Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G716.5 Capsicum annuum HOM05D001836 ORTHO05D001519 1.0e-199 699.9 352 100.0
CAN.G771.55 Capsicum annuum HOM05D001836 ORTHO05D001519 1.9e-41 174.1 97 88.7
PGSC0003DMG400020155 Solanum tuberosum HOM05D001836 ORTHO05D001519 1.6e-32 144.4 98 76.5
Solyc06g083600.3 Solanum lycopersicum HOM05D001836 ORTHO05D001519 2.8e-32 143.7 98 76.5
Sopen06g034990 Solanum pennellii HOM05D001836 ORTHO05D001519 2.8e-32 143.7 98 76.5
Solyc06g083590.4 Solanum lycopersicum HOM05D001836 ORTHO05D001519 9.2e-28 128.6 106 67.9
Sopen06g034980 Solanum pennellii HOM05D001836 ORTHO05D001519 4.6e-27 126.3 106 67.0
PGSC0003DMG400020088 Solanum tuberosum HOM05D001836 ORTHO05D001519 5.9e-27 125.9 106 67.0
Peaxi162Scf00052g00147 Petunia axillaris HOM05D001836 ORTHO05D001519 2.1e-24 117.5 106 64.2
CAN.G771.56 Capsicum annuum HOM05D001836 ORTHO05D001519 5.2e-23 112.8 110 61.8
Nitab4.5_0001657g0040 Nicotiana tabacum HOM05D001836 ORTHO05D001519 6.8e-23 112.5 107 64.5
Nitab4.5_0002085g0110 Nicotiana tabacum HOM05D001836 ORTHO05D001519 1.2e-22 111.7 101 63.4
Nitab4.5_0006465g0030 Nicotiana tabacum HOM05D001836 ORTHO05D001519 2.6e-22 110.5 103 61.2
Nitab4.5_0000813g0020 Nicotiana tabacum HOM05D001836 ORTHO05D001519 3.2e-20 103.6 107 59.8
Thecc.01G230500 Theobroma cacao HOM05D001836 ORTHO05D001519 1.0e-18 98.6 102 55.9
Manes.12G043500 Manihot esculenta HOM05D001836 ORTHO05D001519 1.7e-18 97.8 100 53.0
Ciclev10019039m.g Citrus clementina HOM05D001836 ORTHO05D001519 2.3e-18 97.4 95 57.9
HanXRQChr15g0468411 Helianthus annuus HOM05D001836 ORTHO05D001519 2.3e-18 97.4 102 54.9
Lsat_1_v5_gn_9_12961 Lactuca sativa HOM05D001836 ORTHO05D001519 3.0e-18 97.1 102 53.9
Gohir.A07G154900 Gossypium hirsutum HOM05D001836 ORTHO05D001519 8.6e-18 95.5 104 54.8
Duzib138G0071 Durio zibethinus HOM05D001836 ORTHO05D001519 1.9e-17 94.4 102 54.9
ECA247G2651 Erigeron canadensis HOM05D001836 ORTHO05D001519 2.5e-17 94.0 102 53.9
PGR083G0419 Punica granatum HOM05D001836 ORTHO05D001519 2.5e-17 94.0 108 50.0
Gohir.D07G161100 Gossypium hirsutum HOM05D001836 ORTHO05D001519 4.3e-17 93.2 104 53.8
Lj1g0008452 Lotus japonicus HOM05D001836 ORTHO05D001519 4.3e-17 93.2 104 51.9
EL10Ac7g17813 Beta vulgaris HOM05D001836 ORTHO05D001519 5.6e-17 92.8 102 52.0
Gorai.001G184300 Gossypium raimondii HOM05D001836 ORTHO05D001519 5.6e-17 92.8 102 52.9
Manes.13G043500 Manihot esculenta HOM05D001836 ORTHO05D001519 9.5e-17 92.0 101 55.4
Cpa.g.sc8.187 Carica papaya HOM05D001836 ORTHO05D001519 1.2e-16 91.7 104 51.0
AUR62008894 Chenopodium quinoa HOM05D001836 ORTHO05D001519 1.2e-16 91.7 103 51.5
Duzib133G0078 Durio zibethinus HOM05D001836 ORTHO05D001519 2.8e-16 90.5 102 52.9
PSO170G2943 Papaver somniferum HOM05D001836 ORTHO05D001519 3.6e-16 90.1 111 51.4
Rhsim01G0258000 Rhododendron simsii HOM05D001836 ORTHO05D001519 4.7e-16 89.7 110 50.0
Atru.chr5.1940 Acer truncatum HOM05D001836 ORTHO05D001519 1.8e-15 87.8 93 55.9
AUR62031814 Chenopodium quinoa HOM05D001836 ORTHO05D001519 1.8e-15 87.8 103 49.5
Oeu015454.1 Olea europaea HOM05D001836 ORTHO05D001519 1.8e-15 87.8 111 50.5
Oeu015455.1 Olea europaea HOM05D001836 ORTHO05D001519 1.8e-15 87.8 111 50.5
Sc17g0002510 Simmondsia chinensis HOM05D001836 ORTHO05D001519 1.8e-15 87.8 102 51.0
Cc01_g17380 Coffea canephora HOM05D001836 ORTHO05D001519 2.3e-15 87.4 99 53.5
Glyma.08G357600 Glycine max HOM05D001836 ORTHO05D001519 2.3e-15 87.4 106 49.1
Potri.002G252000 Populus trichocarpa HOM05D001836 ORTHO05D001519 2.3e-15 87.4 96 47.9
ClCG09G009230 Citrullus lanatus HOM05D001836 ORTHO05D001519 4.0e-15 86.7 105 50.5
TWI14G0074 Tripterygium wilfordii HOM05D001836 ORTHO05D001519 4.0e-15 86.7 96 54.2
CiPaw.03G152600 Carya illinoinensis HOM05D001836 ORTHO05D001519 5.2e-15 86.3 101 50.5
MELO3C021001.2 Cucumis melo HOM05D001836 ORTHO05D001519 5.2e-15 86.3 105 49.5
TAR633G1393 Trochodendron aralioides HOM05D001836 ORTHO05D001519 5.2e-15 86.3 102 51.0
Cfa002536 Carpinus fangiana HOM05D001836 ORTHO05D001519 6.8e-15 85.9 104 51.0
CsaV3_7G025720 Cucumis sativus L. HOM05D001836 ORTHO05D001519 6.8e-15 85.9 105 49.5
Medtr7g059330 Medicago truncatula HOM05D001836 ORTHO05D001519 6.8e-15 85.9 104 48.1
Haze_24765 Corylus avellana HOM05D001836 ORTHO05D001519 8.9e-15 85.5 97 51.5
Lj2A1135T40 Lonicera japonica HOM05D001836 ORTHO05D001519 8.9e-15 85.5 107 49.5
Psat3g142040 Pisum sativum HOM05D001836 ORTHO05D001519 8.9e-15 85.5 104 51.0
Sed0007968 Sechium edule HOM05D001836 ORTHO05D001519 8.9e-15 85.5 105 46.7
Migut.D00511 Erythranthe guttata HOM05D001836 ORTHO05D001519 1.2e-14 85.1 70 65.7
Glyma.18G176100 Glycine max HOM05D001836 ORTHO05D001519 2.6e-14 84.0 100 47.0
Phvul.008G122100 Phaseolus vulgaris HOM05D001836 ORTHO05D001519 2.6e-14 84.0 103 47.6
MSTRG.21438 Avicennia marina HOM05D001836 ORTHO05D001519 3.4e-14 83.6 99 53.5
unitig_0.g174 Utricularia gibba HOM05D001836 ORTHO05D001519 4.4e-14 83.2 94 54.3
arahy.Tifrunner.gnm1.ann1.PN7UB6 Arachis hypogaea HOM05D001836 ORTHO05D001519 7.5e-14 82.4 98 49.0
arahy.Tifrunner.gnm1.ann1.Z6Z4XE Arachis hypogaea HOM05D001836 ORTHO05D001519 7.5e-14 82.4 98 49.0
BcaC01g03263 Brassica carinata HOM05D001836 ORTHO05D001519 7.5e-14 82.4 99 48.5
C03p54220 Brassica napus HOM05D001836 ORTHO05D001519 7.5e-14 82.4 99 48.5
BolC3t17707H Brassica oleracea HOM05D001836 ORTHO05D001519 7.5e-14 82.4 99 48.5
Dinv19231 Davidia involucrata HOM05D001836 ORTHO05D001519 7.5e-14 82.4 96 51.0
Sp3g22420 Schrenkiella parvula HOM05D001836 ORTHO05D001519 1.7e-13 81.3 106 44.3
Ah.08g214190 Amaranthus hybridus HOM05D000222 ORTHO05D004962 2.2e-13 80.9 105 48.6
Sabra02G0191400 Salix brachista HOM05D001836 ORTHO05D001519 2.2e-13 80.9 96 46.9
GSVIVG01028540001 Vitis vinifera HOM05D001836 ORTHO05D001519 2.2e-13 80.9 92 51.1
Actinidia09501 Actinidia chinensis HOM05D001836 ORTHO05D001519 2.9e-13 80.5 107 50.5
Carub.0003s2505 Capsella rubella HOM05D001836 ORTHO05D001519 3.7e-13 80.1 105 44.8
Lalb_Chr01g0022481 Lupinus albus HOM05D001836 ORTHO05D001519 3.7e-13 80.1 110 50.0
PSO764G0056 Papaver somniferum HOM05D001836 ORTHO05D001519 3.7e-13 80.1 109 49.5
SalBow4G0480 Salvia bowleyana HOM05D001836 ORTHO05D001519 3.7e-13 80.1 109 47.7
VMungo1383G1808 Vigna mungo HOM05D001836 ORTHO05D001519 3.7e-13 80.1 108 46.3
AT3G24650 Arabidopsis thaliana HOM05D001836 ORTHO05D001519 4.9e-13 79.7 98 49.0
Thhalv10003110m.g Eutrema salsugineum HOM05D001836 ORTHO05D001519 4.9e-13 79.7 99 48.5
SalBow4G1730 Salvia bowleyana HOM05D001836 ORTHO05D001519 4.9e-13 79.7 107 48.6
Prupe.8G207700 Prunus persica HOM05D001836 ORTHO05D001519 6.4e-13 79.3 114 44.7
TAR362G0407 Trochodendron aralioides HOM05D001836 ORTHO05D001519 6.4e-13 79.3 76 59.2
Aa31LG8G11820 Aethionema arabicum HOM05D001836 ORTHO05D001519 8.3e-13 79.0 101 46.5
CARHR100970 Cardamine hirsuta HOM05D001836 ORTHO05D001519 8.3e-13 79.0 105 45.7
MBI11_g04277_MAGBIO Magnolia biondii HOM05D001836 ORTHO05D001519 8.3e-13 79.0 62 66.1
AL3G40270 Arabidopsis lyrata HOM05D001836 ORTHO05D001519 1.1e-12 78.6 97 47.4
A03p43840 Brassica napus HOM05D001836 ORTHO05D001519 1.1e-12 78.6 100 48.0
BraA03t13518Z Brassica rapa HOM05D001836 ORTHO05D001519 1.1e-12 78.6 100 48.0
Aqoxy5G00059 Aquilegia oxysepala HOM05D001836 ORTHO05D001519 1.4e-12 78.2 111 49.5
BcaB03g14571 Brassica carinata HOM05D001836 ORTHO05D001519 1.4e-12 78.2 99 46.5
HanXRQChr10g0280021 Helianthus annuus HOM05D001836 ORTHO05D001519 1.4e-12 78.2 106 48.1
CiPaw.04G107600 Carya illinoinensis HOM05D001836 ORTHO05D001519 2.4e-12 77.4 104 47.1
MD10G1169900 Malus domestica HOM05D001836 ORTHO05D001519 2.4e-12 77.4 117 42.7
RcHm_v2.0_Chr6g0285371 Rosa chinensis HOM05D001836 ORTHO05D001519 4.1e-12 76.6 110 45.5
Sed0013379 Sechium edule HOM05D001836 ORTHO05D001519 5.4e-12 76.3 107 48.6
ATR0824G204 Amborella trichopoda HOM05D001836 ORTHO05D001519 7.1e-12 75.9 63 61.9
FAN27G2966 Fragaria x ananassa HOM05D001836 ORTHO05D001519 7.1e-12 75.9 110 45.5
Lalb_Chr03g0041991 Lupinus albus HOM05D001836 ORTHO05D001519 9.2e-12 75.5 107 46.7
MD05G1181100 Malus domestica HOM05D001836 ORTHO05D001519 9.2e-12 75.5 117 42.7
unitig_60.g25727 Utricularia gibba HOM05D001836 ORTHO05D001519 9.2e-12 75.5 59 71.2
FAN15G2279 Fragaria x ananassa HOM05D001836 ORTHO05D001519 1.2e-11 75.1 112 44.6
SGA_v2.0_scaffold1G00705 Striga asiatica HOM05D001836 ORTHO05D001519 1.2e-11 75.1 52 73.1
Oeu052113.2 Olea europaea HOM05D001836 ORTHO05D001519 1.6e-11 74.7 52 75.0
FvH4_2g19630 Fragaria vesca HOM05D001836 ORTHO05D001519 2.7e-11 73.9 112 44.6
FAN24G0767 Fragaria x ananassa HOM05D001836 ORTHO05D001519 2.7e-11 73.9 112 44.6
QL09p044350 Quercus lobata HOM05D001836 ORTHO05D001519 2.7e-11 73.9 99 47.5
DCAR_004706 Daucus carota HOM05D001836 ORTHO05D001519 3.5e-11 73.6 105 48.6
SEGI_29455 Sequoiadendron giganteum HOM05D001836 ORTHO05D001519 1.3e-10 71.6 63 63.5
Zm00001eb143690 Zea mays HOM05D001836 ORTHO05D001519 1.3e-10 71.6 86 52.3
CANSAT01G2411 Cannabis sativa HOM05D001836 ORTHO05D001519 1.7e-10 71.2 95 45.3
Actinidia23745 Actinidia chinensis HOM05D001836 ORTHO05D001519 8.6e-10 68.9 109 45.9
CSS0042217 Camellia sinensis var. sinensis HOM05D001836 ORTHO05D001519 1.1e-09 68.6 92 46.7
Os01g0911700 Oryza sativa ssp. japonica HOM05D001836 ORTHO05D001519 1.1e-09 68.6 62 62.9
TPR.G23267 Trifolium pratense HOM05D001836 ORTHO05D001519 2.5e-09 67.4 65 61.5
arahy.Tifrunner.gnm1.ann1.4K8YXT Arachis hypogaea HOM05D001836 ORTHO05D001519 5.6e-09 66.2 63 60.3
arahy.Tifrunner.gnm1.ann1.6PZ1IJ Arachis hypogaea HOM05D001836 ORTHO05D001519 5.6e-09 66.2 63 60.3
COL.COLO4_36332 Corchorus olitorius HOM05D001836 ORTHO05D001519 9.5e-09 65.5 88 46.6
DCAR_000539 Daucus carota HOM05D001836 ORTHO05D001519 1.6e-08 64.7 58 60.3
Nn1g03112 Nelumbo nucifera HOM05D001836 ORTHO05D001519 8.1e-08 62.4 83 47.0
Ca_22686_v3 Cicer arietinum L. HOM05D001836 ORTHO05D001519 1.5e-06 58.2 105 38.1
PSO541G1212 Papaver somniferum HOM05D001836 ORTHO05D001519 3.4e-06 57.0 68 50.0
PSO675G5179 Papaver somniferum HOM05D001836 ORTHO05D001519 3.4e-06 57.0 65 50.8


User provided reference genes

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