Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G70.11 Capsicum annuum HOM05D006307 ORTHO05D008123 6.5e-73 277.3 143 100.0
CAN.G77.11 Capsicum annuum HOM05D006307 ORTHO05D008123 1.3e-41 173.3 142 69.7
PGSC0003DMG400005260 Solanum tuberosum HOM05D006307 ORTHO05D008123 8.0e-39 164.1 107 80.4
Sopen03g025310 Solanum pennellii HOM05D006307 ORTHO05D008123 2.3e-38 162.5 107 79.4
Nitab4.5_0000103g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 4.9e-36 154.8 108 78.7
Nitab4.5_0001493g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 3.1e-35 152.1 108 75.9
Dinv34513 Davidia involucrata HOM05D006307 ORTHO05D008123 1.7e-33 146.4 111 68.5
Actinidia07776 Actinidia chinensis HOM05D006307 ORTHO05D008123 2.1e-31 139.4 110 69.1
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 1.0e-30 137.1 105 67.6
Cc02_g05030 Coffea canephora HOM05D006307 ORTHO05D008123 1.4e-30 136.7 108 63.9
Rhsim09G0187400 Rhododendron simsii HOM05D006307 ORTHO05D008123 3.0e-30 135.6 105 71.4
Cc02_g04860 Coffea canephora HOM05D006307 ORTHO05D008123 3.4e-29 132.1 108 63.0
Dinv21870 Davidia involucrata HOM05D006307 ORTHO05D008123 3.4e-29 132.1 115 64.3
Actinidia01018 Actinidia chinensis HOM05D006307 ORTHO05D008123 2.9e-28 129.0 112 67.0
Ciclev10033529m.g Citrus clementina HOM05D006307 ORTHO05D008123 2.4e-27 125.9 105 62.9
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 7.0e-27 124.4 105 61.0
TAR633G2235 Trochodendron aralioides HOM05D006307 ORTHO05D008123 2.7e-26 122.5 111 63.1
MSTRG.27248 Avicennia marina HOM05D006307 ORTHO05D008123 3.5e-26 122.1 103 64.1
Nn2g10220 Nelumbo nucifera HOM05D006307 ORTHO05D008123 3.5e-26 122.1 113 60.2
Gorai.012G012900 Gossypium raimondii HOM05D006307 ORTHO05D008123 6.0e-26 121.3 94 69.1
GSVIVG01032869001 Vitis vinifera HOM05D006307 ORTHO05D008123 6.0e-26 121.3 109 61.5
AUR62031669 Chenopodium quinoa HOM05D006307 ORTHO05D008123 7.8e-26 120.9 108 60.2
Gohir.A05G404900 Gossypium hirsutum HOM05D006307 ORTHO05D008123 1.0e-25 120.6 94 68.1
Gohir.D04G010800 Gossypium hirsutum HOM05D006307 ORTHO05D008123 1.3e-25 120.2 94 68.1
Potri.019G065500 Populus trichocarpa HOM05D006307 ORTHO05D008123 1.3e-25 120.2 108 60.2
Atru.chr12.221 Acer truncatum HOM05D006307 ORTHO05D008123 2.3e-25 119.4 92 66.3
Manes.07G141400 Manihot esculenta HOM05D006307 ORTHO05D008123 3.0e-25 119.0 102 60.8
Sabra19G0079000 Salix brachista HOM05D006307 ORTHO05D008123 3.0e-25 119.0 107 57.9
CiPaw.01G088900 Carya illinoinensis HOM05D006307 ORTHO05D008123 6.6e-25 117.9 109 63.3
AUR62032552 Chenopodium quinoa HOM05D006307 ORTHO05D008123 6.6e-25 117.9 107 58.9
COL.COLO4_19496 Corchorus olitorius HOM05D006307 ORTHO05D008123 6.6e-25 117.9 85 70.6
MD01G1172000 Malus domestica HOM05D006307 ORTHO05D008123 6.6e-25 117.9 105 62.9
CANSAT56G1764 Cannabis sativa HOM05D006307 ORTHO05D008123 1.9e-24 116.3 101 63.4
Prupe.2G267300 Prunus persica HOM05D006307 ORTHO05D008123 1.9e-24 116.3 108 58.3
Thecc.10G187500 Theobroma cacao HOM05D006307 ORTHO05D008123 3.3e-24 115.5 92 65.2
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 7.3e-24 114.4 111 59.5
TWI09G1245 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 7.3e-24 114.4 109 58.7
EL10Ac2g02693 Beta vulgaris HOM05D006307 ORTHO05D008123 2.1e-23 112.8 113 56.6
FvH4_7g26311 Fragaria vesca HOM05D006307 ORTHO05D008123 2.8e-23 112.5 92 64.1
FAN01G0868 Fragaria x ananassa HOM05D006307 ORTHO05D008123 2.8e-23 112.5 92 64.1
RcHm_v2.0_Chr1g0372771 Rosa chinensis HOM05D006307 ORTHO05D008123 2.8e-23 112.5 92 64.1
Migut.F00561 Erythranthe guttata HOM05D006307 ORTHO05D008123 3.6e-23 112.1 107 57.9
Lsat_1_v5_gn_8_11140 Lactuca sativa HOM05D006307 ORTHO05D008123 3.6e-23 112.1 104 58.7
MD07G1238500 Malus domestica HOM05D006307 ORTHO05D008123 3.6e-23 112.1 91 64.8
Cpa.g.sc65.81 Carica papaya HOM05D006307 ORTHO05D008123 4.7e-23 111.7 102 56.9
Haze_17382 Corylus avellana HOM05D006307 ORTHO05D008123 6.2e-23 111.3 108 61.1
QL08p065320 Quercus lobata HOM05D006307 ORTHO05D008123 1.8e-22 109.8 124 55.6
ECA233G0944 Erigeron canadensis HOM05D006307 ORTHO05D008123 4.0e-22 108.6 104 55.8
HanXRQChr14g0441281 Helianthus annuus HOM05D006307 ORTHO05D008123 4.0e-22 108.6 104 58.7
Ah.10g029650 Amaranthus hybridus HOM05D006307 ORTHO05D008123 6.8e-22 107.8 103 59.2
Cfa001179 Carpinus fangiana HOM05D006307 ORTHO05D008123 1.2e-21 107.1 109 58.7
Eucgr.G03171 Eucalyptus grandis HOM05D006307 ORTHO05D008123 1.2e-21 107.1 110 54.5
TWI73G0583 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 1.2e-21 107.1 87 64.4
Duzib114G0239 Durio zibethinus HOM05D006307 ORTHO05D008123 2.0e-21 106.3 106 53.8
THA.LOC104824373 Tarenaya hassleriana HOM05D006307 ORTHO05D008123 2.0e-21 106.3 88 67.0
Thhalv10016922m.g Eutrema salsugineum HOM05D006307 ORTHO05D008123 2.6e-21 105.9 109 55.0
Glyma.14G187500 Glycine max HOM05D006307 ORTHO05D008123 1.7e-20 103.2 114 52.6
Phvul.008G187400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 1.7e-20 103.2 92 59.8
VMungo0647G2347 Vigna mungo HOM05D006307 ORTHO05D008123 2.2e-20 102.8 92 60.9
AL4G38760 Arabidopsis lyrata HOM05D006307 ORTHO05D008123 6.4e-20 101.3 108 54.6
Glyma.04G224600 Glycine max HOM05D006307 ORTHO05D008123 6.4e-20 101.3 106 52.8
Ah.12g064690 Amaranthus hybridus HOM05D006307 ORTHO05D008123 8.3e-20 100.9 115 54.8
AT2G40815 Arabidopsis thaliana HOM05D006307 ORTHO05D008123 8.3e-20 100.9 108 53.7
Glyma.02G220300 Glycine max HOM05D006307 ORTHO05D008123 8.3e-20 100.9 92 58.7
Eucgr.J00096 Eucalyptus grandis HOM05D006307 ORTHO05D008123 1.1e-19 100.5 99 57.6
Ca_05544_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 1.4e-19 100.1 105 53.3
PGR142G3034 Punica granatum HOM05D006307 ORTHO05D008123 1.9e-19 99.8 91 60.4
CDE04G1875 Ceratophyllum demersum HOM05D006307 ORTHO05D008123 2.4e-19 99.4 100 53.0
Carub.0004s2313 Capsella rubella HOM05D006307 ORTHO05D008123 4.1e-19 98.6 108 51.9
Lalb_Chr10g0102911 Lupinus albus HOM05D006307 ORTHO05D008123 4.1e-19 98.6 92 55.4
Solyc03g095300.4 Solanum lycopersicum HOM05D006307 ORTHO05D008123 7.0e-19 97.8 65 76.9
BraA03t11519Z Brassica rapa HOM05D006307 ORTHO05D008123 9.2e-19 97.4 95 57.9
CARHR135930 Cardamine hirsuta HOM05D006307 ORTHO05D008123 9.2e-19 97.4 108 51.9
TPR.G27912 Trifolium pratense HOM05D006307 ORTHO05D008123 9.2e-19 97.4 85 60.0
PGR044G1713 Punica granatum HOM05D006307 ORTHO05D008123 1.2e-18 97.1 105 51.4
Sc11g0006110 Simmondsia chinensis HOM05D006307 ORTHO05D008123 1.2e-18 97.1 101 54.5
BcaB01g03513 Brassica carinata HOM05D006307 ORTHO05D008123 1.6e-18 96.7 101 54.5
A03p22960 Brassica napus HOM05D006307 ORTHO05D008123 1.6e-18 96.7 105 53.3
C03p27240 Brassica napus HOM05D006307 ORTHO05D008123 1.6e-18 96.7 95 56.8
BolC3t15106H Brassica oleracea HOM05D006307 ORTHO05D008123 2.1e-18 96.3 95 56.8
CSS0034849 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 3.5e-18 95.5 91 62.6
Sp4g23140 Schrenkiella parvula HOM05D006307 ORTHO05D008123 4.6e-18 95.1 109 49.5
arahy.Tifrunner.gnm1.ann1.8Y6D9P Arachis hypogaea HOM05D006307 ORTHO05D008123 1.0e-17 94.0 111 48.6
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 1.0e-17 94.0 90 57.8
Medtr5g069320 Medicago truncatula HOM05D006307 ORTHO05D008123 1.7e-17 93.2 86 57.0
SalBow3G4635 Salvia bowleyana HOM05D006307 ORTHO05D008123 1.7e-17 93.2 87 60.9
arahy.Tifrunner.gnm1.ann1.78S8ZN Arachis hypogaea HOM05D006307 ORTHO05D008123 2.3e-17 92.8 83 57.8
Lalb_Chr08g0239321 Lupinus albus HOM05D006307 ORTHO05D008123 2.3e-17 92.8 103 54.4
LjContig00155g0000391 Lotus japonicus HOM05D006307 ORTHO05D008123 5.0e-17 91.7 89 53.9
Medtr5g068530 Medicago truncatula HOM05D006307 ORTHO05D008123 5.0e-17 91.7 101 50.5
Psat2g060080 Pisum sativum HOM05D006307 ORTHO05D008123 5.0e-17 91.7 102 50.0
arahy.Tifrunner.gnm1.ann1.SS94V0 Arachis hypogaea HOM05D006307 ORTHO05D008123 1.1e-16 90.5 90 55.6
BcaC01g05375 Brassica carinata HOM05D006307 ORTHO05D008123 1.9e-16 89.7 94 53.2
Glyma.06G140100 Glycine max HOM05D006307 ORTHO05D008123 3.3e-16 89.0 106 48.1
Aqoxy4G03315 Aquilegia oxysepala HOM05D006307 ORTHO05D008123 5.6e-16 88.2 79 64.6
C03p27220 Brassica napus HOM05D006307 ORTHO05D008123 5.6e-16 88.2 94 53.2
BolC3t15104H Brassica oleracea HOM05D006307 ORTHO05D008123 5.6e-16 88.2 94 53.2
Os01g0818100 Oryza sativa ssp. japonica HOM05D006307 ORTHO05D008123 7.3e-16 87.8 97 46.4
A03p22950 Brassica napus HOM05D006307 ORTHO05D008123 1.6e-15 86.7 94 51.1
BraA03t11518Z Brassica rapa HOM05D006307 ORTHO05D008123 1.6e-15 86.7 94 52.1
Aa31LG3G1290 Aethionema arabicum HOM05D006307 ORTHO05D008123 2.8e-15 85.9 93 52.7
PSO384G0230 Papaver somniferum HOM05D006307 ORTHO05D008123 4.7e-15 85.1 82 53.7
Medtr3g093560 Medicago truncatula HOM05D006307 ORTHO05D008123 6.2e-15 84.7 84 53.6
Phvul.009G041400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 6.2e-15 84.7 85 55.3
PSO339G5993 Papaver somniferum HOM05D006307 ORTHO05D008123 8.1e-15 84.3 82 53.7
Lj1g0008062 Lotus japonicus HOM05D006307 ORTHO05D008123 1.8e-14 83.2 105 44.8
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 2.3e-14 82.8 105 47.6
ATR1127G014 Amborella trichopoda HOM05D006307 ORTHO05D008123 4.0e-14 82.0 92 51.1
TPR.G13964 Trifolium pratense HOM05D006307 ORTHO05D008123 4.0e-14 82.0 87 51.7
Psat5g070080 Pisum sativum HOM05D006307 ORTHO05D008123 5.2e-14 81.6 87 55.2
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 8.9e-14 80.9 102 51.0
HPP92_019043 Vanilla planifolia HOM05D006307 ORTHO05D008123 4.4e-13 78.6 78 51.3
Zm00001eb149710 Zea mays HOM05D006307 ORTHO05D008123 8.3e-12 74.3 80 48.8
BcaC01g05374 Brassica carinata HOM05D006307 ORTHO05D008123 2.7e-10 69.3 76 52.6
C03p27230 Brassica napus HOM05D006307 ORTHO05D008123 3.5e-10 68.9 101 43.6
BolC3t15105H Brassica oleracea HOM05D006307 ORTHO05D008123 3.5e-10 68.9 101 43.6
Lj4g0001384 Lotus japonicus HOM05D006307 ORTHO05D008123 1.9e-08 63.2 69 55.1
BcaB01g03514 Brassica carinata HOM05D006307 ORTHO05D008123 1.6e-07 60.1 107 40.2


User provided reference genes

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