Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G739.1 Capsicum annuum HOM05D001309 ORTHO05D000385 3.1e-53 211.5 103 100.0
PGSC0003DMG400004327 Solanum tuberosum HOM05D001309 ORTHO05D000385 5.1e-27 124.4 80 70.0
PGSC0003DMG400015737 Solanum tuberosum HOM05D001309 ORTHO05D000385 2.8e-25 118.6 81 65.4
PGSC0003DMG400021956 Solanum tuberosum HOM05D001309 ORTHO05D000385 2.1e-20 102.4 82 62.2
Sopen08g010550 Solanum pennellii HOM05D001309 ORTHO05D000385 9.6e-18 93.6 79 59.5
Hma1.2p1_0174F.1_g076560 Hydrangea macrophylla HOM05D001309 ORTHO05D000385 3.2e-13 78.6 76 47.4
CSS0013398 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.1e-10 70.1 73 42.5
PGSC0003DMG400030020 Solanum tuberosum HOM05D012424 ORTHO05D014551 1.1e-10 70.1 54 59.3
CSS0015098 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.9e-10 69.3 78 38.5
Rhsim06G0190000 Rhododendron simsii HOM05D001309 ORTHO05D000385 2.5e-10 68.9 78 39.7
Rhsim11G0067500 Rhododendron simsii HOM05D010774 ORTHO05D013539 4.3e-10 68.2 90 38.9
Rhsim01G0104600 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.6e-10 67.8 80 38.8
Rhsim10G0033700 Rhododendron simsii HOM05D001309 ORTHO05D000385 1.3e-09 66.6 78 39.7
Rhsim09G0075900 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.1e-08 63.5 78 38.5
Gohir.D01G174600 Gossypium hirsutum HOM05D001309 ORTHO05D000385 1.8e-08 62.8 78 39.7
Gorai.002G216700 Gossypium raimondii HOM05D001309 ORTHO05D000385 2.4e-08 62.4 78 39.7
Gohir.A01G183600 Gossypium hirsutum HOM05D001309 ORTHO05D005970 3.1e-08 62.0 78 39.7
MBI08_g05402_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.0e-08 61.6 77 37.7
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 6.9e-08 60.8 77 36.4
Rhsim13G0228900 Rhododendron simsii HOM05D001309 ORTHO05D000385 6.9e-08 60.8 75 36.0
Dinv04171 Davidia involucrata HOM05D010146 ORTHO05D000385 1.2e-07 60.1 78 38.5
Dinv09828 Davidia involucrata HOM05D001309 ORTHO05D000385 1.2e-07 60.1 78 38.5
Dinv12592 Davidia involucrata HOM05D010146 ORTHO05D000385 1.2e-07 60.1 78 37.2
Dinv15672 Davidia involucrata HOM05D010146 ORTHO05D000385 1.2e-07 60.1 78 37.2
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.5e-07 59.7 77 36.4
RcHm_v2.0_Chr1g0322131 Rosa chinensis HOM05D005012 ORTHO05D005886 2.0e-07 59.3 75 34.7
Dinv19999 Davidia involucrata HOM05D010146 ORTHO05D000385 2.6e-07 58.9 78 35.9
MBI17_g42351_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.6e-07 58.9 77 33.8
MBI11_g30647_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.4e-07 58.5 77 37.7
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 3.4e-07 58.5 81 37.0
CSS0018351 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 9.9e-07 57.0 77 33.8
Gohir.D12G043100 Gossypium hirsutum HOM05D001309 ORTHO05D000385 9.9e-07 57.0 78 37.2
Gorai.008G045300 Gossypium raimondii HOM05D001309 ORTHO05D005970 9.9e-07 57.0 78 37.2
Cc00_g05340 Coffea canephora HOM05D005012 ORTHO05D005886 1.3e-06 56.6 78 38.5
MBI03_g15598_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.3e-06 56.6 77 32.5
Prupe.1G266100 Prunus persica HOM05D005012 ORTHO05D000385 1.3e-06 56.6 74 36.5
Prupe.2G006600 Prunus persica HOM05D005012 ORTHO05D000385 1.3e-06 56.6 74 36.5
MBI13_g26301_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.7e-06 56.2 77 33.8
MBI15_g36793_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.7e-06 56.2 77 33.8
COL.COLO4_17726 Corchorus olitorius HOM05D001309 ORTHO05D005970 2.2e-06 55.8 78 34.6
Gohir.A12G044100 Gossypium hirsutum HOM05D001309 ORTHO05D005970 2.2e-06 55.8 78 37.2
TAR362G0068 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.2e-06 55.8 73 34.2
MBI09_g33431_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.9e-06 54.7 77 32.5
MBI11_g19485_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.9e-06 54.7 77 32.5
vmacro00652 Vaccinium macrocarpon HOM05D001309 ORTHO05D000385 4.9e-06 54.7 75 36.0
HanXRQChr03g0064951 Helianthus annuus HOM05D005763 ORTHO05D005970 6.4e-06 54.3 75 36.0
Lsat_1_v5_gn_9_120520 Lactuca sativa HOM05D001309 ORTHO05D005970 6.4e-06 54.3 74 40.5
MBI18_g39412_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 6.4e-06 54.3 77 32.5
Rhsim11G0013700 Rhododendron simsii HOM05D001309 ORTHO05D000385 6.4e-06 54.3 68 38.2
TAR078G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 6.4e-06 54.3 76 35.5
Actinidia00177 Actinidia chinensis HOM05D001309 ORTHO05D000385 8.4e-06 53.9 77 33.8
CSS0013518 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 8.4e-06 53.9 80 31.2
ECA247G3253 Erigeron canadensis HOM05D005763 ORTHO05D005970 8.4e-06 53.9 74 37.8
MBI15_g13426_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 8.4e-06 53.9 59 39.0
MBI16_g34941_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 8.4e-06 53.9 78 34.6
Nn1g01837 Nelumbo nucifera HOM05D006525 ORTHO05D007845 8.4e-06 53.9 77 35.1
TAR365G0008 Trochodendron aralioides HOM05D001163 ORTHO05D001769 8.4e-06 53.9 76 34.2
TAR365G0123 Trochodendron aralioides HOM05D001309 ORTHO05D000385 8.4e-06 53.9 76 34.2
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 8.4e-06 53.9 76 34.2
TAR622G0651 Trochodendron aralioides HOM05D000141 ORTHO05D000385 8.4e-06 53.9 76 34.2
TAR629G3448 Trochodendron aralioides HOM05D001163 ORTHO05D001769 8.4e-06 53.9 76 34.2
TAR633G0853 Trochodendron aralioides HOM05D001163 ORTHO05D001769 8.4e-06 53.9 76 34.2


User provided reference genes

Program Settings