Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G699.10 Capsicum annuum HOM05D004980 ORTHO05D043407 2.3e-48 195.3 100 100.0
CAN.G631.2 Capsicum annuum HOM05D004980 ORTHO05D043407 7.3e-23 110.5 69 79.7
CAN.G337.68 Capsicum annuum HOM05D004980 ORTHO05D006505 3.4e-20 101.7 72 70.8
Peaxi162Scf00235g00521 Petunia axillaris HOM05D004980 ORTHO05D006505 9.9e-20 100.1 75 68.0
PGSC0003DMG400028768 Solanum tuberosum HOM05D004980 ORTHO05D006505 4.9e-19 97.8 68 72.1
PGSC0003DMG400022209 Solanum tuberosum HOM05D004980 ORTHO05D006505 6.4e-19 97.4 72 69.4
Solyc07g064850.3 Solanum lycopersicum HOM05D004980 ORTHO05D006505 1.9e-18 95.9 68 69.1
Sopen07g033050 Solanum pennellii HOM05D004980 ORTHO05D006505 1.9e-18 95.9 68 69.1
Actinidia05071 Actinidia chinensis HOM05D004980 ORTHO05D006505 9.3e-18 93.6 72 63.9
Lju1319A3G37 Lonicera japonica HOM05D004980 ORTHO05D006505 6.0e-17 90.9 69 66.7
Ciclev10008197m.g Citrus clementina HOM05D004980 ORTHO05D006505 3.9e-16 88.2 68 61.8
DCAR_016653 Daucus carota HOM05D004980 ORTHO05D006505 3.9e-16 88.2 68 63.2
Actinidia32274 Actinidia chinensis HOM05D004980 ORTHO05D006505 5.1e-16 87.8 72 61.1
Glyma.02G293600 Glycine max HOM05D004980 ORTHO05D006505 5.1e-16 87.8 68 61.8
VMungo0647G0060 Vigna mungo HOM05D004980 ORTHO05D006505 5.1e-16 87.8 92 52.2
CANSAT11G1616 Cannabis sativa HOM05D004980 ORTHO05D006505 6.7e-16 87.4 72 59.7
FAN25G0097 Fragaria x ananassa HOM05D004980 ORTHO05D006505 6.7e-16 87.4 72 56.9
Phvul.008G270700 Phaseolus vulgaris HOM05D004980 ORTHO05D006505 6.7e-16 87.4 68 63.2
Lj1A365T17 Lonicera japonica HOM05D004980 ORTHO05D006505 1.1e-15 86.7 69 63.8
Oeu057850.1 Olea europaea HOM05D004980 ORTHO05D006505 1.5e-15 86.3 68 60.3
Rhsim06G0222400 Rhododendron simsii HOM05D004980 ORTHO05D006505 1.5e-15 86.3 72 61.1
CSS0002819 Camellia sinensis var. sinensis HOM05D004980 ORTHO05D006505 2.5e-15 85.5 92 50.0
TPR.G1188 Trifolium pratense HOM05D004980 ORTHO05D006505 3.3e-15 85.1 68 60.3
arahy.Tifrunner.gnm1.ann1.C5REQA Arachis hypogaea HOM05D004980 ORTHO05D006505 5.6e-15 84.3 72 55.6
Lalb_Chr17g0348661 Lupinus albus HOM05D004980 ORTHO05D006505 5.6e-15 84.3 72 58.3
vmacro22325 Vaccinium macrocarpon HOM05D004980 ORTHO05D006505 5.6e-15 84.3 101 50.5
CSS0031886 Camellia sinensis var. sinensis HOM05D004980 ORTHO05D006505 7.4e-15 84.0 68 58.8
Ca_06343_v3 Cicer arietinum L. HOM05D004980 ORTHO05D006505 7.4e-15 84.0 68 60.3
Migut.N00646 Erythranthe guttata HOM05D004980 ORTHO05D006505 7.4e-15 84.0 70 61.4
Glyma.14G019100 Glycine max HOM05D004980 ORTHO05D006505 7.4e-15 84.0 68 58.8
Glyma.14G020732 Glycine max HOM05D004980 ORTHO05D006505 7.4e-15 84.0 68 58.8
MD03G1195100 Malus domestica HOM05D004980 ORTHO05D006505 7.4e-15 84.0 68 58.8
Manes.03G132700 Manihot esculenta HOM05D004980 ORTHO05D006505 7.4e-15 84.0 72 55.6
Medtr5g093580 Medicago truncatula HOM05D004980 ORTHO05D006505 7.4e-15 84.0 68 60.3
EL10Ac4g07745 Beta vulgaris HOM05D004980 ORTHO05D006505 9.6e-15 83.6 72 56.9
FAN21G0499 Fragaria x ananassa HOM05D004980 ORTHO05D006505 9.6e-15 83.6 72 55.6
Psat2g012600 Pisum sativum HOM05D004980 ORTHO05D006505 9.6e-15 83.6 72 56.9
Ah.06g182490 Amaranthus hybridus HOM05D004980 ORTHO05D006505 1.3e-14 83.2 72 55.6
LjContig00272g0012473 Lotus japonicus HOM05D004980 ORTHO05D006505 1.6e-14 82.8 68 60.3
TPR.G4803 Trifolium pratense HOM05D004980 ORTHO05D006505 1.6e-14 82.8 68 57.4
Dinv40789 Davidia involucrata HOM05D004980 ORTHO05D006505 2.1e-14 82.4 72 58.3
Lsat_1_v5_gn_5_3221 Lactuca sativa HOM05D004980 ORTHO05D006505 2.1e-14 82.4 71 56.3
MD11G1211400 Malus domestica HOM05D004980 ORTHO05D006505 2.1e-14 82.4 68 58.8
TAR624G0219 Trochodendron aralioides HOM05D004980 ORTHO05D006505 2.1e-14 82.4 72 56.9
AUR62015838 Chenopodium quinoa HOM05D004980 ORTHO05D006505 2.8e-14 82.0 72 55.6
AUR62020381 Chenopodium quinoa HOM05D004980 ORTHO05D006505 2.8e-14 82.0 72 55.6
FvH4_3g23360 Fragaria vesca HOM05D004980 ORTHO05D006505 2.8e-14 82.0 72 54.2
FAN11G2764 Fragaria x ananassa HOM05D004980 ORTHO05D006505 2.8e-14 82.0 72 54.2
TAR626G1444 Trochodendron aralioides HOM05D004980 ORTHO05D006505 2.8e-14 82.0 72 56.9
CiPaw.12G132600 Carya illinoinensis HOM05D004980 ORTHO05D006505 3.7e-14 81.6 72 55.6
QL08p007075 Quercus lobata HOM05D004980 ORTHO05D006505 3.7e-14 81.6 72 56.9
arahy.Tifrunner.gnm1.ann1.45FXM1 Arachis hypogaea HOM05D004980 ORTHO05D006505 4.8e-14 81.3 72 55.6
ECA246G3869 Erigeron canadensis HOM05D004980 ORTHO05D006505 4.8e-14 81.3 71 56.3
SGA_v2.0_scaffold95G28711 Striga asiatica HOM05D004980 ORTHO05D006505 4.8e-14 81.3 72 58.3
Atru.chr2.3504 Acer truncatum HOM05D004980 ORTHO05D006505 6.2e-14 80.9 68 58.8
Cpa.g.sc12.256 Carica papaya HOM05D004980 ORTHO05D006505 6.2e-14 80.9 92 45.7
Haze_09726 Corylus avellana HOM05D004980 ORTHO05D006505 6.2e-14 80.9 72 55.6
RcHm_v2.0_Chr5g0041141 Rosa chinensis HOM05D004980 ORTHO05D006505 6.2e-14 80.9 72 54.2
Thecc.07G030400 Theobroma cacao HOM05D004980 ORTHO05D006505 6.2e-14 80.9 72 51.4
MSTRG.17982 Avicennia marina HOM05D004980 ORTHO05D006505 8.1e-14 80.5 72 54.2
Cc08_g05680 Coffea canephora HOM05D004980 ORTHO05D006505 8.1e-14 80.5 68 61.8
Prupe.4G221100 Prunus persica HOM05D004980 ORTHO05D006505 8.1e-14 80.5 68 55.9
SalBow3G0070 Salvia bowleyana HOM05D004980 ORTHO05D006505 8.1e-14 80.5 69 56.5
Cfa020293 Carpinus fangiana HOM05D004980 ORTHO05D006505 1.1e-13 80.1 72 54.2
TWI38G2207 Tripterygium wilfordii HOM05D004980 ORTHO05D006505 1.4e-13 79.7 66 59.1
Potri.001G355800 Populus trichocarpa HOM05D004980 ORTHO05D006505 1.8e-13 79.3 72 55.6
Aqoxy1G02957 Aquilegia oxysepala HOM05D004980 ORTHO05D006505 2.4e-13 79.0 68 57.4
Hund23210 Selenicereus undatus HOM05D004980 ORTHO05D006505 2.4e-13 79.0 72 51.4
Nn3g21061 Nelumbo nucifera HOM05D004980 ORTHO05D006505 3.1e-13 78.6 68 57.4
SGA_v2.0_scaffold77G25279 Striga asiatica HOM05D004980 ORTHO05D006505 3.1e-13 78.6 72 54.2
PSO675G8833 Papaver somniferum HOM05D004980 ORTHO05D006505 4.0e-13 78.2 71 52.1
THA.LOC104813432 Tarenaya hassleriana HOM05D004980 ORTHO05D006505 4.0e-13 78.2 74 52.7
FAN16G1125 Fragaria x ananassa HOM05D004980 ORTHO05D006505 5.3e-13 77.8 72 52.8
HanXRQChr05g0159781 Helianthus annuus HOM05D004980 ORTHO05D006505 6.9e-13 77.4 91 45.1
MBI03_g18682_MAGBIO Magnolia biondii HOM05D004980 ORTHO05D006505 6.9e-13 77.4 68 52.9
COL.COLO4_09708 Corchorus olitorius HOM05D004980 ORTHO05D006505 9.0e-13 77.0 72 48.6
Eucgr.F00711 Eucalyptus grandis HOM05D004980 ORTHO05D006505 9.0e-13 77.0 73 50.7
Sc16g0005820 Simmondsia chinensis HOM05D004980 ORTHO05D006505 1.2e-12 76.6 66 56.1
PSO541G1224 Papaver somniferum HOM05D004980 ORTHO05D006505 2.0e-12 75.9 71 50.7
CAN.G1099.1 Capsicum annuum HOM05D004980 ORTHO05D006505 2.6e-12 75.5 56 69.6
Gohir.1Z049437 Gossypium hirsutum HOM05D004980 ORTHO05D006505 2.6e-12 75.5 72 51.4
Gohir.A01G052750 Gossypium hirsutum HOM05D004980 ORTHO05D006505 2.6e-12 75.5 72 51.4
PGR083G1712 Punica granatum HOM05D004980 ORTHO05D006505 2.6e-12 75.5 67 55.2
THA.LOC104817676 Tarenaya hassleriana HOM05D004980 ORTHO05D006505 2.6e-12 75.5 69 50.7
GSVIVG01037705001 Vitis vinifera HOM05D004980 ORTHO05D006505 2.6e-12 75.5 68 51.5
Gohir.D05G373600 Gossypium hirsutum HOM05D004980 ORTHO05D006505 5.8e-12 74.3 72 50.0
Gorai.009G442300 Gossypium raimondii HOM05D004980 ORTHO05D006505 1.3e-11 73.2 72 50.0
Aa31LG3G11110 Aethionema arabicum HOM05D004980 ORTHO05D006505 1.7e-11 72.8 71 47.9
AL8G30640 Arabidopsis lyrata HOM05D004980 ORTHO05D006505 2.9e-11 72.0 65 52.3
MELO3C014186.2 Cucumis melo HOM05D004980 ORTHO05D006505 2.9e-11 72.0 72 47.2
SHI26580 Sapria himalayana HOM05D004980 ORTHO05D006505 4.9e-11 71.2 66 53.0
ClCG10G005220 Citrullus lanatus HOM05D004980 ORTHO05D006505 6.5e-11 70.9 72 47.2
Duzib268G1663 Durio zibethinus HOM05D004980 ORTHO05D006505 6.5e-11 70.9 72 47.2
CARHR268470 Cardamine hirsuta HOM05D004980 ORTHO05D006505 8.4e-11 70.5 72 50.0
CsaV3_3G004900 Cucumis sativus L. HOM05D004980 ORTHO05D006505 8.4e-11 70.5 72 45.8
AT5G55130 Arabidopsis thaliana HOM05D004980 ORTHO05D006505 1.1e-10 70.1 65 50.8
Thhalv10013463m.g Eutrema salsugineum HOM05D004980 ORTHO05D006505 1.1e-10 70.1 72 50.0
Carub.0008s1543 Capsella rubella HOM05D004980 ORTHO05D006505 1.4e-10 69.7 65 50.8
BcaB08g35877 Brassica carinata HOM05D004980 ORTHO05D006505 1.9e-10 69.3 72 50.0
Sabra16G0233900 Salix brachista HOM05D004980 ORTHO05D006505 1.9e-10 69.3 72 48.6
BcaC03g14262 Brassica carinata HOM05D004980 ORTHO05D006505 2.5e-10 68.9 72 50.0
A10p12400 Brassica napus HOM05D004980 ORTHO05D006505 2.5e-10 68.9 71 49.3
BolC2t07741H Brassica oleracea HOM05D004980 ORTHO05D006505 2.5e-10 68.9 72 50.0
BraA02t06050Z Brassica rapa HOM05D004980 ORTHO05D006505 2.5e-10 68.9 65 50.8
BraA10t43335Z Brassica rapa HOM05D004980 ORTHO05D006505 2.5e-10 68.9 71 49.3
C02p16390 Brassica napus HOM05D004980 ORTHO05D006505 3.2e-10 68.6 72 50.0
C09p45860 Brassica napus HOM05D004980 ORTHO05D006505 3.2e-10 68.6 72 48.6
unitig_61.g26342 Utricularia gibba HOM05D004980 ORTHO05D006505 3.2e-10 68.6 65 53.8
Sp6g17070 Schrenkiella parvula HOM05D004980 ORTHO05D006505 4.2e-10 68.2 70 48.6
BcaC04g20267 Brassica carinata HOM05D004980 ORTHO05D006505 7.1e-10 67.4 72 48.6
BolC9t57438H Brassica oleracea HOM05D004980 ORTHO05D006505 7.1e-10 67.4 72 48.6
A02p09860 Brassica napus HOM05D004980 ORTHO05D006505 9.3e-10 67.0 70 47.1
ATR1128G016 Amborella trichopoda HOM05D004980 ORTHO05D006505 1.6e-09 66.2 66 51.5
Sed0018379 Sechium edule HOM05D004980 ORTHO05D006505 1.3e-08 63.2 68 44.1
Sed0026676 Sechium edule HOM05D004980 ORTHO05D006505 1.3e-08 63.2 68 42.6
CDE06G0656 Ceratophyllum demersum HOM05D004980 ORTHO05D006505 3.3e-07 58.5 67 43.3
Zm00001eb188720 Zea mays HOM05D004980 ORTHO05D006505 4.3e-07 58.2 70 40.0
Zm00001eb074840 Zea mays HOM05D004980 ORTHO05D006505 5.7e-07 57.8 88 37.5
Zm00001eb375420 Zea mays HOM05D004980 ORTHO05D006505 7.4e-07 57.4 70 40.0
HPP92_015323 Vanilla planifolia HOM05D004980 ORTHO05D006505 1.6e-06 56.2 66 42.4
HPP92_015364 Vanilla planifolia HOM05D004980 ORTHO05D006505 1.6e-06 56.2 66 42.4
SEGI_15101 Sequoiadendron giganteum HOM05D004980 ORTHO05D006505 2.1e-06 55.8 70 40.0
Os02g0804600 Oryza sativa ssp. japonica HOM05D004980 ORTHO05D006505 3.7e-06 55.1 57 40.4


User provided reference genes

Program Settings