Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G723.31 Capsicum annuum HOM05D005492 ORTHO05D006911 7.4e-103 377.1 175 100.0
Solyc04g076890.4 Solanum lycopersicum HOM05D005492 ORTHO05D006911 8.1e-102 373.6 175 98.3
Sopen04g030660 Solanum pennellii HOM05D005492 ORTHO05D006911 8.1e-102 373.6 175 98.3
PGSC0003DMG400006380 Solanum tuberosum HOM05D005492 ORTHO05D006911 8.1e-102 373.6 175 98.3
Nitab4.5_0000377g0170 Nicotiana tabacum HOM05D005492 ORTHO05D006911 1.2e-100 369.8 175 96.6
Nitab4.5_0005557g0040 Nicotiana tabacum HOM05D005492 ORTHO05D006911 1.2e-100 369.8 175 96.6
Dinv44895 Davidia involucrata HOM05D005492 ORTHO05D006911 8.4e-99 363.6 175 93.7
Gohir.A05G264075 Gossypium hirsutum HOM05D005492 ORTHO05D006911 8.4e-99 363.6 175 94.3
Gohir.D05G266500 Gossypium hirsutum HOM05D005492 ORTHO05D006911 8.4e-99 363.6 175 94.3
Gorai.009G278400 Gossypium raimondii HOM05D005492 ORTHO05D006911 8.4e-99 363.6 175 94.3
CSS0048416 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 4.2e-98 361.3 175 92.6
COL.COLO4_35339 Corchorus olitorius HOM05D005492 ORTHO05D006911 4.2e-98 361.3 175 93.1
CANSAT35G2015 Cannabis sativa HOM05D005492 ORTHO05D006911 5.5e-98 360.9 175 92.6
TWI12G1341 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 5.5e-98 360.9 175 93.1
Gohir.D06G028400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 7.1e-98 360.5 175 93.1
CiPaw.15G151700 Carya illinoinensis HOM05D005492 ORTHO05D006911 9.3e-98 360.1 175 92.6
MD08G1209200 Malus domestica HOM05D005492 ORTHO05D006911 9.3e-98 360.1 175 92.0
Thecc.08G078100 Theobroma cacao HOM05D005492 ORTHO05D006911 9.3e-98 360.1 175 92.6
Cfa020694 Carpinus fangiana HOM05D005492 ORTHO05D006911 1.2e-97 359.8 175 92.6
Haze_18999 Corylus avellana HOM05D005492 ORTHO05D006911 1.2e-97 359.8 175 92.6
CsaV3_3G048290 Cucumis sativus L. HOM05D005492 ORTHO05D006911 1.2e-97 359.8 175 92.0
Glyma.06G091400 Glycine max HOM05D005492 ORTHO05D006911 1.2e-97 359.8 172 94.2
Gohir.A06G029400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.6e-97 359.4 175 92.6
Prupe.1G541400 Prunus persica HOM05D005492 ORTHO05D006911 1.6e-97 359.4 175 92.6
RcHm_v2.0_Chr7g0232851 Rosa chinensis HOM05D005492 ORTHO05D006911 2.1e-97 359.0 175 92.0
Ciclev10002666m.g Citrus clementina HOM05D005492 ORTHO05D006911 2.7e-97 358.6 175 92.6
HanXRQChr01g0001771 Helianthus annuus HOM05D005492 ORTHO05D006911 2.7e-97 358.6 175 93.1
Dinv22020 Davidia involucrata HOM05D005492 ORTHO05D006911 3.5e-97 358.2 175 92.6
Gorai.010G031300 Gossypium raimondii HOM05D005492 ORTHO05D006911 3.5e-97 358.2 175 92.6
Lj1g0026792 Lotus japonicus HOM05D005492 ORTHO05D006911 3.5e-97 358.2 175 92.0
MD15G1393200 Malus domestica HOM05D005492 ORTHO05D006911 3.5e-97 358.2 175 92.0
Sabra02G0084500 Salix brachista HOM05D005492 ORTHO05D006911 3.5e-97 358.2 175 92.6
Duzib041G0144 Durio zibethinus HOM05D005492 ORTHO05D006911 4.6e-97 357.8 175 92.6
PGR083G0175 Punica granatum HOM05D005492 ORTHO05D006911 4.6e-97 357.8 175 90.3
arahy.Tifrunner.gnm1.ann1.7IN1UY Arachis hypogaea HOM05D005492 ORTHO05D006911 6.0e-97 357.5 175 92.0
arahy.Tifrunner.gnm1.ann1.EMS59G Arachis hypogaea HOM05D005492 ORTHO05D006911 6.0e-97 357.5 175 92.0
MSTRG.24417 Avicennia marina HOM05D005492 ORTHO05D006911 6.0e-97 357.5 174 91.4
vmacro04619 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 6.0e-97 357.5 174 91.4
VMungo1309G2191 Vigna mungo HOM05D005492 ORTHO05D006911 6.0e-97 357.5 175 92.0
Carub.0001s2610 Capsella rubella HOM05D005492 ORTHO05D006911 7.9e-97 357.1 175 90.9
Oeu002945.1 Olea europaea HOM05D005492 ORTHO05D006911 7.9e-97 357.1 175 90.9
Potri.002G107600 Populus trichocarpa HOM05D005492 ORTHO05D006911 7.9e-97 357.1 175 92.0
CARHR027130 Cardamine hirsuta HOM05D005492 ORTHO05D006911 1.0e-96 356.7 175 90.9
AL1G40960 Arabidopsis lyrata HOM05D005492 ORTHO05D006911 1.3e-96 356.3 175 90.9
AT1G27530 Arabidopsis thaliana HOM05D005492 ORTHO05D006911 1.3e-96 356.3 175 90.9
Oeu026363.1 Olea europaea HOM05D005492 ORTHO05D006911 1.3e-96 356.3 175 90.9
Cpa.g.sc160.3 Carica papaya HOM05D005492 ORTHO05D006911 1.8e-96 355.9 175 91.4
Duzib041G0066 Durio zibethinus HOM05D005492 ORTHO05D006911 1.8e-96 355.9 175 92.0
Hma1.2p1_1548F.1_g290020 Hydrangea macrophylla HOM05D005492 ORTHO05D006911 1.8e-96 355.9 173 91.3
Lj4A81T75 Lonicera japonica HOM05D005492 ORTHO05D006911 1.8e-96 355.9 173 92.5
FAN08G0693 Fragaria x ananassa HOM05D005492 ORTHO05D006911 2.3e-96 355.5 175 90.9
FAN18G0360 Fragaria x ananassa HOM05D005492 ORTHO05D006911 2.3e-96 355.5 175 90.9
Lsat_1_v5_gn_9_81101 Lactuca sativa HOM05D005492 ORTHO05D006911 3.0e-96 355.1 174 92.0
FAN04G2818 Fragaria x ananassa HOM05D005492 ORTHO05D006911 3.9e-96 354.8 175 90.3
Glyma.04G089600 Glycine max HOM05D005492 ORTHO05D006911 3.9e-96 354.8 172 93.0
Medtr3g111110 Medicago truncatula HOM05D005492 ORTHO05D006911 3.9e-96 354.8 175 90.9
TAR628G0115 Trochodendron aralioides HOM05D005492 ORTHO05D006911 3.9e-96 354.8 175 90.3
Duzib116G0911 Durio zibethinus HOM05D005492 ORTHO05D006911 5.1e-96 354.4 177 91.0
Manes.18G054601 Manihot esculenta HOM05D005492 ORTHO05D006911 5.1e-96 354.4 175 90.3
QL12p040192 Quercus lobata HOM05D005492 ORTHO05D006911 5.1e-96 354.4 174 90.2
Psat5g017920 Pisum sativum HOM05D005492 ORTHO05D006911 6.7e-96 354.0 175 90.9
SGA_v2.0_scaffold28G11869 Striga asiatica HOM05D005492 ORTHO05D006911 6.7e-96 354.0 174 90.2
TWI32G1091 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 6.7e-96 354.0 175 90.3
GSVIVG01009242001 Vitis vinifera HOM05D005492 ORTHO05D006911 6.7e-96 354.0 175 92.0
Actinidia19266 Actinidia chinensis HOM05D005492 ORTHO05D006911 8.7e-96 353.6 175 90.3
Aqoxy5G01947 Aquilegia oxysepala HOM05D005492 ORTHO05D006911 8.7e-96 353.6 175 91.4
Lalb_Chr08g0242711 Lupinus albus HOM05D005492 ORTHO05D006911 8.7e-96 353.6 175 90.9
vmacro21373 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 8.7e-96 353.6 175 90.9
Migut.N02829 Erythranthe guttata HOM05D005492 ORTHO05D006911 1.1e-95 353.2 174 89.7
Migut.O00437 Erythranthe guttata HOM05D005492 ORTHO05D006911 1.1e-95 353.2 174 89.7
Ah.00g000130 Amaranthus hybridus HOM05D005492 ORTHO05D006911 1.5e-95 352.8 175 91.4
CDE04G0412 Ceratophyllum demersum HOM05D005492 ORTHO05D006911 1.5e-95 352.8 175 89.1
Ca_15548_v3 Cicer arietinum L. HOM05D005492 ORTHO05D006911 1.5e-95 352.8 175 90.3
Actinidia10257 Actinidia chinensis HOM05D005492 ORTHO05D006911 1.9e-95 352.4 175 90.3
Eucgr.F00462 Eucalyptus grandis HOM05D005492 ORTHO05D006911 1.9e-95 352.4 175 90.3
PSO210G2227 Papaver somniferum HOM05D005492 ORTHO05D006911 1.9e-95 352.4 175 90.9
PSO761G0095 Papaver somniferum HOM05D005492 ORTHO05D006911 1.9e-95 352.4 175 90.9
Sp1g23790 Schrenkiella parvula HOM05D005492 ORTHO05D006911 1.9e-95 352.4 175 89.7
C07p17680 Brassica napus HOM05D005492 ORTHO05D006911 2.5e-95 352.1 175 90.3
ECA232G4293 Erigeron canadensis HOM05D005492 ORTHO05D006911 2.5e-95 352.1 175 90.9
THA.LOC104800327 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 2.5e-95 352.1 175 90.3
Thhalv10008910m.g Eutrema salsugineum HOM05D005492 ORTHO05D006911 3.3e-95 351.7 175 89.7
BolC3t19680H Brassica oleracea HOM05D005492 ORTHO05D006911 4.3e-95 351.3 175 89.7
Sed0023469 Sechium edule HOM05D005492 ORTHO05D006911 4.3e-95 351.3 175 90.9
A07p11710 Brassica napus HOM05D005492 ORTHO05D006911 5.7e-95 350.9 175 89.7
A08p26210 Brassica napus HOM05D005492 ORTHO05D006911 5.7e-95 350.9 175 89.7
BolC7t42275H Brassica oleracea HOM05D005492 ORTHO05D006911 5.7e-95 350.9 175 89.7
BraA07t28956Z Brassica rapa HOM05D005492 ORTHO05D006911 5.7e-95 350.9 175 89.7
BraA08t34572Z Brassica rapa HOM05D005492 ORTHO05D006911 5.7e-95 350.9 175 89.7
unitig_8.g4867 Utricularia gibba HOM05D002193 ORTHO05D002631 5.7e-95 350.9 171 89.5
BcaC01g06944 Brassica carinata HOM05D005492 ORTHO05D006911 7.4e-95 350.5 175 89.1
Cc10_g08150 Coffea canephora HOM05D005492 ORTHO05D006911 7.4e-95 350.5 173 91.9
TPR.G12370 Trifolium pratense HOM05D005492 ORTHO05D006911 7.4e-95 350.5 175 89.7
C03p74220 Brassica napus HOM05D005492 ORTHO05D006911 9.6e-95 350.1 175 89.1
BcaC01g01601 Brassica carinata HOM05D005492 ORTHO05D006911 1.6e-94 349.4 175 89.1
MBI16_g26726_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 1.6e-94 349.4 175 88.6
BcaC05g26754 Brassica carinata HOM05D005492 ORTHO05D006911 2.8e-94 348.6 175 89.1
AUR62035408 Chenopodium quinoa HOM05D005492 ORTHO05D006911 3.7e-94 348.2 172 91.9
AUR62035696 Chenopodium quinoa HOM05D005492 ORTHO05D006911 3.7e-94 348.2 172 91.9
BcaC06g35300 Brassica carinata HOM05D005492 ORTHO05D006911 4.8e-94 347.8 175 89.1
Rhsim07G0214900 Rhododendron simsii HOM05D005492 ORTHO05D006911 4.8e-94 347.8 175 89.1
Sc02g0008380 Simmondsia chinensis HOM05D005492 ORTHO05D006911 8.2e-94 347.1 175 89.7
BcaB03g13980 Brassica carinata HOM05D005492 ORTHO05D006911 1.1e-93 346.7 175 88.6
Atru.BG.248.p Acer truncatum HOM05D005492 ORTHO05D006911 5.3e-93 344.4 174 89.7
Aa31LG7G10120 Aethionema arabicum HOM05D005492 ORTHO05D006911 6.9e-93 344.0 174 88.5
MSTRG.22188 Avicennia marina HOM05D005492 ORTHO05D006911 1.2e-92 343.2 173 90.2
TAR381G0934 Trochodendron aralioides HOM05D005492 ORTHO05D006911 4.5e-92 341.3 175 89.1
HPP92_010753 Vanilla planifolia HOM05D005492 ORTHO05D006911 2.3e-88 328.9 175 84.0
SEGI_29138 Sequoiadendron giganteum HOM05D005492 ORTHO05D006911 6.7e-88 327.4 175 82.9
Hund05232 Selenicereus undatus HOM05D005492 ORTHO05D006911 8.7e-88 327.0 244 66.8
Os10g0205200 Oryza sativa ssp. japonica HOM05D005492 ORTHO05D006911 4.8e-86 321.2 174 80.5
Zm00001eb010950 Zea mays HOM05D005492 ORTHO05D006911 8.2e-86 320.5 174 79.9
ATR0767G107 Amborella trichopoda HOM05D005492 ORTHO05D006911 1.7e-83 312.8 173 80.9
Peaxi162Scf00626g00718 Petunia axillaris HOM05D005492 ORTHO05D006911 2.2e-83 312.4 181 83.4
Mapoly0013s0107 Marchantia polymorpha HOM05D005492 ORTHO05D006911 1.6e-81 306.2 168 79.2
ClCG11G014860 Citrullus lanatus HOM05D005492 ORTHO05D006911 3.6e-81 305.1 150 90.0
CBR_g37394 Chara braunii HOM05D005492 ORTHO05D006911 1.1e-79 300.1 173 76.9
Pp3c16_2350 Physcomitrium patens HOM05D005492 ORTHO05D006911 5.7e-79 297.7 175 74.9
PRCOL_00001807 Prasinoderma coloniale HOM05D005492 ORTHO05D006911 3.2e-74 282.0 165 72.7
Cfa015905 Carpinus fangiana HOM05D005492 ORTHO05D000088 6.7e-72 274.2 167 78.4
DCAR_009548 Daucus carota HOM05D005492 ORTHO05D006911 1.5e-71 273.1 132 91.7
Phvul.009G146200 Phaseolus vulgaris HOM05D005492 ORTHO05D006911 2.0e-71 272.7 131 92.4
TAR381G1662 Trochodendron aralioides HOM05D005492 ORTHO05D006911 9.7e-71 270.4 131 90.8
Cre02.g142350 Chlamydomonas reinhardtii HOM05D005492 ORTHO05D006911 2.2e-67 259.2 164 68.9
Atru.chr13.934 Acer truncatum HOM05D005492 ORTHO05D006911 7.4e-63 244.2 125 88.0
MELO3C003490.2 Cucumis melo HOM05D005492 ORTHO05D006911 7.7e-60 234.2 124 85.5
FvH4_5g33720 Fragaria vesca HOM05D005492 ORTHO05D006911 6.1e-57 224.6 112 88.4
Duzib093G0511 Durio zibethinus HOM05D005492 ORTHO05D006911 4.0e-56 221.9 119 82.4
THA.LOC104807850 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 6.3e-54 214.5 125 76.8
MBI16_g14677_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 1.8e-53 213.0 114 85.1
Haze_27628 Corylus avellana HOM05D005492 ORTHO05D006911 9.1e-53 210.7 171 55.0
AagrBONN_evm.TU.Sc2ySwM_369.477 Anthoceros agrestis HOM05D005492 ORTHO05D006911 1.7e-51 206.5 112 78.6
Prupe.7G085600 Prunus persica HOM05D005492 ORTHO05D006911 6.1e-49 198.0 104 85.6
Nn2g14030 Nelumbo nucifera HOM05D005492 ORTHO05D006911 4.1e-45 185.3 141 64.5
CSS0004398 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 9.1e-45 184.1 91 91.2
Dinv07042 Davidia involucrata HOM05D005492 ORTHO05D185078 1.2e-36 157.1 177 52.0
MD08G1145300 Malus domestica HOM05D005492 ORTHO05D006911 5.9e-36 154.8 88 78.4
MD16G1251000 Malus domestica HOM05D005492 ORTHO05D245813 9.8e-31 137.5 109 62.4
Nn5g29750 Nelumbo nucifera HOM05D005492 ORTHO05D006911 3.2e-29 132.5 66 89.4
MD05G1007500 Malus domestica HOM05D005492 ORTHO05D006911 4.1e-29 132.1 114 57.9
MD00G1203800 Malus domestica HOM05D005492 ORTHO05D247194 8.3e-22 107.8 92 55.4


User provided reference genes

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