Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G749.9 Capsicum annuum HOM05D005898 ORTHO05D008629 8.5e-117 423.7 216 100.0
CAN.G749.7 Capsicum annuum HOM05D006683 ORTHO05D008629 1.4e-23 114.0 60 91.7
Nitab4.5_0003978g0050 Nicotiana tabacum HOM05D005898 ORTHO05D007493 6.9e-18 95.1 77 67.5
Peaxi162Scf00066g00224 Petunia axillaris HOM05D005898 ORTHO05D007493 2.6e-17 93.2 77 64.9
Manes.02G168700 Manihot esculenta HOM05D005898 ORTHO05D007493 3.4e-17 92.8 77 64.9
PGSC0003DMG400025321 Solanum tuberosum HOM05D005898 ORTHO05D007493 7.6e-17 91.7 77 63.6
Solyc04g057890.3 Solanum lycopersicum HOM05D005898 ORTHO05D007493 1.7e-16 90.5 77 62.3
Sopen04g025740 Solanum pennellii HOM05D005898 ORTHO05D007493 1.7e-16 90.5 77 62.3
Nitab4.5_0000317g0210 Nicotiana tabacum HOM05D005898 ORTHO05D007493 2.2e-16 90.1 77 63.6
Duzib041G0058 Durio zibethinus HOM05D005898 ORTHO05D007493 6.5e-16 88.6 77 58.4
CAN.G716.15 Capsicum annuum HOM05D005898 ORTHO05D007493 1.1e-15 87.8 77 61.0
TWI34G0248 Tripterygium wilfordii HOM05D005898 ORTHO05D007493 1.9e-15 87.0 77 59.7
Lj4C681T5 Lonicera japonica HOM05D005898 ORTHO05D007493 2.5e-15 86.7 77 58.4
Potri.005G182000 Populus trichocarpa HOM05D005898 ORTHO05D007493 3.2e-15 86.3 95 52.6
Sabra05G0138000 Salix brachista HOM05D005898 ORTHO05D007493 3.2e-15 86.3 95 50.5
Dinv27268 Davidia involucrata HOM05D005898 ORTHO05D007493 5.5e-15 85.5 77 59.7
A07p42830 Brassica napus HOM05D005898 ORTHO05D007493 7.1e-15 85.1 77 59.7
BraA07t31804Z Brassica rapa HOM05D005898 ORTHO05D007493 7.1e-15 85.1 77 59.7
CAN.G531.17 Capsicum annuum HOM05D005898 ORTHO05D007493 7.1e-15 85.1 77 59.7
Cpa.g.sc26.314 Carica papaya HOM05D005898 ORTHO05D007493 7.1e-15 85.1 97 50.5
COL.COLO4_35486 Corchorus olitorius HOM05D005898 ORTHO05D007493 7.1e-15 85.1 77 55.8
Thecc.08G133400 Theobroma cacao HOM05D005898 ORTHO05D007493 7.1e-15 85.1 77 57.1
Thhalv10019613m.g Eutrema salsugineum HOM05D005898 ORTHO05D007493 9.3e-15 84.7 138 41.3
BcaC08g47621 Brassica carinata HOM05D005898 ORTHO05D007493 1.2e-14 84.3 77 59.7
C06p51450 Brassica napus HOM05D005898 ORTHO05D007493 1.2e-14 84.3 77 59.7
BolC6t40163H Brassica oleracea HOM05D005898 ORTHO05D007493 1.2e-14 84.3 77 59.7
Sp5g32460 Schrenkiella parvula HOM05D005898 ORTHO05D007493 1.2e-14 84.3 77 58.4
AL2G37490 Arabidopsis lyrata HOM05D005898 ORTHO05D007493 2.1e-14 83.6 77 59.7
AT1G77290 Arabidopsis thaliana HOM05D005898 ORTHO05D007493 2.1e-14 83.6 77 59.7
PGSC0003DMG400003795 Solanum tuberosum HOM05D006683 ORTHO05D008629 2.1e-14 83.6 58 63.8
Atru.chr13.1575 Acer truncatum HOM05D005898 ORTHO05D007493 2.7e-14 83.2 77 55.8
Haze_17639 Corylus avellana HOM05D005898 ORTHO05D007493 2.7e-14 83.2 100 46.0
Cc10_g13730 Coffea canephora HOM05D005898 ORTHO05D007493 3.5e-14 82.8 77 57.1
Carub.0002s2417 Capsella rubella HOM05D005898 ORTHO05D007493 4.6e-14 82.4 77 58.4
PGSC0003DMG400003794 Solanum tuberosum HOM05D006683 ORTHO05D008629 4.6e-14 82.4 54 64.8
PGSC0003DMG400035387 Solanum tuberosum HOM05D006683 ORTHO05D008629 4.6e-14 82.4 54 64.8
Eucgr.E01005 Eucalyptus grandis HOM05D005898 ORTHO05D007493 7.9e-14 81.6 77 55.8
PGSC0003DMG400037968 Solanum tuberosum HOM05D006683 ORTHO05D008629 7.9e-14 81.6 56 62.5
DCAR_014367 Daucus carota HOM05D005898 ORTHO05D007493 1.0e-13 81.3 77 55.8
Eucgr.C00041 Eucalyptus grandis HOM05D005898 ORTHO05D007493 1.0e-13 81.3 100 50.0
CANSAT25G1205 Cannabis sativa HOM05D005898 ORTHO05D007493 1.3e-13 80.9 77 50.6
CARHR070800 Cardamine hirsuta HOM05D005898 ORTHO05D007493 1.3e-13 80.9 77 54.5
TAR381G0459 Trochodendron aralioides HOM05D005898 ORTHO05D007493 1.3e-13 80.9 77 53.2
Ah.05g169090 Amaranthus hybridus HOM05D005898 ORTHO05D007493 1.8e-13 80.5 77 53.2
Ciclev10002166m.g Citrus clementina HOM05D005898 ORTHO05D007493 1.8e-13 80.5 77 54.5
MELO3C010516.2 Cucumis melo HOM05D005898 ORTHO05D007493 1.8e-13 80.5 77 55.8
Glyma.14G155200 Glycine max HOM05D005898 ORTHO05D007493 2.3e-13 80.1 76 56.6
QL09p032362 Quercus lobata HOM05D005898 ORTHO05D007493 2.3e-13 80.1 100 44.0
Migut.C01068 Erythranthe guttata HOM05D005898 ORTHO05D007493 3.0e-13 79.7 139 36.7
Hma1.2p1_1121F.1_g259260 Hydrangea macrophylla HOM05D005898 ORTHO05D007493 3.0e-13 79.7 77 53.2
PSO528G0126 Papaver somniferum HOM05D005898 ORTHO05D007493 3.0e-13 79.7 77 54.5
Prupe.1G489200 Prunus persica HOM05D005898 ORTHO05D007493 3.0e-13 79.7 77 53.2
Actinidia29492 Actinidia chinensis HOM05D005898 ORTHO05D007493 3.9e-13 79.3 83 48.2
Ca_16611_v3 Cicer arietinum L. HOM05D005898 ORTHO05D007493 5.1e-13 79.0 95 48.4
ECA236G4352 Erigeron canadensis HOM05D005898 ORTHO05D007493 5.1e-13 79.0 77 51.9
THA.LOC104812081 Tarenaya hassleriana HOM05D005898 ORTHO05D007493 5.1e-13 79.0 78 56.4
CiPaw.15G031100 Carya illinoinensis HOM05D005898 ORTHO05D007493 6.7e-13 78.6 100 45.0
Glyma.13G034200 Glycine max HOM05D005898 ORTHO05D007493 8.7e-13 78.2 76 56.6
Oeu026373.1 Olea europaea HOM05D005898 ORTHO05D007493 8.7e-13 78.2 77 48.1
GSVIVG01008804001 Vitis vinifera HOM05D005898 ORTHO05D007493 8.7e-13 78.2 100 44.0
CSS0002345 Camellia sinensis var. sinensis HOM05D005898 ORTHO05D007493 1.1e-12 77.8 77 53.2
CSS0024013 Camellia sinensis var. sinensis HOM05D005898 ORTHO05D007493 1.1e-12 77.8 77 53.2
CsaV3_4G028000 Cucumis sativus L. HOM05D005898 ORTHO05D007493 1.1e-12 77.8 77 50.6
FvH4_2g27900 Fragaria vesca HOM05D005898 ORTHO05D007493 1.1e-12 77.8 77 51.9
FAN24G0310 Fragaria x ananassa HOM05D005898 ORTHO05D007493 1.1e-12 77.8 77 51.9
RcHm_v2.0_Chr6g0296751 Rosa chinensis HOM05D005898 ORTHO05D007493 1.1e-12 77.8 77 51.9
VMungo1309G0075 Vigna mungo HOM05D005898 ORTHO05D007493 1.1e-12 77.8 77 51.9
Aa31LG4G7300 Aethionema arabicum HOM05D005898 ORTHO05D007493 1.5e-12 77.4 77 54.5
MSTRG.1410 Avicennia marina HOM05D005898 ORTHO05D007493 1.5e-12 77.4 77 51.9
EL10Ac1g01360 Beta vulgaris HOM05D005898 ORTHO05D007493 1.5e-12 77.4 77 50.6
HanXRQChr02g0045111 Helianthus annuus HOM05D005898 ORTHO05D007493 1.5e-12 77.4 76 52.6
FAN20G2399 Fragaria x ananassa HOM05D005898 ORTHO05D007493 2.5e-12 76.6 77 51.9
PSO170G0207 Papaver somniferum HOM05D005898 ORTHO05D007493 2.5e-12 76.6 77 53.2
Psat5g084560 Pisum sativum HOM05D005898 ORTHO05D007493 2.5e-12 76.6 77 51.9
PGSC0003DMG400040306 Solanum tuberosum HOM05D006683 ORTHO05D008629 2.5e-12 76.6 71 50.7
FAN15G2418 Fragaria x ananassa HOM05D005898 ORTHO05D007493 3.3e-12 76.3 77 50.6
FAN15G2964 Fragaria x ananassa HOM05D005898 ORTHO05D007493 3.3e-12 76.3 77 50.6
Glyma.06G117800 Glycine max HOM05D005898 ORTHO05D007493 3.3e-12 76.3 77 53.2
Phvul.009G130200 Phaseolus vulgaris HOM05D005898 ORTHO05D007493 3.3e-12 76.3 76 53.9
PGR044G1855 Punica granatum HOM05D005898 ORTHO05D007493 3.3e-12 76.3 77 53.2
TPR.G21851 Trifolium pratense HOM05D005898 ORTHO05D007493 3.3e-12 76.3 77 49.4
vmacro20860 Vaccinium macrocarpon HOM05D005898 ORTHO05D007493 3.3e-12 76.3 77 53.2
ClCG11G016010 Citrullus lanatus HOM05D005898 ORTHO05D007493 4.3e-12 75.9 77 50.6
Gohir.A02G110700 Gossypium hirsutum HOM05D005898 ORTHO05D007493 4.3e-12 75.9 77 49.4
MD15G1133600 Malus domestica HOM05D005898 ORTHO05D007493 4.3e-12 75.9 84 46.4
Dinv14694 Davidia involucrata HOM05D005898 ORTHO05D007493 5.7e-12 75.5 73 54.8
AUR62007708 Chenopodium quinoa HOM05D005898 ORTHO05D007493 7.4e-12 75.1 77 50.6
Eucgr.B02072 Eucalyptus grandis HOM05D005898 ORTHO05D007493 7.4e-12 75.1 100 47.0
Lalb_Chr11g0066191 Lupinus albus HOM05D005898 ORTHO05D007493 7.4e-12 75.1 77 49.4
Gohir.D03G069006 Gossypium hirsutum HOM05D005898 ORTHO05D007493 9.6e-12 74.7 77 49.4
Gorai.013G108000 Gossypium raimondii HOM05D005898 ORTHO05D007493 9.6e-12 74.7 77 49.4
Phvul.001G068100 Phaseolus vulgaris HOM05D005898 ORTHO05D007493 9.6e-12 74.7 77 50.6
arahy.Tifrunner.gnm1.ann1.74JCE2 Arachis hypogaea HOM05D005898 ORTHO05D007493 1.6e-11 73.9 77 49.4
arahy.Tifrunner.gnm1.ann1.XM429X Arachis hypogaea HOM05D005898 ORTHO05D007493 1.6e-11 73.9 77 49.4
MBI06_g35214_MAGBIO Magnolia biondii HOM05D005898 ORTHO05D007493 1.6e-11 73.9 77 49.4
Lalb_Chr08g0241041 Lupinus albus HOM05D005898 ORTHO05D007493 2.1e-11 73.6 77 49.4
Medtr3g088635 Medicago truncatula HOM05D005898 ORTHO05D007493 2.1e-11 73.6 77 49.4
AUR62013433 Chenopodium quinoa HOM05D005898 ORTHO05D007493 2.8e-11 73.2 77 49.4
Lj4C682T8 Lonicera japonica HOM05D005898 ORTHO05D007493 2.8e-11 73.2 74 48.6
Lj1g0001609 Lotus japonicus HOM05D005898 ORTHO05D007493 2.8e-11 73.2 77 49.4
PGSC0003DMG400038781 Solanum tuberosum HOM05D006683 ORTHO05D008629 2.8e-11 73.2 56 57.1
VMungo0647G2141 Vigna mungo HOM05D005898 ORTHO05D007493 2.8e-11 73.2 77 49.4
Nn1g08950 Nelumbo nucifera HOM05D005898 ORTHO05D007493 6.3e-11 72.0 76 47.4
Sed0026006 Sechium edule HOM05D005898 ORTHO05D007493 6.3e-11 72.0 77 48.1
SGA_v2.0_scaffold52G18918 Striga asiatica HOM05D005898 ORTHO05D007493 6.3e-11 72.0 139 33.1
Sc26g0002800 Simmondsia chinensis HOM05D005898 ORTHO05D007493 8.2e-11 71.6 76 51.3
Lsat_1_v5_gn_1_7480 Lactuca sativa HOM05D005898 ORTHO05D007493 1.1e-10 71.2 77 48.1
Rhsim07G0179900 Rhododendron simsii HOM05D005898 ORTHO05D007493 1.1e-10 71.2 76 51.3
Os04g0435500 Oryza sativa ssp. japonica HOM05D005898 ORTHO05D007493 1.8e-10 70.5 77 46.8
Zm00001eb082540 Zea mays HOM05D005898 ORTHO05D007493 3.1e-10 69.7 77 45.5
Aqoxy6G00307 Aquilegia oxysepala HOM05D005898 ORTHO05D007493 4.1e-10 69.3 100 43.0
ATR0584G218 Amborella trichopoda HOM05D005898 ORTHO05D007493 1.2e-09 67.8 77 46.8
Eucgr.A01942 Eucalyptus grandis HOM05D005898 ORTHO05D007493 1.2e-09 67.8 91 46.2
Eucgr.H02194 Eucalyptus grandis HOM05D005898 ORTHO05D007493 1.2e-09 67.8 91 46.2
Eucgr.H02561 Eucalyptus grandis HOM05D005898 ORTHO05D007493 1.2e-09 67.8 91 46.2
Eucgr.J01273 Eucalyptus grandis HOM05D005898 ORTHO05D007493 1.2e-09 67.8 91 46.2
HPP92_005662 Vanilla planifolia HOM05D005898 ORTHO05D007493 2.6e-09 66.6 77 44.2
unitig_0.g2114 Utricularia gibba HOM05D005898 ORTHO05D007493 7.6e-09 65.1 73 45.2
CSS0035583 Camellia sinensis var. sinensis HOM05D005898 ORTHO05D007493 2.1e-06 57.0 77 42.9
Mapoly0029s0068 Marchantia polymorpha HOM05D005898 ORTHO05D007493 3.6e-06 56.2 95 35.8


User provided reference genes

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