Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 2.3e-204 715.3 357 100.0
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 1.1e-172 610.1 361 86.4
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 1.4e-172 609.8 363 86.8
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 1.8e-172 609.4 363 86.5
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.1e-164 583.6 359 83.0
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.2e-160 570.1 360 81.7
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 1.3e-149 533.5 364 78.0
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 3.5e-91 339.3 379 51.2
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 3.8e-90 335.9 378 51.9
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 8.5e-90 334.7 357 55.2
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 1.1e-89 334.3 370 52.7
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 4.2e-89 332.4 372 52.4
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 1.6e-88 330.5 370 52.4
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 3.6e-88 329.3 367 53.7
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 6.8e-87 325.1 358 50.8
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 1.2e-86 324.3 380 52.4
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 1.5e-86 323.9 369 50.1
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 9.8e-86 321.2 377 50.7
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.3e-85 320.9 385 50.4
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 1.7e-85 320.5 365 52.1
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.8e-85 319.7 363 53.4
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.8e-85 319.7 363 53.4
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 2.8e-85 319.7 383 50.1
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 3.7e-85 319.3 383 49.9
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 6.3e-85 318.5 383 49.9
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 1.0e-82 311.2 389 48.8
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.3e-82 310.8 378 49.7
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 1.7e-82 310.5 357 50.1
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 1.7e-82 310.5 367 49.6
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 1.5e-81 307.4 379 48.5
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 1.9e-81 307.0 380 48.4
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 7.3e-81 305.1 356 53.4
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 2.1e-80 303.5 346 51.2
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 2.8e-80 303.1 390 46.9
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 3.6e-80 302.8 376 47.9
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 4.7e-80 302.4 381 48.0
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 8.0e-80 301.6 371 47.7
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 2.3e-79 300.1 360 48.9
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 4.0e-79 299.3 363 49.0
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 4.0e-79 299.3 372 48.7
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 6.8e-79 298.5 373 50.4
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 1.2e-78 297.7 332 52.7
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 4.4e-78 295.8 366 48.4
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 9.8e-78 294.7 366 48.9
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 2.4e-76 290.0 357 50.1
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.2e-75 287.7 357 47.6
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 5.9e-75 285.4 366 46.7
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 2.3e-74 283.5 379 47.0
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 3.0e-74 283.1 371 46.4
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 6.6e-74 282.0 374 44.7
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.9e-73 280.4 373 46.6
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 9.5e-73 278.1 346 48.0
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 6.2e-72 275.4 372 45.4
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 6.2e-72 275.4 369 43.9
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.0e-71 274.6 350 48.0
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.1e-71 273.1 367 46.3
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 2.0e-70 270.4 361 46.3
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 8.3e-69 265.0 354 47.7
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 1.2e-67 261.2 355 44.8
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 3.5e-67 259.6 361 46.0
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 6.0e-67 258.8 377 44.8
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 1.7e-66 257.3 355 46.2
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 3.0e-66 256.5 361 46.0
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 5.0e-66 255.8 355 43.9
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 1.5e-65 254.2 439 40.3
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 7.3e-65 251.9 392 42.1
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 9.5e-65 251.5 393 43.3
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 1.6e-64 250.8 365 43.8
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.6e-64 250.8 382 41.6
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 2.1e-64 250.4 350 45.4
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 2.8e-64 250.0 355 43.1
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 8.1e-64 248.4 356 45.2
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 1.1e-63 248.1 350 44.9
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 2.3e-63 246.9 366 44.0
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 8.9e-63 245.0 349 45.6
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 1.5e-62 244.2 382 41.6
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 2.6e-62 243.4 352 43.8
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 3.4e-62 243.0 352 44.9
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 3.4e-62 243.0 366 43.2
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 9.9e-62 241.5 352 44.9
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 1.3e-61 241.1 352 43.5
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 3.7e-61 239.6 338 44.7
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 8.3e-61 238.4 354 43.5
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.1e-60 238.0 364 42.6
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.9e-60 237.3 367 42.2
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 4.1e-60 236.1 350 42.9
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 1.6e-59 234.2 439 38.7
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 3.5e-59 233.0 356 43.5
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 6.0e-59 232.3 353 44.2
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 7.8e-59 231.9 349 44.1
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 8.6e-58 228.4 362 42.3
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 1.9e-57 227.3 363 43.0
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 1.1e-55 221.5 371 39.9
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 8.9e-55 218.4 384 40.9
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 1.2e-54 218.0 427 39.3
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 1.2e-54 218.0 185 57.8
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 7.6e-54 215.3 332 42.8
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 1.4e-52 211.1 203 53.7
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 1.9e-52 210.7 357 40.3
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 1.9e-52 210.7 329 42.2
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 2.4e-52 210.3 356 41.0
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 3.2e-52 209.9 349 41.0
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 3.9e-50 203.0 237 51.5
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 3.9e-50 203.0 236 51.3
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 6.6e-50 202.2 362 38.4
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 8.1e-48 195.3 339 42.5
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 1.1e-47 194.9 362 38.1
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 3.4e-46 189.9 210 52.4
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 1.9e-44 184.1 375 38.4
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 3.2e-44 183.3 194 53.1
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 7.1e-44 182.2 367 40.1
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 1.0e-42 178.3 189 50.8
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 2.3e-42 177.2 274 43.1
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 8.7e-42 175.3 192 51.6
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 1.1e-39 168.3 350 37.4
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 3.1e-39 166.8 345 38.3
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 4.0e-39 166.4 352 34.1
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 6.9e-39 165.6 193 50.3
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 9.0e-39 165.2 350 36.0
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 1.2e-38 164.9 356 36.2
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 6.0e-35 152.5 132 55.3
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 8.7e-34 148.7 191 48.7
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 1.5e-33 147.9 351 33.3
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 1.1e-31 141.7 278 40.3
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 7.1e-28 129.0 107 63.6
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 2.4e-23 114.0 212 40.1
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 1.9e-20 104.4 138 48.6
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 3.2e-20 103.6 165 38.2
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 1.6e-19 101.3 165 37.0
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 1.5e-17 94.7 349 32.4
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 1.9e-17 94.4 87 58.6
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 8.5e-13 79.0 157 33.1
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.1e-12 78.6 179 30.7
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 6.1e-11 72.8 133 34.6
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 6.1e-11 72.8 157 33.1
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.3e-10 70.9 161 31.1
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 3.0e-10 70.5 339 25.4
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 1.9e-09 67.8 91 42.9
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 9.7e-09 65.5 150 30.7
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 9.7e-09 65.5 150 30.7
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 9.7e-09 65.5 150 30.7
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 9.7e-09 65.5 150 30.7
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 9.7e-09 65.5 150 30.7
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 2.2e-08 64.3 150 29.3
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 4.8e-08 63.2 150 30.0
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 5.3e-07 59.7 60 55.0
Actinidia08859 Actinidia chinensis HOM05D001735 ORTHO05D001640 1.5e-06 58.2 136 29.4
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 2.6e-06 57.4 332 23.5


User provided reference genes

Program Settings