Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G715.5 Capsicum annuum HOM05D005155 ORTHO05D006266 3.5e-123 445.3 281 100.0
CAN.G1447.4 Capsicum annuum HOM05D005155 ORTHO05D006266 8.7e-106 387.5 305 85.6
Sopen05g001730 Solanum pennellii HOM05D005155 ORTHO05D006266 1.4e-98 363.6 298 75.5
PGSC0003DMG400004112 Solanum tuberosum HOM05D005155 ORTHO05D006266 3.0e-98 362.5 306 72.5
Solyc05g005730.4 Solanum lycopersicum HOM05D005155 ORTHO05D006266 6.7e-98 361.3 306 73.9
Nitab4.5_0004941g0060 Nicotiana tabacum HOM05D005155 ORTHO05D006266 1.7e-88 330.1 293 66.2
Nitab4.5_0003086g0050 Nicotiana tabacum HOM05D005155 ORTHO05D006266 3.5e-86 322.4 290 65.9
Peaxi162Scf00359g00214 Petunia axillaris HOM05D005155 ORTHO05D006266 1.2e-75 287.3 292 61.6
Actinidia20603 Actinidia chinensis HOM05D005155 ORTHO05D006266 8.8e-74 281.2 278 60.4
Actinidia20617 Actinidia chinensis HOM05D005155 ORTHO05D006266 1.5e-73 280.4 278 60.4
Rhsim04G0007200 Rhododendron simsii HOM05D005155 ORTHO05D006266 5.7e-73 278.5 283 59.0
CSS0035525 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 7.5e-73 278.1 278 58.3
Actinidia24711 Actinidia chinensis HOM05D005155 ORTHO05D006266 8.6e-69 264.6 274 56.9
Ciclev10015959m.g Citrus clementina HOM05D005155 ORTHO05D006266 1.9e-68 263.5 279 57.0
THA.LOC104802634 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 3.2e-68 262.7 280 55.4
Dinv21322 Davidia involucrata HOM05D005155 ORTHO05D006266 4.2e-68 262.3 278 57.6
THA.LOC104819027 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 4.2e-68 262.3 276 66.7
Oeu022053.1 Olea europaea HOM05D005155 ORTHO05D006266 1.4e-66 257.3 285 58.2
Cpa.g.sc136.55 Carica papaya HOM05D005155 ORTHO05D006266 2.3e-66 256.5 279 55.2
Atru.chr6.3431 Acer truncatum HOM05D005155 ORTHO05D006266 5.2e-66 255.4 275 54.9
MELO3C024180.2 Cucumis melo HOM05D005155 ORTHO05D006266 5.2e-66 255.4 279 54.5
Manes.13G059900 Manihot esculenta HOM05D005155 ORTHO05D006266 8.9e-66 254.6 277 54.5
Hma1.2p1_0629F.1_g192150 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 2.0e-65 253.4 280 55.0
Aa31LG4G7530 Aethionema arabicum HOM05D005155 ORTHO05D006266 5.7e-65 251.9 276 55.1
Thhalv10004636m.g Eutrema salsugineum HOM05D005155 ORTHO05D006266 1.7e-64 250.4 278 53.6
Dinv05324 Davidia involucrata HOM05D005155 ORTHO05D006266 2.8e-64 249.6 278 55.0
Sp2g18610 Schrenkiella parvula HOM05D005155 ORTHO05D006266 3.7e-64 249.2 278 53.2
ClCG02G003040 Citrullus lanatus HOM05D005155 ORTHO05D006266 6.3e-64 248.4 279 53.8
Gorai.007G164700 Gossypium raimondii HOM05D005155 ORTHO05D006266 6.3e-64 248.4 279 52.7
Carub.0008s0781 Capsella rubella HOM05D005155 ORTHO05D006266 1.1e-63 247.7 278 51.8
Gohir.D11G154600 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.1e-63 247.7 279 52.7
CsaV3_7G002370 Cucumis sativus L. HOM05D005155 ORTHO05D006266 1.4e-63 247.3 279 53.8
Potri.014G170500 Populus trichocarpa HOM05D005155 ORTHO05D006266 2.4e-63 246.5 277 54.5
CSS0023894 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 5.4e-63 245.4 278 55.0
AL8G20970 Arabidopsis lyrata HOM05D005155 ORTHO05D006266 7.0e-63 245.0 278 53.2
TPR.G3861 Trifolium pratense HOM05D005155 ORTHO05D006266 1.6e-62 243.8 300 50.0
PGR044G0745 Punica granatum HOM05D005155 ORTHO05D006266 2.0e-62 243.4 286 52.8
Cc02_g33980 Coffea canephora HOM05D005155 ORTHO05D006266 7.8e-62 241.5 255 56.9
GSVIVG01030126001 Vitis vinifera HOM05D005155 ORTHO05D006266 7.8e-62 241.5 253 54.9
CiPaw.04G197900 Carya illinoinensis HOM05D005155 ORTHO05D006266 1.0e-61 241.1 285 51.9
Sed0007088 Sechium edule HOM05D005155 ORTHO05D006266 1.3e-61 240.7 283 52.3
AT5G48240 Arabidopsis thaliana HOM05D005155 ORTHO05D006266 1.7e-61 240.4 280 50.7
Haze_24928 Corylus avellana HOM05D005155 ORTHO05D006266 3.8e-61 239.2 295 51.5
C09p04670 Brassica napus HOM05D005155 ORTHO05D006266 5.0e-61 238.8 279 51.3
DCAR_021083 Daucus carota HOM05D005155 ORTHO05D006266 8.6e-61 238.0 284 59.9
Psat7g043480 Pisum sativum HOM05D005155 ORTHO05D006266 8.6e-61 238.0 292 47.9
Prupe.3G194600 Prunus persica HOM05D005155 ORTHO05D006266 1.1e-60 237.7 284 51.1
Gohir.D07G170200 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.5e-60 237.3 277 50.5
Gorai.001G190100 Gossypium raimondii HOM05D005155 ORTHO05D006266 1.5e-60 237.3 277 50.5
Duzib211G0098 Durio zibethinus HOM05D005155 ORTHO05D006266 1.9e-60 236.9 280 62.9
A09p04360 Brassica napus HOM05D005155 ORTHO05D006266 5.6e-60 235.3 282 51.1
Thecc.01G199500 Theobroma cacao HOM05D005155 ORTHO05D006266 5.6e-60 235.3 281 61.6
TWI75G0909 Tripterygium wilfordii HOM05D005155 ORTHO05D006266 5.6e-60 235.3 280 50.0
Gohir.A07G163100 Gossypium hirsutum HOM05D005155 ORTHO05D006266 7.3e-60 235.0 275 49.8
A06p39310 Brassica napus HOM05D005155 ORTHO05D006266 9.5e-60 234.6 183 67.8
Duzib138G0133 Durio zibethinus HOM05D005155 ORTHO05D006266 9.5e-60 234.6 287 55.4
Eucgr.K01388 Eucalyptus grandis HOM05D005155 ORTHO05D006266 9.5e-60 234.6 278 57.9
Cfa014201 Carpinus fangiana HOM05D005155 ORTHO05D006266 1.2e-59 234.2 285 60.7
Glyma.03G238300 Glycine max HOM05D005155 ORTHO05D006266 3.6e-59 232.6 294 48.6
Lalb_Chr21g0315451 Lupinus albus HOM05D005155 ORTHO05D006266 3.6e-59 232.6 282 54.3
Phvul.006G092400 Phaseolus vulgaris HOM05D005155 ORTHO05D006266 4.7e-59 232.3 294 45.9
Ah.08g219720 Amaranthus hybridus HOM05D005155 ORTHO05D006266 2.3e-58 229.9 276 57.2
Aqoxy3G04181 Aquilegia oxysepala HOM05D005155 ORTHO05D006266 4.0e-58 229.2 288 55.2
C07p38970 Brassica napus HOM05D005155 ORTHO05D006266 4.0e-58 229.2 283 51.2
Glyma.19G235800 Glycine max HOM05D005155 ORTHO05D006266 6.8e-58 228.4 291 48.1
MD09G1131700 Malus domestica HOM05D005155 ORTHO05D006266 6.8e-58 228.4 287 59.2
Ah.08g210400 Amaranthus hybridus HOM05D005155 ORTHO05D006266 8.9e-58 228.0 276 51.8
BolC9t53395H Brassica oleracea HOM05D005155 ORTHO05D006266 8.9e-58 228.0 308 47.4
BcaB04g19566 Brassica carinata HOM05D005155 ORTHO05D006266 3.4e-57 226.1 285 50.2
VMungo0540G1824 Vigna mungo HOM05D005155 ORTHO05D006266 3.4e-57 226.1 291 49.8
CARHR286520 Cardamine hirsuta HOM05D005155 ORTHO05D006266 4.4e-57 225.7 280 52.9
TPR.G35685 Trifolium pratense HOM05D005155 ORTHO05D006266 5.7e-57 225.3 304 53.3
BraA09t36073Z Brassica rapa HOM05D005155 ORTHO05D006266 2.2e-56 223.4 313 46.0
MBI04_g26115_MAGBIO Magnolia biondii HOM05D005155 ORTHO05D006266 2.2e-56 223.4 287 51.9
BcaC04g23785 Brassica carinata HOM05D005155 ORTHO05D006266 2.9e-56 223.0 281 48.4
Lj4g0024217 Lotus japonicus HOM05D005155 ORTHO05D006266 4.9e-56 222.2 281 47.0
CANSAT64G2107 Cannabis sativa HOM05D005155 ORTHO05D006266 8.3e-56 221.5 289 55.7
SGA_v2.0_scaffold181G39700 Striga asiatica HOM05D005155 ORTHO05D006266 1.4e-55 220.7 347 44.4
Ca_02017_v3 Cicer arietinum L. HOM05D005155 ORTHO05D006266 3.2e-55 219.5 288 59.7
BraA06t26845Z Brassica rapa HOM05D005155 ORTHO05D006266 7.0e-55 218.4 221 55.7
Lsat_1_v5_gn_0_13881 Lactuca sativa HOM05D005155 ORTHO05D006266 1.2e-54 217.6 258 60.9
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 1.2e-54 217.6 271 49.1
Sc20g0004590 Simmondsia chinensis HOM05D005155 ORTHO05D006266 2.0e-54 216.9 289 49.1
CARHR218550 Cardamine hirsuta HOM05D005155 ORTHO05D006266 4.6e-54 215.7 182 62.1
AUR62030994 Chenopodium quinoa HOM05D005155 ORTHO05D006266 4.6e-54 215.7 181 64.6
Migut.M00065 Erythranthe guttata HOM05D005155 ORTHO05D006266 4.6e-54 215.7 308 46.1
Haze_12586 Corylus avellana HOM05D005155 ORTHO05D006266 6.0e-54 215.3 186 63.4
HanXRQChr01g0006811 Helianthus annuus HOM05D005155 ORTHO05D006266 6.0e-54 215.3 282 59.2
BcaC06g30816 Brassica carinata HOM05D005155 ORTHO05D006266 1.7e-53 213.8 184 62.0
PSO782G4695 Papaver somniferum HOM05D005155 ORTHO05D006266 5.0e-53 212.2 278 47.5
TAR629G2368 Trochodendron aralioides HOM05D005155 ORTHO05D006266 5.0e-53 212.2 298 45.6
RcHm_v2.0_Chr2g0155591 Rosa chinensis HOM05D005155 ORTHO05D006266 4.3e-52 209.1 283 62.2
PSO210G0096 Papaver somniferum HOM05D005155 ORTHO05D006266 5.6e-52 208.8 283 46.3
FvH4_6g40390 Fragaria vesca HOM05D005155 ORTHO05D006266 2.1e-51 206.8 283 62.2
FAN09G4460 Fragaria x ananassa HOM05D005155 ORTHO05D006266 2.1e-51 206.8 282 57.1
FAN02G4414 Fragaria x ananassa HOM05D005155 ORTHO05D006266 3.6e-51 206.1 283 59.0
FAN05G3842 Fragaria x ananassa HOM05D005155 ORTHO05D006266 4.7e-51 205.7 283 61.8
HPP92_009941 Vanilla planifolia HOM05D005155 ORTHO05D006266 4.7e-51 205.7 277 47.3
CDE09G0959 Ceratophyllum demersum HOM05D005155 ORTHO05D006266 3.1e-50 203.0 283 44.2
ECA248G0062 Erigeron canadensis HOM05D005155 ORTHO05D006266 7.5e-49 198.4 180 62.2
EL10Ac5g10791 Beta vulgaris HOM05D005155 ORTHO05D006266 2.9e-48 196.4 284 46.8
COL.COLO4_19654 Corchorus olitorius HOM05D005155 ORTHO05D006266 6.4e-48 195.3 146 69.9
SalBow7G0407 Salvia bowleyana HOM05D005155 ORTHO05D006266 2.4e-47 193.4 280 52.5
Gohir.A11G147700 Gossypium hirsutum HOM05D005155 ORTHO05D006266 5.4e-47 192.2 254 48.4
arahy.Tifrunner.gnm1.ann1.FV1RU3 Arachis hypogaea HOM05D005155 ORTHO05D006266 3.5e-46 189.5 289 43.9
arahy.Tifrunner.gnm1.ann1.ZBS9GV Arachis hypogaea HOM05D005155 ORTHO05D006266 3.5e-46 189.5 289 43.9
FAN14G3535 Fragaria x ananassa HOM05D005155 ORTHO05D006266 5.0e-45 185.7 306 56.2
MSTRG.6620 Avicennia marina HOM05D005155 ORTHO05D006266 1.1e-42 177.9 222 51.4
MD17G1119200 Malus domestica HOM05D005155 ORTHO05D006266 2.3e-42 176.8 225 56.0
Psat5g216800 Pisum sativum HOM05D005155 ORTHO05D006266 2.3e-42 176.8 236 47.9
BolC7t44418H Brassica oleracea HOM05D005155 ORTHO05D006266 8.9e-42 174.9 141 66.7
Nn3g19477 Nelumbo nucifera HOM05D005155 ORTHO05D006266 7.5e-41 171.8 257 44.7
Os11g0266000 Oryza sativa ssp. japonica HOM05D005155 ORTHO05D006266 7.5e-41 171.8 183 50.8
SEGI_31719 Sequoiadendron giganteum HOM05D005155 ORTHO05D006266 1.2e-38 164.5 186 52.2
Zm00001eb298370 Zea mays HOM05D005155 ORTHO05D006266 7.8e-38 161.8 179 54.7
QL04p067008 Quercus lobata HOM05D005155 ORTHO05D006266 8.6e-37 158.3 240 54.2
ATR0225G032 Amborella trichopoda HOM05D005155 ORTHO05D006266 1.1e-36 157.9 289 38.4
Cc00_g18660 Coffea canephora HOM05D005155 ORTHO05D006266 3.3e-36 156.4 113 74.3
Lj1A800T38 Lonicera japonica HOM05D005155 ORTHO05D006266 4.3e-36 156.0 304 44.1
Cc00_g14350 Coffea canephora HOM05D005155 ORTHO05D006266 6.8e-34 148.7 114 71.1
Nn1g02050 Nelumbo nucifera HOM05D005155 ORTHO05D006266 7.6e-33 145.2 281 39.5
Cc07_g20190 Coffea canephora HOM05D005155 ORTHO05D006266 9.9e-33 144.8 106 74.5
CiPaw.03G283900 Carya illinoinensis HOM05D005155 ORTHO05D006266 2.9e-32 143.3 266 40.2
PSO782G5585 Papaver somniferum HOM05D005155 ORTHO05D006266 8.7e-29 131.7 271 35.8
AUR62008242 Chenopodium quinoa HOM05D005155 ORTHO05D006266 3.6e-27 126.3 143 53.1
PSO782G0752 Papaver somniferum HOM05D005155 ORTHO05D006266 1.3e-24 117.9 224 37.5
QL01p014609 Quercus lobata HOM05D005155 ORTHO05D006266 5.1e-21 105.9 91 63.7
AagrBONN_evm.TU.Sc2ySwM_368.2873 Anthoceros agrestis HOM05D005155 ORTHO05D006266 7.3e-20 102.1 180 38.9
Cc07_g20180 Coffea canephora HOM05D005155 ORTHO05D006266 9.6e-20 101.7 81 64.2
Hma1.2p1_1388F.1_g279940 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 1.3e-19 101.3 68 72.1
Mapoly0148s0006 Marchantia polymorpha HOM05D005155 ORTHO05D006266 3.8e-16 89.7 164 34.8
Nn1g02049 Nelumbo nucifera HOM05D005155 ORTHO05D006266 6.4e-16 89.0 170 37.6
Pp3c22_320 Physcomitrium patens HOM05D005155 ORTHO05D006266 1.0e-13 81.6 180 33.3
Pp3c22_322 Physcomitrium patens HOM05D005155 ORTHO05D006266 1.0e-13 81.6 180 33.3
MD17G1119400 Malus domestica HOM05D005155 ORTHO05D006266 3.9e-13 79.7 58 67.2
CBR_g23113 Chara braunii HOM05D005155 ORTHO05D006266 1.3e-11 74.7 159 34.6
Cc00_g29960 Coffea canephora HOM05D005155 ORTHO05D006266 8.1e-11 72.0 68 58.8
PRCOL_00000835 Prasinoderma coloniale HOM05D005155 ORTHO05D006266 1.3e-08 64.7 138 39.9
QL03p064628 Quercus lobata HOM05D005155 ORTHO05D006266 1.2e-06 58.2 260 27.7


User provided reference genes

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