Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G74.23 Capsicum annuum HOM05D008003 ORTHO05D010079 1.0e-97 360.1 187 100.0
Nitab4.5_0003884g0080 Nicotiana tabacum HOM05D008003 ORTHO05D010079 1.4e-75 286.6 187 80.2
Solyc04g008080.1 Solanum lycopersicum HOM05D008003 ORTHO05D010079 4.1e-75 285.0 183 82.0
Peaxi162Scf00337g00617 Petunia axillaris HOM05D008003 ORTHO05D010079 2.6e-66 255.8 179 74.9
Nitab4.5_0012105g0050 Nicotiana tabacum HOM05D008003 ORTHO05D010079 2.3e-62 242.7 153 83.0
QL02p007150 Quercus lobata HOM05D008003 ORTHO05D010079 8.8e-54 214.2 188 59.0
Duzib116G0363 Durio zibethinus HOM05D008003 ORTHO05D010079 2.0e-53 213.0 189 61.9
PGSC0003DMG400029513 Solanum tuberosum HOM05D005814 ORTHO05D006821 2.6e-53 212.6 131 83.2
Cc10_g03530 Coffea canephora HOM05D000499 ORTHO05D007471 2.2e-52 209.5 186 61.3
RcHm_v2.0_Chr6g0294451 Rosa chinensis HOM05D008003 ORTHO05D010079 2.2e-52 209.5 183 60.7
Atru.chr13.573 Acer truncatum HOM05D008003 ORTHO05D010079 4.8e-52 208.4 193 59.1
Haze_17611 Corylus avellana HOM05D008003 ORTHO05D010079 6.3e-52 208.0 188 60.1
Thecc.08G020300 Theobroma cacao HOM05D008003 ORTHO05D010079 8.3e-52 207.6 185 60.5
Gohir.D05G200500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 1.8e-51 206.5 187 56.7
Gorai.009G205800 Gossypium raimondii HOM05D008003 ORTHO05D010079 1.8e-51 206.5 187 56.7
Cfa018459 Carpinus fangiana HOM05D008003 ORTHO05D010079 2.4e-51 206.1 187 59.9
FvH4_2g26081 Fragaria vesca HOM05D008003 ORTHO05D010079 4.1e-51 205.3 183 59.6
COL.COLO4_26389 Corchorus olitorius HOM05D000499 ORTHO05D007471 1.6e-50 203.4 177 61.0
Hma1.2p1_0260F.1_g104350 Hydrangea macrophylla HOM05D008003 ORTHO05D010079 2.7e-50 202.6 185 59.5
CiPaw.16G052800 Carya illinoinensis HOM05D008003 ORTHO05D010079 2.9e-49 199.1 190 57.4
MD11G1306400 Malus domestica HOM05D008003 ORTHO05D010079 3.8e-49 198.7 197 55.8
Duzib116G0025 Durio zibethinus HOM05D008003 ORTHO05D010079 5.0e-49 198.4 181 59.7
Manes.05G165700 Manihot esculenta HOM05D008003 ORTHO05D010079 3.2e-48 195.7 187 57.2
Migut.N02677 Erythranthe guttata HOM05D000499 ORTHO05D007471 1.6e-47 193.4 186 57.5
CANSAT56G3107 Cannabis sativa HOM05D008003 ORTHO05D010079 3.6e-47 192.2 195 56.4
Nn5g29446 Nelumbo nucifera HOM05D008003 ORTHO05D010079 1.0e-46 190.7 189 53.4
CSS0033209 Camellia sinensis var. sinensis HOM05D008003 ORTHO05D010079 1.4e-46 190.3 191 58.6
PGR031G0927 Punica granatum HOM05D008003 ORTHO05D010079 1.8e-46 189.9 189 56.1
TWI36G0609 Tripterygium wilfordii HOM05D008003 ORTHO05D010079 3.0e-46 189.1 186 54.8
Oeu004673.1 Olea europaea HOM05D008003 ORTHO05D010079 5.2e-46 188.3 184 58.7
SGA_v2.0_scaffold33G13535 Striga asiatica HOM05D008003 ORTHO05D010079 6.8e-46 188.0 186 58.6
Sed0001684 Sechium edule HOM05D008003 ORTHO05D010079 2.0e-45 186.4 180 56.1
Prupe.8G265000 Prunus persica HOM05D008003 ORTHO05D010079 4.4e-45 185.3 196 56.6
MD03G1292000 Malus domestica HOM05D008003 ORTHO05D010079 1.7e-44 183.3 197 54.8
GSVIVG01009625001 Vitis vinifera HOM05D000499 ORTHO05D007471 2.2e-44 183.0 181 55.8
Lalb_Chr14g0370901 Lupinus albus HOM05D008003 ORTHO05D010079 2.8e-44 182.6 186 53.2
MBI16_g13167_MAGBIO Magnolia biondii HOM05D008003 ORTHO05D010079 4.9e-44 181.8 187 54.0
Aqoxy5G01740 Aquilegia oxysepala HOM05D008003 ORTHO05D010079 1.4e-43 180.3 187 54.0
Ca_17236_v3 Cicer arietinum L. HOM05D008003 ORTHO05D010079 1.4e-43 180.3 182 54.9
HanXRQChr02g0045861 Helianthus annuus HOM05D008003 ORTHO05D010079 1.8e-43 179.9 183 53.6
Lsat_1_v5_gn_1_19420 Lactuca sativa HOM05D008003 ORTHO05D010079 1.8e-43 179.9 187 54.5
MELO3C012606.2 Cucumis melo HOM05D008003 ORTHO05D010079 2.4e-43 179.5 182 53.3
PSO170G4120 Papaver somniferum HOM05D008003 ORTHO05D010079 3.1e-43 179.1 184 53.8
Sabra02G0103400 Salix brachista HOM05D008003 ORTHO05D010079 2.0e-42 176.4 181 56.4
Cpa.g.sc64.35 Carica papaya HOM05D008003 ORTHO05D010079 3.5e-42 175.6 172 54.1
TPR.G12880 Trifolium pratense HOM05D008003 ORTHO05D010079 3.5e-42 175.6 181 53.6
Potri.002G131500 Populus trichocarpa HOM05D008003 ORTHO05D010079 5.9e-42 174.9 192 52.1
SalBow1G6207 Salvia bowleyana HOM05D008003 ORTHO05D010079 5.9e-42 174.9 179 56.4
Ciclev10002654m.g Citrus clementina HOM05D008003 ORTHO05D010079 7.7e-42 174.5 186 53.8
SalBow1G7493 Salvia bowleyana HOM05D008003 ORTHO05D010079 1.7e-41 173.3 179 55.9
DCAR_020952 Daucus carota HOM05D000499 ORTHO05D007471 6.6e-41 171.4 180 53.9
Glyma.05G242100 Glycine max HOM05D008003 ORTHO05D010079 6.6e-41 171.4 189 52.9
Medtr8g106450 Medicago truncatula HOM05D008003 ORTHO05D010079 1.9e-40 169.9 181 51.4
PSO700G0197 Papaver somniferum HOM05D008003 ORTHO05D010079 1.9e-40 169.9 191 51.3
Lj2g0009988 Lotus japonicus HOM05D008003 ORTHO05D010079 9.5e-40 167.5 184 51.1
AUR62033864 Chenopodium quinoa HOM05D008003 ORTHO05D010079 1.2e-39 167.2 186 50.5
Gohir.A05G197500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 3.6e-39 165.6 143 56.6
EL10As22g24222 Beta vulgaris HOM05D008003 ORTHO05D010079 6.1e-39 164.9 186 50.5
CsaV3_7G022920 Cucumis sativus L. HOM05D007284 ORTHO05D009303 1.4e-38 163.7 163 52.1
AUR62040074 Chenopodium quinoa HOM05D008003 ORTHO05D010079 5.7e-37 158.3 171 50.3
ECA247G3275 Erigeron canadensis HOM05D000264 ORTHO05D000152 3.2e-35 152.5 164 51.8
Medtr8g106405 Medicago truncatula HOM05D008003 ORTHO05D010079 3.2e-35 152.5 150 51.3
Phvul.002G325400 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 3.2e-35 152.5 185 48.1
Carub.0008s0637 Capsella rubella HOM05D008003 ORTHO05D010079 4.1e-35 152.1 199 45.7
VMungo0251G2996 Vigna mungo HOM05D008003 ORTHO05D010079 4.1e-35 152.1 183 49.2
AT5G42655 Arabidopsis thaliana HOM05D008003 ORTHO05D010079 2.0e-34 149.8 200 45.0
Phvul.002G325500 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 3.5e-34 149.1 185 46.5
AL8G18550 Arabidopsis lyrata HOM05D008003 ORTHO05D010079 4.6e-34 148.7 198 44.9
arahy.Tifrunner.gnm1.ann1.M7IFVU Arachis hypogaea HOM05D008003 ORTHO05D010079 1.0e-33 147.5 197 46.2
A02p27430 Brassica napus HOM05D008003 ORTHO05D010079 3.0e-33 146.0 200 43.0
BolC2t10386H Brassica oleracea HOM05D008003 ORTHO05D010079 3.0e-33 146.0 200 43.0
BraA02t07771Z Brassica rapa HOM05D008003 ORTHO05D010079 3.0e-33 146.0 200 43.0
BcaB07g30606 Brassica carinata HOM05D008003 ORTHO05D010079 3.9e-33 145.6 199 44.2
THA.LOC104803393 Tarenaya hassleriana HOM05D008003 ORTHO05D010079 3.9e-33 145.6 175 47.4
Sp2g07120 Schrenkiella parvula HOM05D008003 ORTHO05D010079 6.6e-33 144.8 199 43.7
CARHR181570 Cardamine hirsuta HOM05D000499 ORTHO05D007471 8.6e-33 144.4 194 43.3
BcaC03g16515 Brassica carinata HOM05D008003 ORTHO05D010079 3.3e-32 142.5 193 42.0
C02p43340 Brassica napus HOM05D008003 ORTHO05D010079 3.3e-32 142.5 193 42.0
Thhalv10019186m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 4.3e-32 142.1 198 42.4
SEGI_14506 Sequoiadendron giganteum HOM05D008003 ORTHO05D010079 1.4e-27 127.1 189 39.2
ATR0733G062 Amborella trichopoda HOM05D008003 ORTHO05D010079 1.6e-26 123.6 180 41.7
Thhalv10003357m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 8.9e-22 107.8 123 48.0
Ah.05g169480 Amaranthus hybridus HOM05D008003 ORTHO05D010079 8.3e-20 101.3 182 41.2
Zm00001eb056600 Zea mays HOM05D008003 ORTHO05D010079 6.2e-15 85.1 167 36.5
unitig_32.g11229 Utricularia gibba HOM05D000180 ORTHO05D000099 1.2e-07 60.8 188 31.9
VMungo1215G2518 Vigna mungo HOM05D000180 ORTHO05D000099 1.4e-06 57.4 105 35.2
Cc02_g35990 Coffea canephora HOM05D000180 ORTHO05D000099 8.9e-06 54.7 116 32.8


User provided reference genes

Program Settings