Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 1.7e-183 646.0 352 100.0
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 6.7e-63 245.4 167 91.0
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 4.1e-60 236.1 158 96.2
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 7.0e-60 235.3 174 84.5
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 1.6e-59 234.2 157 96.2
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 1.6e-59 234.2 157 94.9
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.9e-57 227.3 167 86.8
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 4.4e-54 216.1 164 67.1
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 5.7e-54 215.7 158 80.4
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 6.3e-53 212.2 158 75.9
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 1.1e-52 211.5 159 83.0
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 2.4e-52 210.3 161 76.4
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 9.1e-52 208.4 159 83.6
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 1.2e-51 208.0 158 76.6
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 1.6e-51 207.6 155 77.4
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 2.7e-51 206.8 153 72.5
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 3.5e-51 206.5 161 77.6
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 3.5e-51 206.5 161 71.4
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 3.5e-51 206.5 159 76.1
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 3.5e-51 206.5 159 66.0
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 4.5e-51 206.1 158 65.8
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 1.0e-50 204.9 158 66.5
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 1.7e-50 204.1 159 84.9
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 2.2e-50 203.8 160 73.1
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.2e-50 203.8 159 66.0
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.2e-50 203.8 159 66.0
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 2.2e-50 203.8 158 80.4
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 6.5e-50 202.2 159 67.3
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 6.5e-50 202.2 158 73.4
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 1.1e-49 201.4 159 67.3
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 1.1e-49 201.4 158 70.3
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 1.1e-49 201.4 158 65.8
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 1.9e-49 200.7 158 72.2
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.9e-49 200.7 161 65.2
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 1.9e-49 200.7 158 62.7
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 3.2e-49 199.9 162 68.5
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 3.2e-49 199.9 163 64.4
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 4.2e-49 199.5 162 66.0
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 4.2e-49 199.5 161 77.0
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 9.4e-49 198.4 158 65.2
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 9.4e-49 198.4 162 64.2
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 9.4e-49 198.4 163 63.8
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 2.1e-48 197.2 160 72.5
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 2.1e-48 197.2 158 72.2
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 2.7e-48 196.8 160 62.5
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 2.7e-48 196.8 160 62.5
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 2.7e-48 196.8 158 63.3
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 2.7e-48 196.8 158 63.3
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 2.7e-48 196.8 158 79.1
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 3.6e-48 196.4 160 71.9
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 4.7e-48 196.1 162 72.2
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 4.7e-48 196.1 163 74.2
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 6.1e-48 195.7 158 63.3
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 6.1e-48 195.7 199 63.8
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 1.0e-47 194.9 160 76.9
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 1.4e-47 194.5 162 74.1
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 3.0e-47 193.4 158 78.5
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 5.2e-47 192.6 160 65.0
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 6.8e-47 192.2 158 64.6
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 8.8e-47 191.8 214 53.3
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 8.8e-47 191.8 160 68.1
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 1.2e-46 191.4 158 65.8
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 1.5e-46 191.0 161 62.7
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 2.6e-46 190.3 161 60.9
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 2.6e-46 190.3 157 65.0
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 3.4e-46 189.9 159 68.6
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 4.4e-46 189.5 150 80.7
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 5.7e-46 189.1 161 62.1
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 7.5e-46 188.7 161 69.6
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 9.8e-46 188.3 161 62.1
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 9.8e-46 188.3 166 65.7
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 9.8e-46 188.3 166 65.7
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 9.8e-46 188.3 166 74.1
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 9.8e-46 188.3 159 66.0
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 1.3e-45 188.0 166 70.5
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 1.3e-45 188.0 166 70.5
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 1.3e-45 188.0 158 62.0
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 1.7e-45 187.6 146 81.5
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 2.2e-45 187.2 159 71.1
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 2.2e-45 187.2 158 60.1
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 2.8e-45 186.8 224 60.7
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 2.8e-45 186.8 224 60.7
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 2.8e-45 186.8 161 70.2
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 2.8e-45 186.8 158 70.9
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 2.8e-45 186.8 171 59.1
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 4.8e-45 186.0 158 81.6
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 4.8e-45 186.0 140 80.0
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 8.3e-45 185.3 193 59.1
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 1.1e-44 184.9 164 71.3
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 1.4e-44 184.5 170 57.6
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 5.4e-44 182.6 158 59.5
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 5.4e-44 182.6 158 80.4
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 7.0e-44 182.2 161 74.5
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 1.6e-43 181.0 160 71.9
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 2.7e-43 180.3 161 64.0
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 2.7e-43 180.3 170 71.8
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 2.7e-43 180.3 152 61.2
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 4.5e-43 179.5 158 65.2
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 1.7e-42 177.6 158 72.8
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 1.9e-41 174.1 90 87.8
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 5.5e-41 172.6 162 69.1
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 4.7e-40 169.5 158 57.0
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 3.0e-39 166.8 140 80.0
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 4.0e-39 166.4 91 84.6
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 4.0e-39 166.4 91 84.6
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 2.0e-38 164.1 91 81.3
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 4.4e-38 162.9 91 83.5
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 4.9e-37 159.5 86 84.9
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 1.8e-36 157.5 89 77.5
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 2.4e-36 157.1 89 78.7
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 5.4e-36 156.0 163 63.8
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 7.0e-36 155.6 91 80.2
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 9.2e-36 155.2 162 61.1
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 2.0e-35 154.1 162 59.3
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 3.5e-35 153.3 91 74.7
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 5.6e-33 146.0 152 73.0
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 2.2e-29 134.0 158 57.6
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 7.0e-28 129.0 121 56.2
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 2.0e-27 127.5 120 67.5
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 3.0e-26 123.6 65 86.2
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.5e-25 121.3 64 87.5
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 4.3e-25 119.8 64 84.4
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 4.7e-24 116.3 59 88.1
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 7.0e-20 102.4 60 76.7
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 9.2e-20 102.1 84 51.2
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 3.6e-16 90.1 97 45.4
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 1.5e-14 84.7 74 50.0
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 1.1e-12 78.6 82 92.7
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.3e-10 70.9 38 81.6
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 4.0e-07 60.1 76 75.0
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 7.6e-06 55.8 57 49.1


User provided reference genes

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