Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 3.3e-95 351.7 173 100.0
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 4.7e-86 321.2 173 93.1
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 5.2e-85 317.8 173 92.5
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 6.8e-85 317.4 171 92.4
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.3e-80 302.4 175 87.4
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 8.7e-80 300.4 173 87.3
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 9.6e-79 297.0 174 86.8
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 4.2e-66 255.0 163 74.8
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 2.5e-63 245.7 163 73.6
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 5.6e-63 244.6 163 72.4
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.6e-62 243.0 163 74.2
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 2.1e-62 242.7 163 74.2
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 2.8e-62 242.3 170 68.2
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 5.3e-61 238.0 163 69.9
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 6.9e-61 237.7 163 70.6
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 6.9e-61 237.7 163 70.6
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 9.0e-61 237.3 163 69.3
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 2.6e-60 235.7 163 70.6
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 4.5e-60 235.0 162 72.2
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.2e-59 232.6 164 68.9
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 2.2e-59 232.6 163 66.9
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 3.2e-58 228.8 167 68.3
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 4.2e-58 228.4 163 68.7
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 5.5e-58 228.0 163 68.1
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 7.1e-58 227.6 162 67.9
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 7.1e-58 227.6 164 68.3
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 9.3e-58 227.3 163 68.7
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 1.2e-57 226.9 170 64.1
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 2.1e-57 226.1 166 68.1
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 2.7e-57 225.7 163 66.3
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 2.7e-57 225.7 163 65.6
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 2.7e-57 225.7 170 65.3
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 4.6e-57 224.9 164 67.7
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 6.0e-57 224.6 165 66.1
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 6.0e-57 224.6 164 67.1
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 6.0e-57 224.6 163 67.5
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.3e-56 223.4 163 66.9
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 1.3e-56 223.4 163 67.5
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 1.8e-56 223.0 171 65.5
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 3.0e-56 222.2 164 67.1
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 3.0e-56 222.2 163 67.5
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 5.1e-56 221.5 166 67.5
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 5.1e-56 221.5 162 69.8
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 1.1e-55 220.3 163 68.1
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 2.5e-55 219.2 163 65.6
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 3.3e-55 218.8 162 68.5
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 5.7e-55 218.0 162 67.9
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 9.6e-55 217.2 165 64.2
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 3.7e-54 215.3 156 69.2
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 1.1e-53 213.8 167 66.5
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 1.4e-53 213.4 166 65.7
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 5.3e-53 211.5 162 61.1
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 5.3e-53 211.5 162 63.6
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.5e-52 209.9 162 63.0
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 2.6e-52 209.1 162 66.0
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 2.6e-52 209.1 162 65.4
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 5.8e-52 208.0 162 63.0
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 7.6e-52 207.6 162 64.8
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 1.0e-51 207.2 167 61.1
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 2.9e-51 205.7 163 65.0
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 3.8e-51 205.3 162 61.7
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 5.0e-51 204.9 163 63.8
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 5.0e-51 204.9 166 63.9
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 6.5e-51 204.5 166 63.3
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 8.4e-51 204.1 164 61.6
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 1.9e-50 203.0 163 66.3
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.9e-50 203.0 163 66.3
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 1.9e-50 203.0 167 63.5
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.5e-50 202.6 166 63.3
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 3.2e-50 202.2 163 65.0
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 4.2e-50 201.8 162 61.1
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 4.2e-50 201.8 162 61.7
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 7.1e-50 201.1 163 61.3
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 7.1e-50 201.1 163 65.0
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.2e-49 200.3 163 65.0
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 1.2e-49 200.3 162 63.0
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 1.6e-49 199.9 158 64.6
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 2.7e-49 199.1 163 63.2
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.7e-49 199.1 165 62.4
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 3.5e-49 198.7 162 63.0
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 4.6e-49 198.4 165 61.8
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.3e-48 196.8 165 61.2
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 1.8e-48 196.4 163 64.4
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 8.7e-48 194.1 165 62.4
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 1.1e-47 193.7 161 59.6
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.9e-47 193.0 165 60.0
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 1.9e-47 193.0 166 60.2
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 1.9e-47 193.0 166 60.2
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 2.5e-47 192.6 166 60.2
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 3.3e-47 192.2 169 58.6
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 4.3e-47 191.8 165 58.8
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 4.3e-47 191.8 158 61.4
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 5.7e-47 191.4 163 63.8
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 7.4e-47 191.0 163 63.2
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 9.7e-47 190.7 166 59.6
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 1.3e-46 190.3 166 59.6
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 1.3e-46 190.3 166 59.6
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 2.2e-46 189.5 166 59.0
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 8.2e-46 187.6 157 60.5
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 8.2e-46 187.6 142 65.5
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.4e-45 186.8 167 56.9
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 9.0e-45 184.1 165 59.4
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 9.0e-45 184.1 153 58.8
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 1.2e-44 183.7 168 57.7
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.2e-44 183.7 162 59.3
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 1.9e-42 176.4 134 63.4
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 4.6e-41 171.8 144 57.6
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 1.0e-40 170.6 166 56.0
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 1.0e-40 170.6 166 56.0
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 1.8e-40 169.9 130 68.5
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.8e-40 169.9 163 57.1
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 3.0e-40 169.1 161 57.1
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 2.0e-39 166.4 166 53.0
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 2.0e-39 166.4 166 55.4
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.8e-38 162.5 173 57.2
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 8.2e-38 161.0 162 54.3
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 8.2e-38 161.0 126 61.9
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.0e-36 156.4 165 52.7
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.3e-35 153.7 165 52.1
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.3e-35 153.7 135 60.0
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 3.8e-35 152.1 165 51.5
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 3.2e-34 149.1 161 51.6
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 4.2e-34 148.7 164 45.7
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 2.1e-33 146.4 124 56.5
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.0e-32 144.1 141 49.6
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 3.9e-32 142.1 162 48.8
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 3.9e-32 142.1 165 47.9
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 5.1e-32 141.7 170 49.4
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 6.7e-32 141.4 159 47.8
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 4.4e-31 138.7 112 58.0
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 1.7e-30 136.7 131 54.2
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 4.8e-30 135.2 154 50.0
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 1.4e-29 133.7 101 62.4
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 2.0e-28 129.8 127 54.3
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 3.5e-28 129.0 70 94.3
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 3.5e-28 129.0 167 47.3
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 7.7e-28 127.9 69 94.2
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.3e-27 127.1 159 47.2
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 2.9e-27 125.9 127 47.2
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 6.5e-27 124.8 117 51.3
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 1.1e-26 124.0 138 44.9
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 1.0e-24 117.5 121 47.1
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 5.2e-24 115.2 89 64.0
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 5.7e-23 111.7 148 43.2
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 7.0e-21 104.8 73 64.4
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 2.6e-20 102.8 77 63.6
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 2.3e-16 89.7 63 63.5
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 2.6e-15 86.3 63 60.3
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 4.8e-14 82.0 94 43.6
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 8.3e-14 81.3 64 67.2
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.4e-13 79.7 81 53.1
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.2e-12 77.4 78 53.8
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 1.2e-12 77.4 80 53.8
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.6e-12 77.0 61 68.9
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 5.9e-12 75.1 60 66.7
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.3e-11 73.9 56 69.6
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.3e-11 73.9 56 69.6
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.8e-11 72.4 53 69.8
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 5.0e-11 72.0 61 59.0
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 1.1e-10 70.9 118 34.7
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 3.6e-09 65.9 113 38.1
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 1.4e-08 63.9 61 45.9
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 8.8e-08 61.2 106 29.2
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 2.0e-07 60.1 57 42.1
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 2.0e-07 60.1 60 53.3


User provided reference genes

Program Settings