Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 1.1e-311 1072.4 522 100.0
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 2.1e-302 1041.6 522 96.6
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 1.3e-293 1012.3 522 92.1
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 1.5e-292 1008.8 522 92.1
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 5.5e-255 884.0 527 83.5
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 2.0e-249 865.5 519 77.1
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 1.5e-247 859.4 515 77.5
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 1.2e-246 856.3 515 77.1
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 8.9e-245 850.1 518 79.9
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 3.5e-241 838.2 513 76.2
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 2.3e-240 835.5 513 75.8
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 3.8e-240 834.7 514 75.7
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 3.6e-238 828.2 514 75.7
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 1.8e-237 825.9 519 74.8
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 4.9e-235 817.8 513 74.1
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 6.0e-233 810.8 515 73.2
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 5.0e-232 807.7 517 72.5
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 1.5e-231 806.2 519 72.4
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 2.5e-231 805.4 513 73.1
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 4.3e-231 804.7 515 73.4
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 4.3e-231 804.7 513 72.3
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 8.0e-230 800.4 513 73.7
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 1.2e-228 796.6 529 71.8
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 1.2e-228 796.6 514 70.8
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 1.5e-228 796.2 515 71.8
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 7.5e-228 793.9 513 71.5
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 1.7e-227 792.7 513 71.9
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.7e-227 792.7 513 71.5
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 3.7e-227 791.6 514 71.0
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 6.4e-227 790.8 513 71.3
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 4.1e-226 788.1 514 70.8
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 5.4e-226 787.7 513 70.0
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 9.2e-226 786.9 515 70.9
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 1.2e-225 786.6 519 70.7
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 1.2e-225 786.6 514 70.8
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 2.0e-225 785.8 515 69.9
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 7.8e-225 783.9 514 69.8
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 1.0e-224 783.5 514 72.4
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 2.3e-224 782.3 497 72.6
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 5.0e-224 781.2 513 70.2
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 6.6e-224 780.8 517 70.6
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.1e-223 780.0 535 68.6
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 1.9e-223 779.2 514 69.6
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 1.9e-223 779.2 512 69.7
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.2e-222 776.5 514 69.8
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.2e-222 776.5 517 69.6
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 2.8e-222 775.4 514 70.2
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 2.8e-222 775.4 518 69.9
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 3.6e-222 775.0 512 69.3
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 4.7e-222 774.6 515 70.7
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 6.2e-222 774.2 518 67.0
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 1.4e-221 773.1 490 73.1
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 1.8e-221 772.7 489 74.2
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 5.2e-221 771.2 514 69.6
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 6.8e-221 770.8 514 68.9
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 1.2e-220 770.0 505 70.3
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 9.9e-220 766.9 513 69.6
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 9.9e-220 766.9 510 69.8
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 4.9e-219 764.6 518 67.8
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 8.3e-219 763.8 512 67.8
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 3.2e-218 761.9 515 69.1
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 3.5e-217 758.4 512 66.2
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 1.0e-216 756.9 518 66.6
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 3.3e-215 751.9 513 67.4
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 3.3e-215 751.9 514 68.3
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 4.3e-215 751.5 513 67.4
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 5.6e-215 751.1 519 66.3
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 5.6e-215 751.1 513 67.1
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 2.1e-214 749.2 513 67.8
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 2.1e-214 749.2 513 67.8
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 3.6e-214 748.4 560 65.4
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 6.2e-214 747.7 572 63.3
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 1.8e-213 746.1 525 71.2
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 2.9e-211 738.8 544 63.8
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 3.8e-211 738.4 537 64.4
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 1.4e-210 736.5 474 70.7
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 7.8e-209 730.7 510 68.8
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 1.0e-208 730.3 513 68.0
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 1.4e-202 709.9 516 65.3
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 7.1e-202 707.6 523 65.8
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 4.6e-201 704.9 514 63.2
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 5.1e-200 701.4 514 62.3
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 1.9e-199 699.5 685 53.0
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 2.5e-199 699.1 518 61.6
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 2.5e-199 699.1 545 63.9
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 3.4e-196 688.7 435 74.7
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 2.3e-192 676.0 520 60.6
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 1.3e-190 670.2 434 71.0
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 2.8e-190 669.1 397 76.8
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 6.2e-190 667.9 500 66.0
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 1.8e-189 666.4 582 58.1
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 1.9e-186 656.4 496 65.7
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 5.1e-184 648.3 576 56.9
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 4.3e-183 645.2 516 61.6
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 2.6e-180 636.0 391 73.1
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 2.9e-171 605.9 420 65.2
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 1.1e-165 587.4 487 60.0
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.2e-162 575.5 363 73.3
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 3.0e-160 569.3 513 53.2
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 3.7e-158 562.4 338 76.0
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 4.8e-158 562.0 531 50.8
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 7.4e-151 538.1 507 53.6
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 3.7e-150 535.8 306 80.1
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 3.6e-145 519.2 514 53.1
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 1.8e-144 516.9 354 68.9
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.5e-140 502.7 513 52.2
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 4.2e-138 495.7 286 78.7
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 1.8e-133 480.3 549 45.0
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 4.5e-132 475.7 236 95.8
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 2.5e-130 469.9 444 50.7
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 4.7e-129 465.7 349 65.9
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 9.8e-127 458.0 342 64.6
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.7e-126 457.2 252 81.7
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 6.8e-112 408.7 228 79.8
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 6.8e-112 408.7 228 79.8
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 9.8e-111 404.8 286 65.4
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 2.1e-108 397.1 228 76.8
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 1.2e-84 318.2 526 38.6
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 1.5e-79 301.2 169 87.0
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 2.6e-79 300.4 166 80.1
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 2.8e-73 280.4 529 34.6
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 6.9e-72 275.8 204 66.7
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.5e-71 274.6 201 67.7
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 5.8e-71 272.7 561 31.6
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 1.3e-70 271.6 538 34.8
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 4.3e-66 256.5 353 43.6
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 4.8e-65 253.1 490 34.3
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 6.2e-65 252.7 240 55.0
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 3.0e-59 233.8 195 57.4
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 2.8e-49 200.7 262 42.0
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 7.0e-40 169.5 332 34.0
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 9.1e-40 169.1 157 58.0
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 1.0e-35 155.6 85 75.3
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 5.3e-32 143.3 196 43.4
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 3.8e-30 137.1 109 63.3
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 3.8e-30 137.1 80 78.8
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 1.1e-29 135.6 105 63.8
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 6.1e-28 129.8 99 61.6
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 1.2e-26 125.6 119 50.4
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 7.0e-24 116.3 85 63.5
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.6e-23 115.2 103 61.2
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 5.5e-21 106.7 269 31.2
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 1.1e-13 82.4 41 78.0
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 4.7e-12 77.0 98 48.0
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 4.9e-09 67.0 80 43.8
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 3.5e-07 60.8 51 54.9


User provided reference genes

Program Settings