Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 7.9e-112 407.1 207 100.0
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 6.5e-98 360.9 211 88.6
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 5.9e-91 337.8 206 85.0
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 5.0e-90 334.7 206 84.5
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 4.3e-86 321.6 206 81.1
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 2.5e-81 305.8 206 78.2
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 1.9e-57 226.5 211 59.7
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 3.6e-56 222.2 192 59.9
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 1.1e-52 210.7 228 52.2
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 5.4e-52 208.4 205 56.6
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 2.0e-51 206.5 176 61.9
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 5.9e-51 204.9 176 61.4
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 1.7e-50 203.4 208 53.4
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 2.3e-50 203.0 185 58.9
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 2.9e-50 202.6 202 55.0
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 5.0e-50 201.8 201 53.7
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 8.6e-50 201.1 179 59.2
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 1.5e-49 200.3 205 55.6
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.9e-49 199.9 201 55.7
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 3.3e-49 199.1 185 56.8
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 5.5e-49 198.4 162 64.2
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 1.2e-48 197.2 182 56.6
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 1.6e-48 196.8 204 52.0
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 2.8e-48 196.1 211 55.0
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 1.0e-47 194.1 177 59.3
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 3.0e-47 192.6 200 55.0
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 2.6e-46 189.5 210 51.9
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 2.6e-46 189.5 183 51.9
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 4.4e-46 188.7 188 53.7
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 5.7e-46 188.3 148 64.2
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 7.5e-46 188.0 183 55.2
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 7.5e-46 188.0 183 55.2
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 7.5e-46 188.0 206 51.5
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 1.3e-45 187.2 178 57.9
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 1.3e-45 187.2 208 51.0
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 1.7e-45 186.8 208 49.5
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 2.2e-45 186.4 205 49.3
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 2.2e-45 186.4 211 51.7
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 3.7e-45 185.7 193 50.3
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 3.7e-45 185.7 201 53.7
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 4.9e-45 185.3 211 51.2
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 6.3e-45 184.9 201 51.7
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 6.3e-45 184.9 179 57.5
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 6.3e-45 184.9 182 53.3
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 1.8e-44 183.3 208 50.5
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 2.4e-44 183.0 188 52.7
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 2.4e-44 183.0 166 58.4
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 2.4e-44 183.0 209 52.2
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 4.1e-44 182.2 208 49.5
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 4.1e-44 182.2 197 50.8
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 5.4e-44 181.8 197 52.3
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 5.4e-44 181.8 206 50.0
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 5.4e-44 181.8 180 59.4
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 9.2e-44 181.0 206 50.0
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 9.2e-44 181.0 179 54.7
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 1.2e-43 180.6 181 51.9
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 2.0e-43 179.9 216 49.1
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 3.5e-43 179.1 179 53.1
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 7.8e-43 177.9 204 48.5
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 1.0e-42 177.6 212 50.5
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 1.0e-42 177.6 208 49.5
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 1.3e-42 177.2 208 50.5
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 1.7e-42 176.8 162 54.9
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 1.7e-42 176.8 207 51.2
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 2.3e-42 176.4 203 48.8
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 2.9e-42 176.0 206 51.9
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 3.8e-42 175.6 179 52.5
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 5.0e-42 175.3 193 51.8
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 5.0e-42 175.3 180 52.2
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 6.6e-42 174.9 195 50.3
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 6.6e-42 174.9 178 53.4
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 1.5e-41 173.7 193 51.8
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 1.5e-41 173.7 182 51.1
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 1.9e-41 173.3 204 48.0
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 9.5e-41 171.0 204 47.1
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 2.1e-40 169.9 183 53.0
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 4.7e-40 168.7 183 51.4
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 1.0e-39 167.5 166 51.2
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 1.8e-39 166.8 179 54.7
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 3.0e-39 166.0 169 52.7
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.0e-39 165.6 169 52.1
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 4.0e-39 165.6 193 49.2
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 5.2e-39 165.2 169 52.1
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 5.2e-39 165.2 201 47.8
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.5e-38 163.7 181 53.6
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.0e-38 163.3 179 53.6
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.4e-38 162.2 193 51.3
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 4.4e-38 162.2 207 47.3
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 1.3e-37 160.6 193 49.7
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 6.4e-37 158.3 156 53.2
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 2.4e-36 156.4 115 67.0
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 1.2e-35 154.1 198 48.0
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.6e-35 153.7 118 65.3
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 2.5e-33 146.4 117 64.1
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 5.6e-33 145.2 207 46.4
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 7.3e-33 144.8 181 47.5
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 1.2e-32 144.1 177 51.4
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 6.2e-32 141.7 183 48.6
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 8.0e-32 141.4 196 45.4
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 2.3e-31 139.8 199 46.2
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 2.3e-31 139.8 138 52.2
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 3.1e-31 139.4 183 48.1
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 4.0e-31 139.0 199 47.7
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 4.0e-31 139.0 167 49.7
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 6.8e-31 138.3 181 48.1
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 2.6e-30 136.3 198 47.0
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 5.8e-30 135.2 190 46.8
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 5.8e-30 135.2 158 49.4
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 9.8e-30 134.4 198 46.5
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 9.8e-30 134.4 198 46.5
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 1.7e-29 133.7 218 43.6
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 2.2e-29 133.3 190 46.3
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 2.2e-29 133.3 192 42.7
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 4.9e-29 132.1 205 40.5
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 6.4e-29 131.7 190 45.8
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.9e-28 130.2 193 45.1
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 3.2e-28 129.4 207 41.1
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 3.2e-28 129.4 115 55.7
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 4.1e-28 129.0 219 39.3
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 7.0e-28 128.3 205 42.0
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.2e-27 127.5 205 42.0
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 2.1e-27 126.7 183 46.4
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 4.6e-27 125.6 179 45.3
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 6.0e-27 125.2 103 63.1
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 7.8e-27 124.8 193 44.0
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 1.3e-26 124.0 181 44.8
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 3.9e-26 122.5 199 41.2
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 1.5e-25 120.6 176 42.6
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 4.3e-25 119.0 155 47.7
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 6.2e-24 115.2 209 37.3
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 5.2e-23 112.1 189 43.4
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 5.2e-23 112.1 189 43.4
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 9.9e-22 107.8 210 41.0
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 9.9e-22 107.8 213 35.7
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 2.2e-21 106.7 210 40.5
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 2.9e-21 106.3 210 40.5
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 7.1e-20 101.7 141 45.4
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 3.9e-18 95.9 187 36.4
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 6.6e-18 95.1 207 33.8
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 7.3e-17 91.7 125 44.0
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 1.1e-15 87.8 205 33.2
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 2.6e-14 83.2 134 38.8
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 2.1e-11 73.6 60 68.3
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.0e-10 71.2 115 40.0
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 1.3e-10 70.9 74 54.1
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 1.9e-09 67.0 52 67.3
Cre07.g331000 Chlamydomonas reinhardtii HOM05D004212 ORTHO05D005128 2.1e-08 63.5 192 32.8
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 2.8e-08 63.2 56 51.8
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 6.2e-08 62.0 56 57.1


User provided reference genes

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