Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 3.7e-70 268.1 136 100.0
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 1.4e-64 249.6 136 93.4
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 1.4e-64 249.6 136 93.4
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 5.2e-64 247.7 136 93.4
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 4.4e-63 244.6 136 91.9
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 7.6e-63 243.8 136 91.9
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 7.3e-58 227.3 138 86.2
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 3.2e-53 211.8 136 77.9
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 4.2e-53 211.5 136 77.2
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 7.1e-53 210.7 136 76.5
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 7.1e-53 210.7 136 75.7
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.6e-52 209.5 137 76.6
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 1.6e-52 209.5 136 77.9
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 7.8e-52 207.2 136 74.3
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 1.3e-51 206.5 138 76.1
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 1.3e-51 206.5 133 75.9
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 1.3e-51 206.5 137 77.4
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 3.9e-51 204.9 136 74.3
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 6.6e-51 204.1 136 75.7
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 6.6e-51 204.1 137 75.9
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 8.7e-51 203.8 137 75.9
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 8.7e-51 203.8 136 74.3
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 1.5e-50 203.0 138 75.4
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.5e-50 203.0 137 75.9
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 2.5e-50 202.2 139 74.1
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.5e-50 202.2 136 74.3
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 5.6e-50 201.1 138 74.6
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 5.6e-50 201.1 137 76.6
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 7.3e-50 200.7 137 75.9
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 7.3e-50 200.7 137 75.9
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 7.3e-50 200.7 134 71.6
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 9.6e-50 200.3 139 75.5
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 1.6e-49 199.5 138 73.9
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 2.1e-49 199.1 136 72.8
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 2.1e-49 199.1 137 75.2
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.8e-49 198.7 138 74.6
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 3.6e-49 198.4 137 72.3
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 3.6e-49 198.4 136 73.5
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 4.8e-49 198.0 138 71.0
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 6.2e-49 197.6 136 72.8
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 6.2e-49 197.6 136 73.5
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 8.1e-49 197.2 138 74.6
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 1.1e-48 196.8 137 74.5
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 1.4e-48 196.4 136 72.1
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.8e-48 196.1 138 74.6
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 1.8e-48 196.1 136 72.8
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 1.8e-48 196.1 138 73.2
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 1.8e-48 196.1 137 73.0
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 4.0e-48 194.9 137 70.8
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 4.0e-48 194.9 137 73.7
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 4.0e-48 194.9 138 73.2
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 5.3e-48 194.5 139 70.5
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 5.3e-48 194.5 137 70.8
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 6.9e-48 194.1 138 73.9
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 6.9e-48 194.1 137 73.0
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 9.0e-48 193.7 138 69.6
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 1.5e-47 193.0 138 70.3
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 2.0e-47 192.6 136 72.1
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 2.6e-47 192.2 140 71.4
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 2.6e-47 192.2 136 69.9
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 9.9e-47 190.3 140 71.4
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 1.3e-46 189.9 136 69.1
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 1.3e-46 189.9 136 69.9
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 4.9e-46 188.0 141 70.2
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 4.9e-46 188.0 136 68.4
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 6.4e-46 187.6 138 71.7
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 1.9e-45 186.0 137 67.2
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 2.4e-45 185.7 138 71.0
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 3.2e-45 185.3 139 69.8
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 5.4e-45 184.5 137 68.6
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 5.4e-45 184.5 136 65.4
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 1.6e-44 183.0 137 67.9
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 1.6e-44 183.0 140 67.9
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 4.6e-44 181.4 139 66.2
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 4.6e-44 181.4 139 68.3
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 4.6e-44 181.4 136 68.4
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 6.0e-44 181.0 140 67.1
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 1.0e-43 180.3 143 69.9
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 1.0e-43 180.3 139 66.9
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 1.8e-43 179.5 139 68.3
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 2.3e-43 179.1 118 77.1
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 3.0e-43 178.7 140 67.9
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 3.0e-43 178.7 138 66.7
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 6.7e-43 177.6 138 65.9
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 6.7e-43 177.6 140 67.1
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 6.7e-43 177.6 136 68.4
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 1.1e-42 176.8 137 66.4
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 1.1e-42 176.8 137 66.4
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 1.1e-42 176.8 137 66.4
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 1.1e-42 176.8 137 66.4
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 1.9e-42 176.0 138 65.2
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 1.9e-42 176.0 140 67.9
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 7.4e-42 174.1 136 67.6
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 7.4e-42 174.1 140 67.1
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 9.6e-42 173.7 137 64.2
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 1.3e-41 173.3 138 65.2
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 1.6e-41 172.9 137 64.2
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 1.6e-41 172.9 138 65.2
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 2.8e-41 172.2 138 65.2
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 3.7e-41 171.8 139 65.5
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 4.8e-41 171.4 168 56.5
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 8.1e-41 170.6 120 72.5
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 1.8e-40 169.5 130 66.2
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 6.9e-40 167.5 106 73.6
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 4.5e-39 164.9 143 60.1
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 5.8e-39 164.5 124 67.7
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 1.3e-38 163.3 136 65.4
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 2.2e-38 162.5 107 72.0
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 2.9e-38 162.2 104 75.0
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 4.9e-38 161.4 143 60.1
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 1.1e-37 160.2 126 66.7
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 1.4e-37 159.8 155 58.7
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 1.9e-37 159.5 132 63.6
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 9.3e-37 157.1 137 60.6
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 9.3e-37 157.1 120 66.7
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 2.7e-36 155.6 209 47.4
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 7.9e-36 154.1 120 65.8
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 1.0e-35 153.7 138 59.4
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 5.1e-35 151.4 90 82.2
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 1.9e-34 149.4 144 59.0
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 6.9e-32 141.0 102 69.6
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 1.0e-30 137.1 89 74.2
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 1.7e-30 136.3 88 77.3
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 2.2e-30 136.0 120 55.8
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 4.9e-30 134.8 89 70.8
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 2.5e-29 132.5 108 67.6
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 5.1e-27 124.8 70 82.9
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 1.1e-26 123.6 144 49.3
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 1.5e-26 123.2 116 55.2
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 5.7e-26 121.3 120 56.7
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 1.3e-25 120.2 89 60.7
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 2.8e-25 119.0 87 70.1
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 2.2e-22 109.4 89 55.1
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 1.4e-21 106.7 108 55.6
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.5e-21 105.9 74 70.3
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 3.0e-19 99.0 87 63.2
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 1.1e-16 90.5 65 67.7
QL04p026254 Quercus lobata HOM05D005488 ORTHO05D006568 5.3e-16 88.2 69 65.2
Rhsim03G0098500 Rhododendron simsii HOM05D005488 ORTHO05D006568 3.3e-10 68.9 40 85.0
Ah.09g229170 Amaranthus hybridus HOM05D002686 ORTHO05D003222 5.3e-08 61.6 157 31.8
MD00G1150500 Malus domestica HOM05D005488 ORTHO05D006568 7.0e-08 61.2 37 75.7
AUR62028287 Chenopodium quinoa HOM05D002686 ORTHO05D003222 4.5e-07 58.5 157 30.6
THA.LOC104810987 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 4.5e-07 58.5 161 31.1
Aa31LG1G13960 Aethionema arabicum HOM05D002686 ORTHO05D003222 5.9e-07 58.2 159 30.8
BolC3t13645H Brassica oleracea HOM05D002686 ORTHO05D003222 7.7e-07 57.8 160 30.6
THA.LOC104799611 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 7.7e-07 57.8 135 32.6
Thhalv10014202m.g Eutrema salsugineum HOM05D002686 ORTHO05D003222 1.0e-06 57.4 135 30.4
Sp6g23760 Schrenkiella parvula HOM05D002686 ORTHO05D003222 1.0e-06 57.4 135 30.4
BcaB05g22817 Brassica carinata HOM05D002686 ORTHO05D003222 1.3e-06 57.0 135 30.4
COL.COLO4_21229 Corchorus olitorius HOM05D002686 ORTHO05D003222 1.3e-06 57.0 136 29.4
Lj4g0026142 Lotus japonicus HOM05D002686 ORTHO05D003222 1.3e-06 57.0 141 29.1
Lalb_Chr13g0299321 Lupinus albus HOM05D002686 ORTHO05D003222 1.3e-06 57.0 141 31.2
EL10Ac8g19011 Beta vulgaris HOM05D002686 ORTHO05D003222 1.7e-06 56.6 97 33.0
BcaB01g04773 Brassica carinata HOM05D002686 ORTHO05D003222 1.7e-06 56.6 160 29.4
SEGI_38857 Sequoiadendron giganteum HOM05D002686 ORTHO05D003222 1.7e-06 56.6 116 34.5
Sc18g0002740 Simmondsia chinensis HOM05D002686 ORTHO05D003222 1.7e-06 56.6 130 30.8
BcaC04g19463 Brassica carinata HOM05D002686 ORTHO05D003222 2.9e-06 55.8 157 30.6
CAN.G1661.28 Capsicum annuum HOM05D002686 ORTHO05D003222 2.9e-06 55.8 95 33.7
AUR62025283 Chenopodium quinoa HOM05D002686 ORTHO05D003222 3.8e-06 55.5 157 29.9
Cre16.g673729 Chlamydomonas reinhardtii HOM05D002686 ORTHO05D006568 3.8e-06 55.5 110 37.3
Zm00001eb373960 Zea mays HOM05D002686 ORTHO05D003222 3.8e-06 55.5 97 33.0
A02p06460 Brassica napus HOM05D002686 ORTHO05D003222 5.0e-06 55.1 160 30.0
Gohir.A06G078700 Gossypium hirsutum HOM05D002686 ORTHO05D003222 5.0e-06 55.1 97 34.0
Sabra06G0108500 Salix brachista HOM05D002686 ORTHO05D003222 5.0e-06 55.1 97 34.0
Hund08835 Selenicereus undatus HOM05D002686 ORTHO05D003222 5.0e-06 55.1 134 30.6
AL6G32280 Arabidopsis lyrata HOM05D002686 ORTHO05D003222 6.5e-06 54.7 160 29.4
AT5G20720 Arabidopsis thaliana HOM05D002686 ORTHO05D003222 6.5e-06 54.7 160 29.4
A03p10230 Brassica napus HOM05D002686 ORTHO05D003222 6.5e-06 54.7 160 30.0
BNapus_Darmor_BZH_scaffold_38p01360 Brassica napus HOM05D002686 ORTHO05D003222 6.5e-06 54.7 160 30.0
BraA03t10332Z Brassica rapa HOM05D002686 ORTHO05D003222 6.5e-06 54.7 160 30.0
Lalb_Chr12g0200301 Lupinus albus HOM05D002686 ORTHO05D003222 6.5e-06 54.7 143 30.1
Os02g0781400 Oryza sativa ssp. japonica HOM05D002686 ORTHO05D003222 6.5e-06 54.7 107 31.8
BcaC03g13794 Brassica carinata HOM05D002686 ORTHO05D003222 8.5e-06 54.3 160 30.0
BolC2t07068H Brassica oleracea HOM05D002686 ORTHO05D003222 8.5e-06 54.3 160 30.0
Gohir.A09G207600 Gossypium hirsutum HOM05D002686 ORTHO05D003222 8.5e-06 54.3 129 31.0
Potri.006G138600 Populus trichocarpa HOM05D002686 ORTHO05D003222 8.5e-06 54.3 97 33.0


User provided reference genes

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