Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 0.0e+00 1150.2 537 100.0
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 3.1e-269 931.4 497 88.5
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 9.0e-269 929.9 497 88.1
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 1.5e-268 929.1 497 87.9
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 7.7e-260 900.2 493 85.8
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 2.0e-247 859.0 524 79.0
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 4.4e-247 857.8 485 82.1
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 1.3e-246 856.3 494 80.2
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 1.8e-245 852.4 496 80.6
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 3.8e-243 844.7 497 79.3
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 5.5e-242 840.9 506 78.3
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.6e-241 839.3 484 80.4
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 3.0e-240 835.1 496 77.4
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 4.0e-240 834.7 493 78.9
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 4.0e-240 834.7 484 79.3
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 1.3e-238 829.7 478 79.5
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 6.3e-238 827.4 479 79.1
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 1.4e-237 826.2 475 80.6
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 1.3e-235 819.7 470 80.9
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 3.8e-235 818.1 483 77.4
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 6.5e-235 817.4 479 79.7
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 2.5e-234 815.5 482 77.6
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 2.5e-234 815.5 479 78.5
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 4.2e-234 814.7 510 75.3
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 9.4e-234 813.5 491 76.6
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 1.2e-233 813.1 479 78.5
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 2.1e-233 812.4 486 77.0
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 3.6e-233 811.6 479 78.1
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 3.6e-233 811.6 490 77.3
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 2.3e-232 808.9 490 76.3
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 2.3e-232 808.9 489 75.7
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 4.0e-232 808.1 473 78.2
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 6.8e-232 807.4 475 77.9
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 1.2e-231 806.6 479 78.1
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 1.5e-231 806.2 527 72.3
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 1.5e-231 806.2 527 72.3
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 2.0e-231 805.8 475 78.5
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 3.4e-231 805.1 477 77.1
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 5.7e-231 804.3 487 74.7
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 5.7e-231 804.3 487 75.2
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 7.5e-231 803.9 469 79.3
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 1.7e-230 802.7 465 79.6
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 2.8e-230 802.0 472 77.3
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 4.9e-230 801.2 497 75.3
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 6.3e-230 800.8 464 78.7
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.1e-229 800.0 491 74.1
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 1.8e-229 799.3 470 78.5
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 4.1e-229 798.1 476 77.7
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 1.2e-228 796.6 484 76.4
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 1.6e-228 796.2 489 75.5
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 7.7e-228 793.9 465 77.8
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 2.9e-227 792.0 465 77.8
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 6.6e-227 790.8 489 75.5
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 6.6e-227 790.8 471 77.5
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 4.2e-226 788.1 465 76.8
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 9.5e-226 786.9 471 76.4
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 2.8e-225 785.4 471 76.0
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 8.0e-225 783.9 475 75.6
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 1.0e-224 783.5 471 75.8
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 1.0e-224 783.5 473 75.7
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 2.3e-224 782.3 481 74.8
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 3.0e-224 781.9 471 75.4
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 3.0e-224 781.9 471 75.4
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 6.8e-224 780.8 520 69.8
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 8.9e-224 780.4 471 75.6
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 1.2e-223 780.0 471 75.6
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 1.2e-223 780.0 481 74.2
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 1.5e-223 779.6 468 76.5
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 2.0e-223 779.2 486 74.7
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 2.6e-223 778.9 463 77.1
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 2.9e-222 775.4 469 76.5
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 6.3e-222 774.2 478 74.7
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 1.1e-221 773.5 471 75.4
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 1.4e-221 773.1 481 73.6
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 9.2e-221 770.4 477 74.6
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 1.2e-220 770.0 463 76.2
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 2.7e-220 768.8 463 76.7
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 3.5e-220 768.5 478 75.3
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 3.5e-220 768.5 478 75.3
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 4.6e-220 768.1 472 75.4
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 7.8e-220 767.3 478 74.3
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 2.3e-219 765.8 463 76.7
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 3.3e-218 761.9 490 73.3
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 4.7e-217 758.1 477 73.6
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 8.0e-217 757.3 529 68.6
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 8.0e-217 757.3 463 75.4
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 1.5e-215 753.1 472 72.5
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 2.3e-208 729.2 426 81.2
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 2.6e-207 725.7 498 68.9
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 6.4e-206 721.1 467 71.9
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 1.3e-203 713.4 469 71.0
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 9.5e-202 707.2 428 76.6
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 1.2e-201 706.8 479 69.5
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 4.7e-201 704.9 402 78.6
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 1.1e-200 703.7 412 79.1
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 1.3e-190 670.2 466 67.2
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 6.6e-187 657.9 453 66.7
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 3.3e-186 655.6 478 66.3
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 2.1e-185 652.9 472 66.3
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 2.8e-185 652.5 468 65.6
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 1.3e-169 600.5 341 78.3
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 2.8e-169 599.4 313 86.6
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 3.7e-169 599.0 479 59.7
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 2.6e-167 592.8 313 84.3
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 3.2e-157 559.3 484 57.0
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 8.7e-155 551.2 300 82.0
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 5.0e-150 535.4 407 64.6
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 1.2e-148 530.8 487 54.8
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 6.5e-126 455.3 300 70.3
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 2.2e-81 307.4 194 74.2
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 1.3e-70 271.6 369 44.7
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 1.1e-69 268.5 198 64.6
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 4.3e-69 266.5 255 54.5
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 1.6e-68 264.6 202 62.9
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 6.2e-68 262.7 120 96.7
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 6.9e-67 259.2 137 83.9
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 3.2e-64 250.4 133 83.5
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 5.1e-62 243.0 221 60.2
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 2.8e-60 237.3 172 66.3
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 2.2e-57 227.6 172 64.0
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 7.4e-53 212.6 124 76.6
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 4.2e-48 196.8 119 76.5
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 7.9e-47 192.6 252 48.0
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 1.1e-32 145.6 84 76.2
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 2.6e-26 124.4 105 55.2
SEGI_23248 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 2.5e-24 117.9 68 73.5
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 2.1e-23 114.8 62 80.6
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 6.1e-23 113.2 61 80.3
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 2.3e-22 111.3 181 37.6
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 3.9e-22 110.5 105 52.4
CAN.G534.13 Capsicum annuum HOM05D000103 ORTHO05D000049 4.7e-15 87.0 41 100.0
CAN.G396.17 Capsicum annuum HOM05D001433 ORTHO05D005172 6.1e-15 86.7 41 97.6
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 1.8e-14 85.1 40 97.5
CAN.G170.42 Capsicum annuum HOM05D002353 ORTHO05D002461 2.3e-14 84.7 41 97.6
CAN.G1227.3 Capsicum annuum HOM05D000185 ORTHO05D000017 5.2e-14 83.6 41 95.1
CAN.G1549.18 Capsicum annuum HOM05D001545 ORTHO05D001600 1.2e-13 82.4 41 92.7
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 1.5e-13 82.0 73 57.5
CAN.G732.11 Capsicum annuum HOM05D003152 ORTHO05D004094 1.5e-13 82.0 41 92.7
CAN.G1282.8 Capsicum annuum HOM05D001065 ORTHO05D002020 2.0e-13 81.6 39 94.9
CAN.G357.5 Capsicum annuum HOM05D000185 ORTHO05D000105 3.1e-11 74.3 39 84.6
CAN.G3.32 Capsicum annuum HOM05D000185 ORTHO05D000105 7.0e-11 73.2 39 87.2
CAN.G308.31 Capsicum annuum HOM05D000185 ORTHO05D000105 4.5e-10 70.5 39 79.5
HPP92_003866 Vanilla planifolia HOM05D006017 ORTHO05D007821 5.9e-10 70.1 54 61.1
CAN.G20.3 Capsicum annuum HOM05D000156 ORTHO05D001290 7.7e-10 69.7 40 77.5
CAN.G771.73 Capsicum annuum HOM05D000170 ORTHO05D000159 1.0e-09 69.3 39 79.5
CAN.G160.3 Capsicum annuum HOM05D000185 ORTHO05D000105 1.3e-09 68.9 36 86.1
CAN.G2547.1 Capsicum annuum HOM05D000120 ORTHO05D000068 1.3e-09 68.9 39 84.6
CAN.G980.1 Capsicum annuum HOM05D000541 ORTHO05D000137 1.7e-09 68.6 32 93.8
CAN.G250.6 Capsicum annuum HOM05D000167 ORTHO05D000465 2.2e-09 68.2 33 97.0
CAN.G407.78 Capsicum annuum HOM05D002526 ORTHO05D000105 2.9e-09 67.8 36 86.1
PGSC0003DMG400019390 Solanum tuberosum HOM05D000185 ORTHO05D000105 2.9e-09 67.8 39 74.4
CAN.G353.23 Capsicum annuum HOM05D000061 ORTHO05D000050 3.8e-09 67.4 39 79.5
CAN.G219.35 Capsicum annuum HOM05D000037 ORTHO05D000648 6.5e-09 66.6 39 79.5
CAN.G672.6 Capsicum annuum HOM05D000185 ORTHO05D000105 6.5e-09 66.6 34 85.3
CAN.G307.24 Capsicum annuum HOM05D001607 ORTHO05D001893 8.5e-09 66.2 31 96.8
CAN.G553.12 Capsicum annuum HOM05D003203 ORTHO05D003526 8.5e-09 66.2 31 96.8
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 1.1e-08 65.9 30 100.0
CAN.G137.27 Capsicum annuum HOM05D000185 ORTHO05D000105 1.1e-08 65.9 30 100.0
CAN.G1510.3 Capsicum annuum HOM05D000185 ORTHO05D000105 1.1e-08 65.9 30 100.0
CAN.G336.2 Capsicum annuum HOM05D001419 ORTHO05D001376 1.1e-08 65.9 30 100.0
CAN.G383.13 Capsicum annuum HOM05D000185 ORTHO05D000105 1.1e-08 65.9 30 100.0
CAN.G417.1 Capsicum annuum HOM05D000185 ORTHO05D000105 1.1e-08 65.9 30 100.0
CAN.G608.9 Capsicum annuum HOM05D000011 ORTHO05D000018 1.1e-08 65.9 30 100.0
CAN.G64.10 Capsicum annuum HOM05D000382 ORTHO05D000391 1.1e-08 65.9 30 100.0
CAN.G64.2 Capsicum annuum HOM05D000185 ORTHO05D000105 1.1e-08 65.9 30 100.0
CAN.G93.37 Capsicum annuum HOM05D000337 ORTHO05D000297 1.1e-08 65.9 30 100.0
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 2.5e-08 64.7 40 72.5
CAN.G1538.3 Capsicum annuum HOM05D003403 ORTHO05D003889 4.2e-08 63.9 35 80.0
CAN.G504.85 Capsicum annuum HOM05D001232 ORTHO05D001073 4.2e-08 63.9 36 75.0
CAN.G642.6 Capsicum annuum HOM05D000423 ORTHO05D000284 1.2e-07 62.4 32 84.4
CAN.G631.3 Capsicum annuum HOM05D001528 ORTHO05D002760 3.6e-07 60.8 30 93.3
CAN.G130.1 Capsicum annuum HOM05D000310 ORTHO05D000509 4.7e-07 60.5 62 51.6
CAN.G945.1 Capsicum annuum HOM05D002944 ORTHO05D003377 6.1e-07 60.1 31 90.3
CAN.G798.12 Capsicum annuum HOM05D003697 ORTHO05D005452 1.0e-06 59.3 31 87.1
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 1.4e-06 58.9 48 58.3
CAN.G181.33 Capsicum annuum HOM05D000185 ORTHO05D003524 1.8e-06 58.5 39 74.4
CAN.G46.18 Capsicum annuum HOM05D000087 ORTHO05D000793 1.8e-06 58.5 31 87.1
CAN.G241.10 Capsicum annuum HOM05D000011 ORTHO05D001721 2.3e-06 58.2 36 72.2
PGSC0003DMG400001073 Solanum tuberosum HOM05D000185 ORTHO05D000105 3.0e-06 57.8 35 74.3
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 4.0e-06 57.4 30 90.0
CAN.G569.36 Capsicum annuum HOM05D001745 ORTHO05D001772 6.8e-06 56.6 29 89.7
CAN.G811.6 Capsicum annuum HOM05D000185 ORTHO05D000105 6.8e-06 56.6 36 80.6


User provided reference genes

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