Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 7.2e-113 410.6 210 100.0
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 1.2e-51 207.2 379 42.0
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 1.7e-50 203.4 328 44.2
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 1.4e-47 193.7 379 40.1
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 5.3e-47 191.8 379 39.6
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 2.9e-45 186.0 379 38.5
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 4.9e-45 185.3 381 38.3
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 2.8e-40 169.5 94 92.6
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 2.5e-36 156.4 379 33.5
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 8.7e-34 147.9 362 32.9
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 2.1e-32 143.3 378 31.0
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 2.8e-32 142.9 213 41.3
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 2.8e-32 142.9 376 33.5
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 2.8e-32 142.9 377 32.1
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 4.8e-32 142.1 377 31.3
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 6.2e-32 141.7 375 31.2
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 8.2e-32 141.4 360 31.7
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 8.2e-32 141.4 147 54.4
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 1.1e-31 141.0 377 31.6
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 1.1e-31 141.0 153 51.0
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 1.4e-31 140.6 376 32.4
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 1.4e-31 140.6 381 31.5
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 2.4e-31 139.8 111 67.6
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 2.4e-31 139.8 380 31.3
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 4.1e-31 139.0 147 53.7
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 5.3e-31 138.7 113 61.9
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 5.3e-31 138.7 234 41.5
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 5.3e-31 138.7 109 66.1
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 5.3e-31 138.7 375 32.0
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 6.9e-31 138.3 109 65.1
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 9.0e-31 137.9 234 41.5
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 1.2e-30 137.5 143 51.7
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 1.5e-30 137.1 377 31.0
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 1.5e-30 137.1 146 53.4
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 2.0e-30 136.7 109 63.3
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 2.0e-30 136.7 108 64.8
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 3.4e-30 136.0 108 65.7
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 3.4e-30 136.0 153 51.6
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 4.5e-30 135.6 146 53.4
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 7.6e-30 134.8 375 32.8
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 1.0e-29 134.4 111 64.0
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 1.3e-29 134.0 135 53.3
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 1.3e-29 134.0 107 65.4
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 1.3e-29 134.0 376 30.3
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 1.7e-29 133.7 107 64.5
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.7e-29 133.7 107 64.5
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.7e-29 133.7 107 64.5
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.7e-29 133.7 107 64.5
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 1.7e-29 133.7 146 50.0
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 2.2e-29 133.3 378 30.7
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 2.9e-29 132.9 147 52.4
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 6.5e-29 131.7 147 51.7
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 6.5e-29 131.7 107 64.5
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 8.4e-29 131.3 350 32.0
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 1.1e-28 131.0 146 53.4
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 1.9e-28 130.2 147 49.7
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 1.9e-28 130.2 154 44.2
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 1.9e-28 130.2 154 46.1
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 2.5e-28 129.8 147 49.7
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 3.2e-28 129.4 110 56.4
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 3.2e-28 129.4 110 56.4
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 3.2e-28 129.4 110 56.4
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 4.2e-28 129.0 135 54.1
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 4.2e-28 129.0 207 42.5
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 4.2e-28 129.0 110 56.4
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 5.5e-28 128.6 127 53.5
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 5.5e-28 128.6 110 56.4
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 7.1e-28 128.3 110 57.3
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 7.1e-28 128.3 154 44.2
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 7.1e-28 128.3 111 62.2
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 7.1e-28 128.3 146 51.4
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 9.3e-28 127.9 154 44.8
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 2.1e-27 126.7 109 59.6
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 2.7e-27 126.3 154 44.2
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 3.5e-27 125.9 154 44.8
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 3.5e-27 125.9 137 51.1
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 4.6e-27 125.6 363 31.7
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 6.1e-27 125.2 110 55.5
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 6.1e-27 125.2 375 30.1
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 1.0e-26 124.4 377 28.6
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 1.3e-26 124.0 381 27.8
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 1.3e-26 124.0 141 47.5
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 1.8e-26 123.6 110 55.5
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 1.8e-26 123.6 111 59.5
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 2.3e-26 123.2 352 30.7
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 3.0e-26 122.9 134 49.3
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 5.1e-26 122.1 211 38.9
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 6.7e-26 121.7 380 29.2
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 1.9e-25 120.2 375 29.3
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 3.3e-25 119.4 105 61.0
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 1.3e-24 117.5 107 55.1
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 2.2e-24 116.7 375 29.1
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 3.7e-24 115.9 170 41.8
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 6.3e-24 115.2 105 59.0
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 5.3e-23 112.1 133 48.1
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 1.2e-22 110.9 108 54.6
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 2.0e-22 110.2 111 53.2
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 2.0e-22 110.2 134 47.0
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 1.7e-21 107.1 134 46.3
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 1.7e-21 107.1 106 56.6
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 6.5e-21 105.1 139 46.0
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 6.5e-21 105.1 139 46.0
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 3.2e-20 102.8 151 43.0
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 5.5e-20 102.1 92 53.3
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 1.2e-19 100.9 143 42.0
CAN.G1940.2 Capsicum annuum HOM05D005972 ORTHO05D007548 3.0e-18 96.3 173 39.3
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 2.0e-17 93.6 165 36.4
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 1.7e-16 90.5 47 97.9
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 1.7e-16 90.5 135 40.0
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 4.8e-16 89.0 374 26.7
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 1.5e-14 84.0 45 95.6
CAN.G2846.2 Capsicum annuum HOM05D005972 ORTHO05D007548 7.7e-14 81.6 51 84.3
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 9.4e-12 74.7 72 54.2
CAN.G730.13 Capsicum annuum HOM05D005972 ORTHO05D007548 7.9e-11 71.6 37 94.6
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 1.8e-10 70.5 64 53.1
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 2.3e-10 70.1 145 33.1
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 3.0e-10 69.7 101 42.6
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 1.5e-09 67.4 52 69.2
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 5.7e-09 65.5 62 56.5
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 4.8e-08 62.4 45 66.7
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 3.1e-07 59.7 45 64.4
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 5.3e-07 58.9 71 50.7
CAN.G222.44 Capsicum annuum HOM05D000005 ORTHO05D000012 2.6e-06 56.6 27 92.6
CAN.G1512.3 Capsicum annuum HOM05D000002 ORTHO05D000001 3.5e-06 56.2 27 92.6


User provided reference genes

Program Settings