Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 2.0e-56 222.2 117 100.0
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 4.5e-56 221.1 117 98.3
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 4.5e-56 221.1 117 98.3
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 4.5e-56 221.1 117 98.3
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 5.0e-55 217.6 117 96.6
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 4.2e-54 214.5 117 94.9
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 5.5e-54 214.2 117 94.0
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 1.2e-53 213.0 117 93.2
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 2.1e-53 212.2 118 94.1
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 2.7e-53 211.8 117 92.3
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 3.6e-53 211.5 117 93.2
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 6.1e-53 210.7 117 92.3
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 1.0e-52 209.9 117 91.5
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 1.0e-52 209.9 117 92.3
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.8e-52 209.1 117 91.5
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.8e-52 209.1 117 91.5
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 2.3e-52 208.8 117 91.5
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 3.0e-52 208.4 117 91.5
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 3.0e-52 208.4 117 91.5
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 5.2e-52 207.6 118 92.4
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 6.7e-52 207.2 117 89.7
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 8.8e-52 206.8 117 92.3
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 1.5e-51 206.1 112 93.8
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 2.0e-51 205.7 117 90.6
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 2.0e-51 205.7 117 89.7
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 3.3e-51 204.9 117 90.6
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 3.3e-51 204.9 118 90.7
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 4.4e-51 204.5 117 88.9
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 5.7e-51 204.1 118 89.8
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 5.7e-51 204.1 117 93.2
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 5.7e-51 204.1 114 90.4
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 7.5e-51 203.8 118 90.7
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 7.5e-51 203.8 113 92.9
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 7.5e-51 203.8 117 86.3
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 7.5e-51 203.8 117 90.6
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 7.5e-51 203.8 117 91.5
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 9.7e-51 203.4 113 90.3
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 1.7e-50 202.6 116 89.7
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 1.7e-50 202.6 113 90.3
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 1.7e-50 202.6 114 89.5
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 2.2e-50 202.2 117 92.3
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 2.8e-50 201.8 117 91.5
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 2.8e-50 201.8 117 90.6
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 2.8e-50 201.8 118 90.7
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 2.8e-50 201.8 116 89.7
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 2.8e-50 201.8 113 92.0
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 3.7e-50 201.4 117 88.0
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 3.7e-50 201.4 114 91.2
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 3.7e-50 201.4 113 91.2
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 4.8e-50 201.1 118 89.8
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 4.8e-50 201.1 118 89.8
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 4.8e-50 201.1 118 89.8
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 4.8e-50 201.1 114 90.4
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 4.8e-50 201.1 114 90.4
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 4.8e-50 201.1 116 90.5
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 4.8e-50 201.1 113 90.3
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 1.1e-49 199.9 116 88.8
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.1e-49 199.9 117 88.9
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 1.1e-49 199.9 119 88.2
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 1.1e-49 199.9 117 91.5
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 1.4e-49 199.5 119 89.1
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 1.4e-49 199.5 113 89.4
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 1.4e-49 199.5 118 87.3
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.8e-49 199.1 113 92.0
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 1.8e-49 199.1 113 91.2
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 1.8e-49 199.1 117 90.6
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 1.8e-49 199.1 114 91.2
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.8e-49 199.1 113 91.2
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 2.4e-49 198.7 113 92.0
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 3.1e-49 198.4 116 88.8
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 3.1e-49 198.4 116 88.8
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 4.1e-49 198.0 117 88.0
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 4.1e-49 198.0 117 88.0
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 4.1e-49 198.0 113 92.0
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 5.3e-49 197.6 113 91.2
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 5.3e-49 197.6 113 91.2
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 5.3e-49 197.6 113 91.2
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 9.1e-49 196.8 116 87.9
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 9.1e-49 196.8 117 89.7
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 90.3
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 89.4
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 89.4
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 1.6e-48 196.1 111 91.0
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 1.6e-48 196.1 114 90.4
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 1.6e-48 196.1 116 88.8
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.6e-48 196.1 113 87.6
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 2.0e-48 195.7 113 90.3
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 2.0e-48 195.7 113 90.3
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 2.0e-48 195.7 113 89.4
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 2.7e-48 195.3 113 89.4
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 2.7e-48 195.3 113 89.4
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 3.5e-48 194.9 117 86.3
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 4.5e-48 194.5 113 88.5
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 4.5e-48 194.5 113 89.4
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 4.5e-48 194.5 113 88.5
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 4.5e-48 194.5 113 89.4
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 4.5e-48 194.5 114 88.6
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 4.5e-48 194.5 116 87.1
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 4.5e-48 194.5 112 89.3
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 4.5e-48 194.5 113 89.4
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 5.9e-48 194.1 113 87.6
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 5.9e-48 194.1 117 87.2
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 7.7e-48 193.7 113 88.5
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 1.0e-47 193.4 116 86.2
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 1.0e-47 193.4 113 88.5
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 2.2e-47 192.2 110 89.1
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 2.2e-47 192.2 117 86.3
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 2.2e-47 192.2 117 86.3
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 3.8e-47 191.4 117 82.9
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 5.0e-47 191.0 114 86.0
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 5.0e-47 191.0 113 87.6
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 5.0e-47 191.0 112 88.4
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 1.1e-46 189.9 116 84.5
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 4.2e-46 188.0 110 89.1
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 4.2e-46 188.0 117 85.5
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 4.2e-46 188.0 114 83.3
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 7.2e-46 187.2 109 89.0
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 7.2e-46 187.2 113 84.1
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 9.4e-46 186.8 153 71.2
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 1.6e-45 186.0 117 82.1
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 3.6e-45 184.9 110 85.5
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 8.0e-45 183.7 113 84.1
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 1.0e-44 183.3 113 84.1
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 1.8e-44 182.6 113 83.2
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 1.8e-44 182.6 123 80.5
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 4.0e-44 181.4 113 83.2
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 8.8e-44 180.3 109 81.7
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 2.6e-43 178.7 117 76.1
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 4.8e-42 174.5 114 73.7
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 7.0e-41 170.6 178 59.6
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 1.5e-38 162.9 107 74.8
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.5e-38 162.9 122 77.9
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 3.3e-38 161.8 89 88.8
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 3.6e-37 158.3 88 89.8
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 4.7e-37 157.9 197 50.8
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 1.5e-35 152.9 85 92.9
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 1.2e-32 143.3 85 87.1
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 1.6e-32 142.9 103 75.7
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 2.0e-32 142.5 81 87.7
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 2.0e-32 142.5 86 83.7
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 3.5e-32 141.7 72 94.4
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 5.9e-32 141.0 82 90.2
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 7.8e-32 140.6 86 83.7
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 1.3e-31 139.8 85 84.7
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 3.3e-30 135.2 82 85.4
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 1.2e-29 133.3 106 71.7
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 1.2e-29 133.3 106 71.7
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 3.6e-29 131.7 67 95.5
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 4.4e-27 124.8 74 90.5
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 9.8e-27 123.6 109 59.6
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 6.4e-26 120.9 97 56.7
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 6.4e-26 120.9 70 88.6
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 8.3e-26 120.6 80 82.5
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 6.0e-24 114.4 73 82.2
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 8.6e-23 110.5 83 71.1
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 3.1e-20 102.1 74 70.3
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 2.0e-19 99.4 105 62.9
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 1.7e-15 86.3 51 82.4
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 1.9e-09 66.2 48 72.9
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 2.7e-08 62.4 47 72.3
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 6.0e-08 61.2 40 80.0
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 6.0e-08 61.2 40 80.0
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 1.0e-07 60.5 61 59.0
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 2.3e-07 59.3 44 72.7
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 1.9e-06 56.2 44 68.2


User provided reference genes

Program Settings