Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 2.9e-208 728.4 390 100.0
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 3.3e-180 635.2 392 90.3
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 4.4e-180 634.8 393 89.8
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.2e-158 563.5 400 80.5
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 3.9e-152 542.0 391 79.5
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 9.3e-114 414.5 404 63.4
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 4.8e-110 402.1 406 62.3
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 5.8e-108 395.2 405 63.5
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 2.4e-101 373.2 408 57.8
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 3.1e-101 372.9 341 64.8
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.9e-101 371.7 411 57.2
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 2.6e-100 369.8 406 60.3
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 4.5e-100 369.0 398 60.3
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 7.6e-100 368.2 351 63.0
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 1.0e-99 367.9 402 58.5
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.7e-99 367.1 404 58.2
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 8.4e-99 364.8 391 58.8
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 2.5e-98 363.2 396 56.8
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 3.2e-98 362.8 422 57.3
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 3.2e-98 362.8 400 58.2
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 9.3e-98 361.3 408 56.9
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 2.3e-96 356.7 417 57.8
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 3.9e-96 355.9 408 58.6
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 9.6e-95 351.3 394 59.1
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 3.7e-94 349.4 408 57.4
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 6.3e-94 348.6 404 58.2
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 6.3e-94 348.6 426 55.2
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 1.1e-93 347.8 405 57.5
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 2.4e-93 346.7 414 56.3
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.1e-93 346.3 404 55.7
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 3.1e-93 346.3 410 55.9
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 2.6e-92 343.2 386 57.8
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 3.4e-92 342.8 400 55.5
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 4.5e-92 342.4 402 55.2
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 1.7e-91 340.5 403 57.8
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 5.0e-91 339.0 419 55.4
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 8.4e-91 338.2 354 59.3
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 8.4e-91 338.2 427 54.6
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 1.1e-90 337.8 430 53.0
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.4e-90 337.4 407 56.8
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 1.9e-90 337.0 412 55.1
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 2.1e-89 333.6 411 54.0
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 2.7e-89 333.2 314 64.0
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 3.5e-89 332.8 395 54.2
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 4.6e-89 332.4 184 91.3
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 4.3e-87 325.9 413 53.5
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 4.8e-86 322.4 416 54.1
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 4.8e-86 322.4 397 54.2
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 3.1e-85 319.7 393 55.0
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 6.9e-85 318.5 405 54.1
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 9.0e-85 318.2 411 52.6
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 4.5e-84 315.8 388 55.2
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 1.3e-83 314.3 407 51.8
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 8.5e-83 311.6 399 53.4
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.1e-82 311.2 409 53.5
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.1e-82 311.2 405 54.6
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 2.1e-81 307.0 427 53.6
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 1.8e-80 303.9 389 50.9
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 2.3e-80 303.5 449 49.2
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 6.7e-80 302.0 448 48.7
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 1.5e-79 300.8 408 52.0
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 3.3e-79 299.7 396 50.0
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.7e-78 297.4 373 52.5
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 3.7e-78 296.2 403 50.4
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.1e-77 294.7 374 52.9
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 1.8e-77 293.9 412 50.2
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.1e-77 293.1 372 53.0
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 3.1e-77 293.1 402 52.5
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 5.9e-76 288.9 355 52.4
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 1.0e-75 288.1 393 51.7
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 3.8e-75 286.2 395 51.4
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.1e-74 284.6 335 54.3
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 2.5e-74 283.5 335 54.3
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 2.5e-74 283.5 404 49.8
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.5e-74 282.3 323 57.9
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 5.5e-74 282.3 395 50.9
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 3.6e-73 279.6 404 49.0
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 2.0e-71 273.9 357 50.4
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 2.6e-71 273.5 405 47.7
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 4.4e-71 272.7 405 47.7
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 3.7e-70 269.6 405 48.1
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 1.8e-69 267.3 367 50.4
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 9.1e-69 265.0 389 49.4
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 2.2e-67 260.4 405 48.4
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 3.2e-66 256.5 392 49.5
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 3.2e-66 256.5 184 85.9
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 5.5e-66 255.8 394 47.0
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 9.4e-66 255.0 400 47.5
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.7e-65 253.4 322 50.9
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.7e-65 253.4 392 48.0
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.0e-64 251.5 392 48.0
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 4.0e-64 249.6 401 45.4
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 2.6e-63 246.9 390 48.7
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 4.4e-63 246.1 385 47.8
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 1.7e-62 244.2 426 45.8
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 4.8e-62 242.7 408 45.6
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 1.4e-61 241.1 409 44.7
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 4.5e-60 236.1 328 49.4
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 4.5e-60 236.1 404 46.8
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 5.9e-60 235.7 400 45.2
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 7.7e-60 235.3 415 41.7
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 2.9e-59 233.4 283 56.2
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 1.0e-56 224.9 267 59.9
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 1.4e-56 224.6 283 51.9
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 4.0e-56 223.0 379 46.2
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 2.0e-55 220.7 383 46.5
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.0e-55 220.7 438 40.0
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 5.7e-55 219.2 374 47.1
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 9.8e-55 218.4 382 47.1
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 9.8e-55 218.4 372 46.0
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 1.3e-54 218.0 291 52.2
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 2.8e-54 216.9 382 45.8
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 2.8e-54 216.9 382 45.8
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 6.3e-54 215.7 322 49.7
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 2.4e-53 213.8 372 46.0
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 5.4e-53 212.6 391 44.8
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 5.4e-53 212.6 382 45.0
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 9.1e-53 211.8 331 47.7
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.2e-52 211.5 390 44.6
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 8.0e-49 198.7 399 43.9
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 8.8e-48 195.3 220 56.4
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.0e-47 194.1 281 51.2
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.0e-47 194.1 281 51.2
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 8.3e-46 188.7 303 45.5
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 6.8e-40 169.1 388 39.2
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 1.2e-39 168.3 292 41.1
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 1.1e-37 161.8 291 40.5
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 1.7e-35 154.5 191 55.0
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 5.6e-34 149.4 233 49.8
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.8e-33 147.1 125 63.2
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 2.2e-30 137.5 118 69.5
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 3.2e-29 133.7 106 69.8
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 7.0e-29 132.5 359 37.0
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-23 115.2 214 44.4
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-23 115.2 214 44.4
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 1.9e-21 107.8 252 36.1
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.4e-21 107.5 292 34.9
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.2e-21 107.1 189 45.0
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 2.9e-14 84.0 64 73.4
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 1.0e-11 75.5 116 50.9
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 3.9e-11 73.6 167 34.7
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-10 72.0 217 35.0
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.5e-10 70.9 217 35.0
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.5e-10 70.9 217 34.6
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 2.5e-10 70.9 163 39.3
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.3e-10 70.5 217 34.6
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 3.3e-10 70.5 74 62.2
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.3e-10 70.1 217 34.6
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.3e-10 70.1 217 34.6
CAN.G696.6 Capsicum annuum HOM05D005219 ORTHO05D001154 1.7e-06 58.2 42 78.6


User provided reference genes

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