.3 62 77.4
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 1.9e-21 105.5 79 60.8
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 2.4e-21 105.1 79 60.8
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 2.4e-21 105.1 72 70.8
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 3.2e-21 104.8 59 83.1
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 3.2e-21 104.8 77 63.6
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 4.2e-21 104.4 68 69.1
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 4.2e-21 104.4 73 65.8
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 7.1e-21 103.6 76 64.5
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 7.1e-21 103.6 76 64.5
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 7.1e-21 103.6 75 68.0
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 7.1e-21 103.6 75 68.0
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 7.1e-21 103.6 75 68.0
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 7.1e-21 103.6 75 68.0
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 9.3e-21 103.2 76 64.5
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 9.3e-21 103.2 76 64.5
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 9.3e-21 103.2 76 64.5
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 9.3e-21 103.2 76 64.5
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 9.3e-21 103.2 79 64.6
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 9.3e-21 103.2 65 73.8
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 1.6e-20 102.4 76 63.2
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 2.1e-20 102.1 57 80.7
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 2.7e-20 101.7 65 72.3
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.7e-20 101.7 79 59.5
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 3.5e-20 101.3 65 72.3
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 6.0e-20 100.5 79 59.5
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 6.0e-20 100.5 77 59.7
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 7.8e-20 100.1 73 65.8
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.7e-19 99.0 68 63.2
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 1.7e-19 99.0 53 81.1
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 8.7e-19 96.7 54 79.6
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 1.5e-18 95.9 57 77.2
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 2.5e-18 95.1 70 55.7
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 9.6e-18 93.2 62 69.4
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 1.3e-17 92.8 62 69.4
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 1.3e-17 92.8 55 74.5
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.3e-17 92.8 76 55.3
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 1.6e-17 92.4 61 65.6
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 3.6e-17 91.3 76 53.9
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 3.6e-17 91.3 64 62.5
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 8.1e-17 90.1 59 66.1
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.4e-16 89.4 69 59.4
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 4.0e-16 87.8 74 56.8
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 2.6e-15 85.1 67 52.2
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 3.9e-11 71.2 67 49.3
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 7.4e-10 67.0 48 64.6
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 1.6e-09 65.9 64 48.4
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.4e-08 62.8 64 46.9
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 2.4e-08 62.0 73 45.2
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 2.4e-08 62.0 79 36.7


User provided reference genes

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