Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G745.38 Capsicum annuum HOM05D003975 ORTHO05D009899 8.0e-41 169.9 78 100.0
CAN.G745.37 Capsicum annuum HOM05D003975 ORTHO05D009899 6.7e-40 166.8 78 98.7
PGSC0003DMG400019630 Solanum tuberosum HOM05D003975 ORTHO05D009899 1.4e-37 159.1 78 92.3
Solyc11g068810.2 Solanum lycopersicum HOM05D003975 ORTHO05D009899 5.3e-37 157.1 78 91.0
Sopen11g027530 Solanum pennellii HOM05D003975 ORTHO05D009899 5.3e-37 157.1 78 91.0
Nitab4.5_0000893g0020 Nicotiana tabacum HOM05D003975 ORTHO05D009899 2.0e-36 155.2 78 89.7
Nitab4.5_0001135g0190 Nicotiana tabacum HOM05D003975 ORTHO05D009899 1.7e-35 152.1 78 87.2
Peaxi162Scf00224g00092 Petunia axillaris HOM05D003975 ORTHO05D009899 5.0e-35 150.6 73 93.2
Sed0002680 Sechium edule HOM05D003975 ORTHO05D009899 4.7e-33 144.1 80 81.2
Hma1.2p1_0793F.1_g218650 Hydrangea macrophylla HOM05D003975 ORTHO05D009899 1.4e-32 142.5 78 79.5
SalBow6G3564 Salvia bowleyana HOM05D003975 ORTHO05D009899 5.2e-32 140.6 79 77.2
GSVIVG01036058001 Vitis vinifera HOM05D003975 ORTHO05D009899 5.2e-32 140.6 78 76.9
CSS0027551 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009899 6.8e-32 140.2 78 78.2
MELO3C014515.2 Cucumis melo HOM05D003975 ORTHO05D009899 6.8e-32 140.2 78 80.8
Thecc.09G275700 Theobroma cacao HOM05D003975 ORTHO05D009899 6.8e-32 140.2 79 79.7
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 8.8e-32 139.8 78 78.2
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 1.2e-31 139.4 78 78.2
Gorai.001G124000 Gossypium raimondii HOM05D003975 ORTHO05D009899 1.2e-31 139.4 79 79.7
MD03G1152900 Malus domestica HOM05D003975 ORTHO05D009899 1.2e-31 139.4 78 78.2
ClCG02G022390 Citrullus lanatus HOM05D003975 ORTHO05D009899 1.5e-31 139.0 81 77.8
RcHm_v2.0_Chr5g0047291 Rosa chinensis HOM05D003975 ORTHO05D009899 1.5e-31 139.0 78 76.9
Eucgr.J00540 Eucalyptus grandis HOM05D003975 ORTHO05D009899 2.6e-31 138.3 78 76.9
Thecc.09G155000 Theobroma cacao HOM05D003975 ORTHO05D009899 2.6e-31 138.3 79 78.5
Gohir.D07G115700 Gossypium hirsutum HOM05D003975 ORTHO05D009899 3.4e-31 137.9 79 78.5
Atru.chr3.3141 Acer truncatum HOM05D003975 ORTHO05D009899 7.5e-31 136.7 78 76.9
Dinv08130 Davidia involucrata HOM05D003975 ORTHO05D009899 9.8e-31 136.3 78 74.4
Duzib150G1666 Durio zibethinus HOM05D003975 ORTHO05D009899 2.8e-30 134.8 79 77.2
Migut.D02414 Erythranthe guttata HOM05D003975 ORTHO05D009899 3.7e-30 134.4 79 75.9
Gohir.A07G112200 Gossypium hirsutum HOM05D003975 ORTHO05D009899 3.7e-30 134.4 79 77.2
Prupe.6G140000 Prunus persica HOM05D003975 ORTHO05D009899 6.3e-30 133.7 78 73.1
Cfa009967 Carpinus fangiana HOM05D003975 ORTHO05D009899 8.3e-30 133.3 79 73.4
Cc01_g08600 Coffea canephora HOM05D003975 ORTHO05D009899 8.3e-30 133.3 81 74.1
CANSAT54G1521 Cannabis sativa HOM05D003975 ORTHO05D009899 1.1e-29 132.9 76 75.0
QL01p011344 Quercus lobata HOM05D003975 ORTHO05D009899 3.1e-29 131.3 78 71.8
Haze_23328 Corylus avellana HOM05D003975 ORTHO05D009899 4.1e-29 131.0 79 72.2
DCAR_013070 Daucus carota HOM05D003975 ORTHO05D009899 4.1e-29 131.0 80 72.5
unitig_0.g1469 Utricularia gibba HOM05D003975 ORTHO05D009899 5.4e-29 130.6 79 73.4
CsaV3_6G038520 Cucumis sativus L. HOM05D003975 ORTHO05D009899 7.0e-29 130.2 73 76.7
COL.COLO4_22656 Corchorus olitorius HOM05D003975 ORTHO05D009899 9.1e-29 129.8 86 69.8
TWI31G0968 Tripterygium wilfordii HOM05D003975 ORTHO05D009899 3.5e-28 127.9 78 75.6
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 4.5e-28 127.5 85 68.2
MBI01_g04527_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 1.0e-27 126.3 78 64.1
Nn6g34748 Nelumbo nucifera HOM05D003975 ORTHO05D009899 1.0e-27 126.3 81 66.7
PSO339G0200 Papaver somniferum HOM05D003975 ORTHO05D009899 2.2e-27 125.2 81 65.4
PSO384G0061 Papaver somniferum HOM05D003975 ORTHO05D009899 2.2e-27 125.2 81 65.4
Potri.004G201000 Populus trichocarpa HOM05D003975 ORTHO05D009899 2.2e-27 125.2 85 68.2
Potri.009G162200 Populus trichocarpa HOM05D003975 ORTHO05D009899 2.9e-27 124.8 85 67.1
TAR633G2299 Trochodendron aralioides HOM05D003975 ORTHO05D009899 3.8e-27 124.4 72 72.2
Sabra15G0053200 Salix brachista HOM05D003975 ORTHO05D009899 1.9e-26 122.1 87 63.2
AUR62011465 Chenopodium quinoa HOM05D003975 ORTHO05D009899 2.5e-26 121.7 78 62.8
ECA238G1997 Erigeron canadensis HOM05D003975 ORTHO05D009899 2.5e-26 121.7 78 70.5
Sabra15G0046300 Salix brachista HOM05D003975 ORTHO05D009899 2.5e-26 121.7 86 64.0
Sabra15G0052000 Salix brachista HOM05D003975 ORTHO05D009899 2.5e-26 121.7 86 64.0
Sabra15G0053900 Salix brachista HOM05D003975 ORTHO05D009899 2.5e-26 121.7 86 64.0
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 7.2e-26 120.2 85 63.5
Sabra15G0031600 Salix brachista HOM05D003975 ORTHO05D009899 7.2e-26 120.2 85 63.5
Sabra15G0048400 Salix brachista HOM05D003975 ORTHO05D009899 7.2e-26 120.2 85 63.5
Sabra15G0060100 Salix brachista HOM05D003975 ORTHO05D009899 7.2e-26 120.2 85 63.5
HanXRQChr09g0248811 Helianthus annuus HOM05D003975 ORTHO05D009899 9.4e-26 119.8 75 65.3
Lsat_1_v5_gn_2_56181 Lactuca sativa HOM05D000240 ORTHO05D001153 2.1e-25 118.6 81 65.4
Lalb_Chr09g0335081 Lupinus albus HOM05D003975 ORTHO05D009899 6.1e-25 117.1 79 68.4
Sc03g0003650 Simmondsia chinensis HOM05D003975 ORTHO05D009899 6.1e-25 117.1 78 64.1
ATR0772G086 Amborella trichopoda HOM05D003975 ORTHO05D009899 8.0e-25 116.7 83 60.2
Ciclev10029713m.g Citrus clementina HOM05D003975 ORTHO05D009899 8.0e-25 116.7 83 65.1
AUR62016590 Chenopodium quinoa HOM05D003975 ORTHO05D009899 1.8e-24 115.5 78 60.3
Aqoxy4G02677 Aquilegia oxysepala HOM05D003975 ORTHO05D009899 2.3e-24 115.2 85 58.8
Glyma.08G290000 Glycine max HOM05D003975 ORTHO05D009899 3.0e-24 114.8 78 65.4
THA.LOC104799562 Tarenaya hassleriana HOM05D003975 ORTHO05D009899 5.2e-24 114.0 80 65.0
Phvul.003G054000 Phaseolus vulgaris HOM05D003975 ORTHO05D009899 2.0e-23 112.1 85 61.2
arahy.Tifrunner.gnm1.ann1.QQFJ2J Arachis hypogaea HOM05D003975 ORTHO05D009899 3.4e-23 111.3 79 63.3
arahy.Tifrunner.gnm1.ann1.V52YDZ Arachis hypogaea HOM05D003975 ORTHO05D009899 3.4e-23 111.3 79 63.3
Ah.01g020290 Amaranthus hybridus HOM05D003975 ORTHO05D009899 5.7e-23 110.5 80 61.2
Glyma.18G134500 Glycine max HOM05D003975 ORTHO05D009899 9.8e-23 109.8 78 61.5
BcaC04g19558 Brassica carinata HOM05D003975 ORTHO05D009899 2.8e-22 108.2 81 60.5
C09p54430 Brassica napus HOM05D003975 ORTHO05D009899 2.8e-22 108.2 81 60.5
BolC9t58312H Brassica oleracea HOM05D003975 ORTHO05D009899 2.8e-22 108.2 81 60.5
A10p18580 Brassica napus HOM05D003975 ORTHO05D009899 3.7e-22 107.8 81 60.5
HPP92_009773 Vanilla planifolia HOM05D000917 ORTHO05D009899 1.4e-21 105.9 80 53.8
CARHR191340 Cardamine hirsuta HOM05D003975 ORTHO05D009899 1.8e-21 105.5 81 61.7
Sp6g23020 Schrenkiella parvula HOM05D003975 ORTHO05D009899 1.8e-21 105.5 81 61.7
AT5G22210 Arabidopsis thaliana HOM05D003975 ORTHO05D009899 2.4e-21 105.1 81 61.7
EL10Ac9g21860 Beta vulgaris HOM05D003975 ORTHO05D009899 2.4e-21 105.1 79 58.2
BraA10t43938Z Brassica rapa HOM05D003975 ORTHO05D009899 3.1e-21 104.8 81 59.3
HPP92_009742 Vanilla planifolia HOM05D000917 ORTHO05D000764 9.1e-21 103.2 81 53.1
BcaB08g36448 Brassica carinata HOM05D003975 ORTHO05D009899 1.2e-20 102.8 81 59.3
Carub.0006s1995 Capsella rubella HOM05D003975 ORTHO05D009899 2.0e-20 102.1 81 59.3
AL6G33210 Arabidopsis lyrata HOM05D003975 ORTHO05D009899 2.7e-20 101.7 81 60.5
TAR268G0001 Trochodendron aralioides HOM05D001423 ORTHO05D001412 1.7e-19 99.0 71 60.6
MBI04_g20761_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 5.2e-08 60.8 53 47.2
SEGI_31848 Sequoiadendron giganteum HOM05D003975 ORTHO05D009899 4.9e-06 54.3 47 51.1


User provided reference genes

Program Settings