Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G724.32 Capsicum annuum HOM05D006323 ORTHO05D007827 7.1e-267 923.3 452 100.0
PGSC0003DMG400010620 Solanum tuberosum HOM05D006323 ORTHO05D007827 1.5e-224 782.7 451 84.0
Sopen04g031380 Solanum pennellii HOM05D006323 ORTHO05D007827 9.7e-224 780.0 451 83.8
Nitab4.5_0000497g0170 Nicotiana tabacum HOM05D006323 ORTHO05D007827 1.2e-208 729.9 456 78.7
Nitab4.5_0003725g0070 Nicotiana tabacum HOM05D006323 ORTHO05D007827 1.7e-204 716.1 458 77.3
Dinv44950 Davidia involucrata HOM05D006323 ORTHO05D007827 6.2e-162 574.7 461 61.0
Hma1.2p1_0819F.1_g223630 Hydrangea macrophylla HOM05D006323 ORTHO05D007827 2.7e-157 559.3 467 59.7
Actinidia38108 Actinidia chinensis HOM05D006323 ORTHO05D007827 1.8e-156 556.6 452 61.1
Oeu016579.1 Olea europaea HOM05D006323 ORTHO05D007827 4.8e-154 548.5 450 58.7
CiPaw.07G174200 Carya illinoinensis HOM05D006323 ORTHO05D007827 4.5e-152 542.0 458 57.0
CSS0045238 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 7.6e-152 541.2 461 57.7
CAN.G724.31 Capsicum annuum HOM05D006323 ORTHO05D007827 7.6e-152 541.2 444 62.2
ClCG08G016540 Citrullus lanatus HOM05D006323 ORTHO05D007827 3.8e-151 538.9 467 57.0
Haze_22429 Corylus avellana HOM05D006323 ORTHO05D007827 3.5e-149 532.3 470 56.8
MELO3C010800.2 Cucumis melo HOM05D006323 ORTHO05D007827 6.0e-149 531.6 455 57.4
CSS0024022 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 1.3e-148 530.4 461 57.0
CSS0010458 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 1.8e-148 530.0 466 57.5
Migut.N02786 Erythranthe guttata HOM05D006323 ORTHO05D007827 5.1e-148 528.5 443 58.9
CSS0050369 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 9.6e-147 524.2 464 57.5
PSO541G5960 Papaver somniferum HOM05D006323 ORTHO05D007827 1.4e-145 520.4 462 55.0
TAR381G1608 Trochodendron aralioides HOM05D006323 ORTHO05D007827 2.4e-145 519.6 462 56.7
CsaV3_2G026070 Cucumis sativus L. HOM05D006323 ORTHO05D007827 6.9e-145 518.1 455 56.0
PSO675G0675 Papaver somniferum HOM05D006323 ORTHO05D007827 1.5e-144 516.9 462 55.0
TAR381G0342 Trochodendron aralioides HOM05D006323 ORTHO05D007827 3.4e-144 515.8 462 56.3
Nn5g30609 Nelumbo nucifera HOM05D006323 ORTHO05D007827 4.5e-144 515.4 454 55.5
QL12p038177 Quercus lobata HOM05D006323 ORTHO05D007827 4.5e-144 515.4 456 56.4
HanXRQChr10g0298611 Helianthus annuus HOM05D006323 ORTHO05D007827 1.7e-143 513.5 444 59.0
vmacro22049 Vaccinium macrocarpon HOM05D006323 ORTHO05D007827 2.9e-143 512.7 466 58.2
Cfa013771 Carpinus fangiana HOM05D006323 ORTHO05D007827 3.8e-143 512.3 470 55.1
Sed0007452 Sechium edule HOM05D006323 ORTHO05D007827 4.9e-143 511.9 464 54.5
SalBow2G0555 Salvia bowleyana HOM05D006323 ORTHO05D007827 2.5e-142 509.6 455 57.8
Prupe.1G422100 Prunus persica HOM05D006323 ORTHO05D007827 5.5e-142 508.4 459 54.7
Aqoxy6G02596 Aquilegia oxysepala HOM05D006323 ORTHO05D007827 2.3e-140 503.1 460 54.8
EL10Ac1g02373 Beta vulgaris HOM05D006323 ORTHO05D007827 1.9e-139 500.0 450 55.1
CANSAT25G0442 Cannabis sativa HOM05D006323 ORTHO05D007827 3.1e-137 492.7 460 54.1
Eucgr.F00088 Eucalyptus grandis HOM05D006323 ORTHO05D007827 4.5e-136 488.8 448 56.0
Manes.18G047100 Manihot esculenta HOM05D006323 ORTHO05D007827 4.5e-136 488.8 446 54.7
Rhsim07G0219300 Rhododendron simsii HOM05D006323 ORTHO05D007827 8.5e-135 484.6 460 55.9
arahy.Tifrunner.gnm1.ann1.JK4I75 Arachis hypogaea HOM05D006323 ORTHO05D007827 3.2e-134 482.6 475 52.4
SGA_v2.0_scaffold28G11834 Striga asiatica HOM05D006323 ORTHO05D007827 4.2e-134 482.3 453 56.5
Cpa.g.sc142.34 Carica papaya HOM05D006323 ORTHO05D007827 2.7e-133 479.6 452 53.3
Lalb_Chr14g0368151 Lupinus albus HOM05D006323 ORTHO05D007827 1.4e-132 477.2 473 52.0
Hund05295 Selenicereus undatus HOM05D006323 ORTHO05D007827 2.3e-132 476.5 456 53.5
Cpa.g.sc142.31 Carica papaya HOM05D006323 ORTHO05D007827 6.7e-132 474.9 452 52.9
Lsat_1_v5_gn_1_1301 Lactuca sativa HOM05D006323 ORTHO05D007827 4.3e-131 472.2 448 54.2
Lj5g0017088 Lotus japonicus HOM05D006323 ORTHO05D007827 2.2e-130 469.9 455 52.3
PGR083G0013 Punica granatum HOM05D006323 ORTHO05D007827 3.1e-129 466.1 451 52.8
TPR.G13155 Trifolium pratense HOM05D006323 ORTHO05D007827 5.3e-129 465.3 463 51.6
FvH4_2g32960 Fragaria vesca HOM05D006323 ORTHO05D007827 6.9e-129 464.9 442 52.3
FAN20G1244 Fragaria x ananassa HOM05D006323 ORTHO05D007827 1.5e-128 463.8 442 52.7
Psat6g018000 Pisum sativum HOM05D006323 ORTHO05D007827 1.5e-128 463.8 471 51.4
Medtr1g017940 Medicago truncatula HOM05D006323 ORTHO05D007827 2.0e-128 463.4 473 52.0
FAN24G0652 Fragaria x ananassa HOM05D006323 ORTHO05D007827 3.4e-128 462.6 442 52.0
RcHm_v2.0_Chr6g0309741 Rosa chinensis HOM05D006323 ORTHO05D007827 3.4e-128 462.6 448 51.8
Ca_13213_v3 Cicer arietinum L. HOM05D006323 ORTHO05D007827 5.9e-128 461.8 472 51.3
TWI56G0563 Tripterygium wilfordii HOM05D006323 ORTHO05D007827 2.2e-127 459.9 457 51.2
FAN27G3326 Fragaria x ananassa HOM05D006323 ORTHO05D007827 3.8e-127 459.1 442 51.8
FAN15G2783 Fragaria x ananassa HOM05D006323 ORTHO05D007827 6.5e-127 458.4 442 52.0
Potri.002G117900 Populus trichocarpa HOM05D006323 ORTHO05D007827 2.5e-126 456.4 442 53.2
Ciclev10001174m.g Citrus clementina HOM05D006323 ORTHO05D007827 3.6e-125 452.6 446 52.0
Phvul.001G028300 Phaseolus vulgaris HOM05D006323 ORTHO05D007827 4.7e-125 452.2 450 51.3
Sabra02G0092600 Salix brachista HOM05D006323 ORTHO05D007827 1.1e-123 447.6 442 52.7
Duzib093G0619 Durio zibethinus HOM05D006323 ORTHO05D007827 3.7e-122 442.6 442 51.1
Thecc.08G088000 Theobroma cacao HOM05D006323 ORTHO05D007827 3.7e-122 442.6 448 50.4
Gohir.A05G210400 Gossypium hirsutum HOM05D006323 ORTHO05D007827 6.3e-122 441.8 445 51.5
Glyma.17G234600 Glycine max HOM05D006323 ORTHO05D007827 8.2e-122 441.4 459 50.8
Gorai.009G220400 Gossypium raimondii HOM05D006323 ORTHO05D007827 9.1e-121 438.0 445 50.3
Atru.chr13.839 Acer truncatum HOM05D006323 ORTHO05D007827 3.4e-120 436.0 445 51.0
GSVIVG01009337001 Vitis vinifera HOM05D006323 ORTHO05D007827 4.5e-120 435.6 465 49.2
Gohir.D05G213700 Gossypium hirsutum HOM05D006323 ORTHO05D007827 1.7e-119 433.7 446 50.2
Glyma.14G089027 Glycine max HOM05D006323 ORTHO05D007827 1.9e-118 430.3 455 49.9
AUR62022472 Chenopodium quinoa HOM05D006323 ORTHO05D007827 3.3e-115 419.5 465 47.1
arahy.Tifrunner.gnm1.ann1.694GR7 Arachis hypogaea HOM05D006323 ORTHO05D007827 8.2e-114 414.8 429 51.0
THA.LOC104825780 Tarenaya hassleriana HOM05D006323 ORTHO05D007827 4.1e-113 412.5 441 48.8
CDE04G3275 Ceratophyllum demersum HOM05D006323 ORTHO05D007827 1.0e-111 407.9 452 47.8
VMungo0647G1220 Vigna mungo HOM05D006323 ORTHO05D007827 5.5e-110 402.1 445 47.2
HPP92_013407 Vanilla planifolia HOM05D006323 ORTHO05D007827 4.7e-109 399.1 438 46.8
TAR625G0711 Trochodendron aralioides HOM05D006323 ORTHO05D007827 6.1e-109 398.7 430 48.4
Carub.0003s1171 Capsella rubella HOM05D006323 ORTHO05D007827 2.3e-108 396.7 436 48.9
Ah.05g167080 Amaranthus hybridus HOM05D006323 ORTHO05D007827 4.0e-108 396.0 447 47.4
Sp6g10510 Schrenkiella parvula HOM05D006323 ORTHO05D007827 1.3e-106 391.0 439 46.7
Sc26g0004210 Simmondsia chinensis HOM05D006323 ORTHO05D007827 3.7e-106 389.4 403 48.9
ATR0739G201 Amborella trichopoda HOM05D006323 ORTHO05D007827 1.4e-105 387.5 486 45.9
Thhalv10028685m.g Eutrema salsugineum HOM05D006323 ORTHO05D007827 1.8e-105 387.1 432 46.5
CARHR287100 Cardamine hirsuta HOM05D006323 ORTHO05D007827 2.7e-104 383.3 446 46.2
C03p33680 Brassica napus HOM05D006323 ORTHO05D007827 2.2e-103 380.2 447 47.0
BolC3t15688H Brassica oleracea HOM05D006323 ORTHO05D007827 2.2e-103 380.2 447 47.0
AT3G12350 Arabidopsis thaliana HOM05D006323 ORTHO05D007827 2.9e-103 379.8 436 47.9
AL3G24000 Arabidopsis lyrata HOM05D006323 ORTHO05D007827 5.0e-103 379.0 436 47.5
Lj4A71T64 Lonicera japonica HOM05D006323 ORTHO05D007827 1.8e-100 370.5 320 59.7
BcaC01g04786 Brassica carinata HOM05D006323 ORTHO05D007827 5.7e-99 365.5 445 46.1
AUR62037416 Chenopodium quinoa HOM05D006323 ORTHO05D007827 2.2e-98 363.6 441 43.5
BraA03t12002Z Brassica rapa HOM05D006323 ORTHO05D007827 1.4e-97 360.9 442 45.2
Aa31LG5G21510 Aethionema arabicum HOM05D006323 ORTHO05D007827 1.8e-97 360.5 435 45.5
A03p27900 Brassica napus HOM05D006323 ORTHO05D007827 1.8e-97 360.5 442 45.7
BcaB01g02882 Brassica carinata HOM05D006323 ORTHO05D007827 2.0e-96 357.1 448 44.6
QL05p065459 Quercus lobata HOM05D006323 ORTHO05D007827 2.2e-90 337.0 299 57.5
BcaC01g04794 Brassica carinata HOM05D006323 ORTHO05D007827 3.1e-89 333.2 441 44.0
Cc10_g05020 Coffea canephora HOM05D006323 ORTHO05D007827 2.7e-88 330.1 275 61.8
HPP92_013383 Vanilla planifolia HOM05D006323 ORTHO05D007827 1.6e-85 320.9 349 47.0
ECA247G3150 Erigeron canadensis HOM05D006323 ORTHO05D007827 5.8e-75 285.8 315 50.8
Mapoly0007s0129 Marchantia polymorpha HOM05D006323 ORTHO05D007827 1.4e-68 264.6 481 35.8
TAR628G0857 Trochodendron aralioides HOM05D006323 ORTHO05D007827 8.9e-68 261.9 269 48.7
SEGI_30290 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 1.2e-61 241.5 334 42.5
COL.COLO4_28496 Corchorus olitorius HOM05D006323 ORTHO05D007827 8.4e-58 228.8 239 50.2
Pp3c15_12240 Physcomitrium patens HOM05D006323 ORTHO05D007827 7.1e-57 225.7 509 31.6
unitig_8.g4874 Utricularia gibba HOM05D006323 ORTHO05D007827 1.2e-51 208.4 224 50.9
AagrBONN_evm.TU.Sc2ySwM_362.2944 Anthoceros agrestis HOM05D006323 ORTHO05D007827 1.6e-45 188.0 460 28.5
Os12g0511000 Oryza sativa ssp. japonica HOM05D006323 ORTHO05D007827 2.1e-45 187.6 376 34.3
Eucgr.L02719 Eucalyptus grandis HOM05D006323 ORTHO05D007827 8.7e-39 165.6 150 54.7
CBR_g25752 Chara braunii HOM05D006323 ORTHO05D007827 4.0e-36 156.8 543 26.2
HPP92_013381 Vanilla planifolia HOM05D006323 ORTHO05D007827 4.6e-32 143.3 185 43.8
TAR623G1714 Trochodendron aralioides HOM05D006323 ORTHO05D007827 2.9e-26 124.0 99 57.6
FvH4_3g44630 Fragaria vesca HOM05D006323 ORTHO05D007827 1.1e-25 122.1 94 59.6
MD08G1081200 Malus domestica HOM05D006323 ORTHO05D007827 1.6e-24 118.2 121 46.3
COL.COLO4_28497 Corchorus olitorius HOM05D006323 ORTHO05D007827 6.1e-24 116.3 129 41.1
unitig_8.g4875 Utricularia gibba HOM05D006323 ORTHO05D007827 2.3e-23 114.4 106 50.0
Eucgr.C01112 Eucalyptus grandis HOM05D006323 ORTHO05D007827 4.8e-21 106.7 91 54.9
Lj5P501T7 Lonicera japonica HOM05D006323 ORTHO05D007827 2.9e-18 97.4 86 58.1
SEGI_04434 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 3.8e-18 97.1 165 33.3
TAR623G1335 Trochodendron aralioides HOM05D006323 ORTHO05D007827 6.5e-18 96.3 65 61.5
Lj1P1160T24 Lonicera japonica HOM05D006323 ORTHO05D007827 5.5e-17 93.2 89 55.1
Oeu037483.1 Olea europaea HOM05D006323 ORTHO05D007827 1.1e-14 85.5 128 48.4
QL04p027551 Quercus lobata HOM05D006323 ORTHO05D007827 3.7e-13 80.5 90 43.3
Zm00001eb264620 Zea mays HOM05D006323 ORTHO05D007827 8.2e-13 79.3 222 32.9
DCAR_019993 Daucus carota HOM05D003519 ORTHO05D004443 6.7e-07 59.7 123 28.5


User provided reference genes

Program Settings