Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 5.2e-232 807.4 411 100.0
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 1.0e-171 607.1 408 78.9
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 4.9e-166 588.2 408 77.2
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 2.3e-163 579.3 408 76.0
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 2.7e-148 529.3 416 70.4
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 6.7e-147 524.6 415 70.8
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 4.5e-143 511.9 406 70.2
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 8.1e-76 288.5 448 44.6
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 4.4e-74 282.7 437 45.3
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 8.4e-65 251.9 433 41.3
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 5.4e-64 249.2 450 41.6
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 4.6e-63 246.1 444 41.7
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 1.3e-62 244.6 442 41.2
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.9e-61 240.7 438 39.5
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 2.5e-61 240.4 430 39.8
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 1.3e-60 238.0 430 40.5
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 4.0e-59 233.0 428 40.4
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 5.8e-58 229.2 427 39.8
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 9.9e-58 228.4 444 41.0
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 2.2e-57 227.3 458 39.7
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 3.5e-55 219.9 438 38.6
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 7.9e-55 218.8 437 38.2
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 2.5e-53 213.8 427 38.4
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 4.3e-53 213.0 362 42.3
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 9.6e-53 211.8 430 36.7
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 6.2e-52 209.1 439 39.0
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 1.8e-51 207.6 450 38.2
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.2e-50 204.9 442 37.6
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 2.0e-50 204.1 417 38.4
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 1.7e-49 201.1 427 37.0
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 1.7e-49 201.1 446 37.7
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 3.8e-49 199.9 460 35.2
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 8.4e-49 198.7 544 33.3
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 8.4e-49 198.7 446 34.3
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 8.4e-49 198.7 458 36.7
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.4e-48 198.0 439 36.7
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 1.9e-48 197.6 446 37.9
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 4.2e-48 196.4 447 37.4
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 5.5e-48 196.1 428 36.4
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 3.5e-47 193.4 433 37.9
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 4.6e-47 193.0 448 36.6
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 6.0e-47 192.6 448 36.6
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 6.0e-47 192.6 440 36.1
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 1.3e-46 191.4 445 35.3
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.3e-46 191.4 379 39.8
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 1.8e-46 191.0 439 35.8
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 3.9e-46 189.9 438 36.8
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 5.1e-46 189.5 447 38.5
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 5.1e-46 189.5 446 37.0
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 6.7e-46 189.1 444 37.4
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 6.7e-46 189.1 459 34.4
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 8.7e-46 188.7 448 34.4
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 1.1e-45 188.3 458 34.9
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 1.5e-45 188.0 441 36.1
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 1.5e-45 188.0 427 34.9
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 4.3e-45 186.4 443 35.0
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 7.4e-45 185.7 445 34.6
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 7.4e-45 185.7 447 34.7
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 7.4e-45 185.7 459 35.5
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 7.4e-45 185.7 463 35.9
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.6e-44 184.5 433 36.5
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 3.7e-44 183.3 455 34.5
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 3.7e-44 183.3 455 35.6
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 6.3e-44 182.6 452 35.8
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.2e-42 178.3 447 36.7
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 1.5e-42 177.9 451 34.1
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 2.6e-42 177.2 422 36.5
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 3.4e-42 176.8 423 34.8
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 3.4e-42 176.8 447 34.7
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 3.4e-42 176.8 446 34.3
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 4.5e-42 176.4 436 34.4
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 1.0e-41 175.3 452 35.0
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.7e-41 174.5 453 34.0
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 2.2e-41 174.1 425 35.1
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 5.0e-41 172.9 417 34.3
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 8.4e-41 172.2 413 35.6
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 1.1e-40 171.8 453 33.1
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.9e-40 171.0 424 36.1
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 2.5e-40 170.6 438 33.1
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 1.2e-39 168.3 470 33.6
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.1e-39 167.5 396 34.6
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 4.6e-39 166.4 420 35.7
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 1.0e-38 165.2 429 35.7
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 1.0e-38 165.2 348 36.5
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.3e-38 164.9 417 35.0
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 2.3e-38 164.1 446 32.3
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 3.0e-38 163.7 354 36.2
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 3.9e-38 163.3 299 39.5
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 5.1e-38 162.9 428 33.9
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 6.7e-38 162.5 438 34.0
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.1e-37 161.8 413 34.4
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 5.7e-37 159.5 434 33.4
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 5.7e-37 159.5 475 34.5
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 7.4e-37 159.1 357 35.6
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 9.7e-37 158.7 447 32.4
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 1.3e-36 158.3 445 33.5
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 1.6e-36 157.9 461 32.3
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.2e-36 157.5 412 34.0
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 2.2e-36 157.5 435 31.7
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 3.7e-36 156.8 377 37.7
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 4.8e-36 156.4 449 32.7
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 6.3e-36 156.0 446 32.7
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 6.3e-36 156.0 431 33.6
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 8.2e-36 155.6 479 32.4
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 1.1e-35 155.2 425 34.1
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 2.4e-35 154.1 414 35.0
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 3.1e-35 153.7 423 32.9
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.1e-35 153.3 413 34.1
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.1e-35 153.3 445 32.6
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 5.3e-35 152.9 422 34.6
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 6.9e-35 152.5 420 32.9
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 9.0e-35 152.1 434 32.7
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 3.4e-34 150.2 439 32.6
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 4.5e-34 149.8 407 35.4
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 7.7e-34 149.1 435 32.6
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 1.0e-33 148.7 420 32.1
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 1.0e-33 148.7 410 32.0
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 1.3e-33 148.3 353 36.3
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 1.7e-33 147.9 456 32.2
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 1.7e-33 147.9 424 30.9
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 5.0e-33 146.4 447 32.9
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 6.5e-33 146.0 354 35.6
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 8.5e-33 145.6 490 32.4
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 5.5e-32 142.9 423 31.7
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 1.2e-31 141.7 442 31.4
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 2.1e-31 141.0 423 31.4
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 2.1e-31 141.0 422 32.0
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 3.6e-31 140.2 423 32.2
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 3.6e-31 140.2 451 31.5
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 4.6e-31 139.8 438 32.6
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 4.6e-31 139.8 454 29.7
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 7.9e-31 139.0 437 33.4
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 3.0e-30 137.1 397 31.7
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 3.9e-30 136.7 504 31.7
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 3.9e-30 136.7 425 31.8
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 8.8e-30 135.6 465 31.0
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 8.8e-30 135.6 424 31.4
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 1.1e-29 135.2 425 32.5
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 1.5e-29 134.8 431 30.9
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 2.5e-29 134.0 206 42.7
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 2.2e-28 131.0 436 30.7
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 2.8e-28 130.6 437 29.1
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 6.3e-28 129.4 436 31.7
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 8.2e-28 129.0 354 32.2
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.4e-27 127.5 343 32.4
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 3.1e-27 127.1 432 31.2
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 4.1e-27 126.7 338 33.1
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 4.1e-27 126.7 405 33.6
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 6.9e-27 125.9 309 35.0
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 9.1e-27 125.6 312 36.5
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 9.1e-27 125.6 447 28.2
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 5.9e-26 122.9 424 30.4
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 5.9e-26 122.9 402 31.8
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.0e-25 122.1 275 37.1
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 3.8e-25 120.2 422 30.3
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 8.5e-25 119.0 444 31.3
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 8.5e-25 119.0 416 31.5
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 1.2e-23 115.2 182 41.8
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 1.6e-23 114.8 370 33.0
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 6.1e-23 112.8 322 34.2
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 5.1e-22 109.8 424 28.5
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 5.3e-19 99.8 176 38.1
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 1.2e-18 98.6 415 31.3
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 1.6e-15 88.2 335 27.2
C07p23110 Brassica napus HOM05D003379 ORTHO05D003862 2.6e-13 80.9 232 31.0
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 9.7e-13 79.0 359 27.3
C09p44800 Brassica napus HOM05D003379 ORTHO05D003862 1.3e-12 78.6 238 30.3
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 2.8e-12 77.4 277 30.0
BolC7t42848H Brassica oleracea HOM05D003379 ORTHO05D003862 1.4e-11 75.1 194 34.0
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 2.0e-10 71.2 455 27.0
C01p04570 Brassica napus HOM05D003379 ORTHO05D003862 3.5e-10 70.5 204 30.4
C09p09610 Brassica napus HOM05D003379 ORTHO05D003862 1.0e-09 68.9 125 38.4
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 1.3e-09 68.6 142 36.6
C08p33300 Brassica napus HOM05D003379 ORTHO05D003862 1.7e-09 68.2 122 36.9
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 6.5e-09 66.2 269 28.6
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 1.5e-08 65.1 266 31.6
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 1.9e-08 64.7 223 28.7
Ah.14g088790 Amaranthus hybridus HOM05D003379 ORTHO05D003862 2.5e-08 64.3 194 35.6
BcaC09g48308 Brassica carinata HOM05D003379 ORTHO05D003862 1.0e-06 58.9 73 47.9
BolC9t57591H Brassica oleracea HOM05D013459 ORTHO05D018689 1.0e-06 58.9 179 29.6


User provided reference genes

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