Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G745.37 Capsicum annuum HOM05D003975 ORTHO05D009899 1.8e-40 168.7 78 100.0
CAN.G745.38 Capsicum annuum HOM05D003975 ORTHO05D009899 6.7e-40 166.8 78 98.7
PGSC0003DMG400019630 Solanum tuberosum HOM05D003975 ORTHO05D009899 3.7e-38 161.0 78 93.6
Solyc11g068810.2 Solanum lycopersicum HOM05D003975 ORTHO05D009899 1.4e-37 159.1 78 92.3
Sopen11g027530 Solanum pennellii HOM05D003975 ORTHO05D009899 1.4e-37 159.1 78 92.3
Nitab4.5_0000893g0020 Nicotiana tabacum HOM05D003975 ORTHO05D009899 5.3e-37 157.1 78 91.0
Nitab4.5_0001135g0190 Nicotiana tabacum HOM05D003975 ORTHO05D009899 4.5e-36 154.1 78 88.5
Peaxi162Scf00224g00092 Petunia axillaris HOM05D003975 ORTHO05D009899 1.3e-35 152.5 73 94.5
Hma1.2p1_0793F.1_g218650 Hydrangea macrophylla HOM05D003975 ORTHO05D009899 1.0e-32 142.9 78 79.5
SalBow6G3564 Salvia bowleyana HOM05D003975 ORTHO05D009899 1.4e-32 142.5 79 78.5
GSVIVG01036058001 Vitis vinifera HOM05D003975 ORTHO05D009899 1.4e-32 142.5 78 78.2
CSS0027551 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009899 1.8e-32 142.1 78 79.5
MELO3C014515.2 Cucumis melo HOM05D003975 ORTHO05D009899 1.8e-32 142.1 78 82.1
Thecc.09G275700 Theobroma cacao HOM05D003975 ORTHO05D009899 1.8e-32 142.1 79 81.0
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 2.3e-32 141.7 78 79.5
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 3.0e-32 141.4 78 79.5
ClCG02G022390 Citrullus lanatus HOM05D003975 ORTHO05D009899 4.0e-32 141.0 81 79.0
RcHm_v2.0_Chr5g0047291 Rosa chinensis HOM05D003975 ORTHO05D009899 4.0e-32 141.0 78 78.2
Sed0002680 Sechium edule HOM05D003975 ORTHO05D009899 4.0e-32 141.0 80 80.0
Eucgr.J00540 Eucalyptus grandis HOM05D003975 ORTHO05D009899 6.8e-32 140.2 78 78.2
Thecc.09G155000 Theobroma cacao HOM05D003975 ORTHO05D009899 6.8e-32 140.2 79 79.7
Gorai.001G124000 Gossypium raimondii HOM05D003975 ORTHO05D009899 8.8e-32 139.8 79 79.7
Atru.chr3.3141 Acer truncatum HOM05D003975 ORTHO05D009899 2.0e-31 138.7 78 78.2
Dinv08130 Davidia involucrata HOM05D003975 ORTHO05D009899 2.6e-31 138.3 78 75.6
Gohir.D07G115700 Gossypium hirsutum HOM05D003975 ORTHO05D009899 2.6e-31 138.3 79 78.5
Duzib150G1666 Durio zibethinus HOM05D003975 ORTHO05D009899 7.5e-31 136.7 79 78.5
Migut.D02414 Erythranthe guttata HOM05D003975 ORTHO05D009899 9.8e-31 136.3 79 77.2
MD03G1152900 Malus domestica HOM05D003975 ORTHO05D009899 9.8e-31 136.3 78 76.9
Cfa009967 Carpinus fangiana HOM05D003975 ORTHO05D009899 2.2e-30 135.2 79 74.7
Cc01_g08600 Coffea canephora HOM05D003975 ORTHO05D009899 2.2e-30 135.2 81 75.3
Gohir.A07G112200 Gossypium hirsutum HOM05D003975 ORTHO05D009899 2.8e-30 134.8 79 77.2
CANSAT54G1521 Cannabis sativa HOM05D003975 ORTHO05D009899 8.3e-30 133.3 76 75.0
QL01p011344 Quercus lobata HOM05D003975 ORTHO05D009899 8.3e-30 133.3 78 73.1
Haze_23328 Corylus avellana HOM05D003975 ORTHO05D009899 1.1e-29 132.9 79 73.4
DCAR_013070 Daucus carota HOM05D003975 ORTHO05D009899 1.1e-29 132.9 80 73.8
CsaV3_6G038520 Cucumis sativus L. HOM05D003975 ORTHO05D009899 1.8e-29 132.1 73 78.1
Prupe.6G140000 Prunus persica HOM05D003975 ORTHO05D009899 5.4e-29 130.6 78 71.8
COL.COLO4_22656 Corchorus olitorius HOM05D003975 ORTHO05D009899 9.1e-29 129.8 86 69.8
TWI31G0968 Tripterygium wilfordii HOM05D003975 ORTHO05D009899 9.1e-29 129.8 78 76.9
MBI01_g04527_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 2.7e-28 128.3 78 65.4
Nn6g34748 Nelumbo nucifera HOM05D003975 ORTHO05D009899 2.7e-28 128.3 81 67.9
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 3.5e-28 127.9 85 68.2
unitig_0.g1469 Utricularia gibba HOM05D003975 ORTHO05D009899 4.5e-28 127.5 79 72.2
PSO339G0200 Papaver somniferum HOM05D003975 ORTHO05D009899 5.9e-28 127.1 81 66.7
PSO384G0061 Papaver somniferum HOM05D003975 ORTHO05D009899 5.9e-28 127.1 81 66.7
Potri.004G201000 Populus trichocarpa HOM05D003975 ORTHO05D009899 5.9e-28 127.1 85 69.4
Potri.009G162200 Populus trichocarpa HOM05D003975 ORTHO05D009899 7.7e-28 126.7 85 68.2
TAR633G2299 Trochodendron aralioides HOM05D003975 ORTHO05D009899 1.3e-27 125.9 72 73.6
Sabra15G0053200 Salix brachista HOM05D003975 ORTHO05D009899 5.0e-27 124.0 87 64.4
Sabra15G0046300 Salix brachista HOM05D003975 ORTHO05D009899 8.5e-27 123.2 86 65.1
Sabra15G0052000 Salix brachista HOM05D003975 ORTHO05D009899 8.5e-27 123.2 86 65.1
Sabra15G0053900 Salix brachista HOM05D003975 ORTHO05D009899 8.5e-27 123.2 86 65.1
ECA238G1997 Erigeron canadensis HOM05D003975 ORTHO05D009899 1.9e-26 122.1 78 70.5
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 1.9e-26 122.1 85 64.7
Sabra15G0031600 Salix brachista HOM05D003975 ORTHO05D009899 1.9e-26 122.1 85 64.7
Sabra15G0048400 Salix brachista HOM05D003975 ORTHO05D009899 1.9e-26 122.1 85 64.7
Sabra15G0060100 Salix brachista HOM05D003975 ORTHO05D009899 1.9e-26 122.1 85 64.7
HanXRQChr09g0248811 Helianthus annuus HOM05D003975 ORTHO05D009899 2.5e-26 121.7 75 66.7
Lsat_1_v5_gn_2_56181 Lactuca sativa HOM05D000240 ORTHO05D001153 5.5e-26 120.6 81 66.7
Sc03g0003650 Simmondsia chinensis HOM05D003975 ORTHO05D009899 1.6e-25 119.0 78 65.4
ATR0772G086 Amborella trichopoda HOM05D003975 ORTHO05D009899 2.1e-25 118.6 83 61.4
AUR62011465 Chenopodium quinoa HOM05D003975 ORTHO05D009899 2.1e-25 118.6 78 61.5
Ciclev10029713m.g Citrus clementina HOM05D003975 ORTHO05D009899 2.1e-25 118.6 83 66.3
Lalb_Chr09g0335081 Lupinus albus HOM05D003975 ORTHO05D009899 2.7e-25 118.2 79 68.4
Aqoxy4G02677 Aquilegia oxysepala HOM05D003975 ORTHO05D009899 6.1e-25 117.1 85 60.0
Glyma.08G290000 Glycine max HOM05D003975 ORTHO05D009899 1.4e-24 115.9 78 65.4
THA.LOC104799562 Tarenaya hassleriana HOM05D003975 ORTHO05D009899 5.2e-24 114.0 80 65.0
Phvul.003G054000 Phaseolus vulgaris HOM05D003975 ORTHO05D009899 8.8e-24 113.2 85 61.2
Ah.01g020290 Amaranthus hybridus HOM05D003975 ORTHO05D009899 1.5e-23 112.5 80 62.5
arahy.Tifrunner.gnm1.ann1.QQFJ2J Arachis hypogaea HOM05D003975 ORTHO05D009899 1.5e-23 112.5 79 63.3
arahy.Tifrunner.gnm1.ann1.V52YDZ Arachis hypogaea HOM05D003975 ORTHO05D009899 1.5e-23 112.5 79 63.3
AUR62016590 Chenopodium quinoa HOM05D003975 ORTHO05D009899 1.5e-23 112.5 78 59.0
Glyma.18G134500 Glycine max HOM05D003975 ORTHO05D009899 4.4e-23 110.9 78 61.5
BcaC04g19558 Brassica carinata HOM05D003975 ORTHO05D009899 7.5e-23 110.2 81 61.7
C09p54430 Brassica napus HOM05D003975 ORTHO05D009899 7.5e-23 110.2 81 61.7
BolC9t58312H Brassica oleracea HOM05D003975 ORTHO05D009899 7.5e-23 110.2 81 61.7
A10p18580 Brassica napus HOM05D003975 ORTHO05D009899 9.8e-23 109.8 81 61.7
CARHR191340 Cardamine hirsuta HOM05D003975 ORTHO05D009899 4.9e-22 107.5 81 63.0
Sp6g23020 Schrenkiella parvula HOM05D003975 ORTHO05D009899 4.9e-22 107.5 81 63.0
AT5G22210 Arabidopsis thaliana HOM05D003975 ORTHO05D009899 6.3e-22 107.1 81 63.0
EL10Ac9g21860 Beta vulgaris HOM05D003975 ORTHO05D009899 6.3e-22 107.1 79 59.5
BraA10t43938Z Brassica rapa HOM05D003975 ORTHO05D009899 8.3e-22 106.7 81 60.5
HPP92_009773 Vanilla planifolia HOM05D000917 ORTHO05D009899 1.1e-21 106.3 80 53.8
BcaB08g36448 Brassica carinata HOM05D003975 ORTHO05D009899 3.1e-21 104.8 81 60.5
Carub.0006s1995 Capsella rubella HOM05D003975 ORTHO05D009899 5.4e-21 104.0 81 60.5
AL6G33210 Arabidopsis lyrata HOM05D003975 ORTHO05D009899 7.0e-21 103.6 81 61.7
HPP92_009742 Vanilla planifolia HOM05D000917 ORTHO05D000764 7.0e-21 103.6 81 53.1
TAR268G0001 Trochodendron aralioides HOM05D001423 ORTHO05D001412 4.5e-20 100.9 71 62.0
MBI04_g20761_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 1.5e-07 59.3 47 46.8
SEGI_31848 Sequoiadendron giganteum HOM05D003975 ORTHO05D009899 3.7e-06 54.7 47 51.1


User provided reference genes

Program Settings