Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 4.8e-177 624.4 316 100.0
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 4.3e-162 574.7 310 93.2
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 2.9e-158 562.0 311 92.6
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 2.1e-156 555.8 311 92.0
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 4.7e-156 554.7 316 88.0
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 7.4e-154 547.4 310 88.1
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.3e-153 546.6 318 87.1
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.8e-139 499.6 293 83.6
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 4.1e-128 461.8 316 75.6
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 5.4e-128 461.5 322 74.8
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 1.3e-126 456.8 314 73.9
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 1.3e-126 456.8 271 82.3
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 4.2e-125 451.8 312 73.4
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 5.5e-125 451.4 285 79.6
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 1.2e-124 450.3 288 77.8
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 4.7e-124 448.4 316 72.8
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 6.1e-124 448.0 271 81.2
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 8.0e-124 447.6 273 79.9
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 1.0e-123 447.2 267 83.5
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 2.3e-123 446.0 316 70.9
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 5.2e-123 444.9 341 70.4
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 6.8e-123 444.5 335 70.7
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 6.8e-123 444.5 269 80.3
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 6.8e-123 444.5 269 80.3
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 8.9e-123 444.1 314 72.6
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 1.5e-122 443.4 271 80.4
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 1.5e-122 443.4 270 81.9
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 1.5e-122 443.4 276 79.7
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 3.4e-122 442.2 269 81.8
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 3.4e-122 442.2 271 79.3
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 7.5e-122 441.0 287 76.7
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 1.3e-121 440.3 315 71.7
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 1.3e-121 440.3 269 80.3
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 2.8e-121 439.1 316 71.8
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 6.3e-121 438.0 259 83.8
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.1e-120 437.2 268 79.9
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 1.1e-120 437.2 271 78.6
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 1.4e-120 436.8 271 78.6
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 2.4e-120 436.0 268 80.6
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 9.2e-120 434.1 265 80.8
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 9.2e-120 434.1 262 82.1
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 1.2e-119 433.7 295 74.9
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 1.6e-119 433.3 263 82.9
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 2.7e-119 432.6 267 78.7
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 2.7e-119 432.6 264 81.1
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 5.9e-119 431.4 283 78.4
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 5.9e-119 431.4 270 79.6
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 7.8e-119 431.0 308 72.4
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 7.8e-119 431.0 288 75.3
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 1.0e-118 430.6 283 78.4
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 1.0e-118 430.6 282 78.4
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 1.0e-118 430.6 270 80.4
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 1.7e-118 429.9 308 72.1
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 2.3e-118 429.5 267 77.2
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.3e-118 429.5 323 68.7
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 2.9e-118 429.1 261 81.2
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 3.9e-118 428.7 271 79.3
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 3.9e-118 428.7 285 76.5
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 3.9e-118 428.7 278 78.4
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 6.6e-118 427.9 269 79.6
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 6.6e-118 427.9 280 76.8
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 8.6e-118 427.6 280 77.5
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 1.1e-117 427.2 266 80.1
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.5e-117 426.8 278 76.3
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 1.9e-117 426.4 266 80.1
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 1.9e-117 426.4 267 77.2
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 2.5e-117 426.0 284 76.1
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 4.3e-117 425.2 269 79.6
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 4.3e-117 425.2 258 81.4
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 7.3e-117 424.5 267 79.8
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 9.5e-117 424.1 343 64.7
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 2.8e-116 422.5 266 78.9
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 2.8e-116 422.5 275 76.0
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 4.7e-116 421.8 274 77.0
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 4.7e-116 421.8 266 78.6
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 6.1e-116 421.4 268 79.1
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 1.0e-115 420.6 267 79.4
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 1.8e-115 419.9 267 79.0
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 1.8e-115 419.9 267 79.0
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 3.1e-115 419.1 269 78.4
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 4.0e-115 418.7 264 79.2
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 5.2e-115 418.3 295 73.2
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.2e-114 417.2 304 69.7
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.6e-114 416.0 303 69.6
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 3.4e-114 415.6 273 74.4
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 5.8e-114 414.8 270 77.4
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 5.8e-114 414.8 265 76.2
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 7.5e-114 414.5 304 69.4
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 2.2e-113 412.9 250 81.6
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 3.5e-111 405.6 267 74.5
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 4.6e-111 405.2 272 75.7
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 3.9e-110 402.1 264 76.9
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 1.1e-107 394.0 299 67.2
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 1.5e-106 390.2 262 74.0
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 2.9e-105 386.0 266 74.1
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.1e-104 384.0 383 56.1
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 1.9e-104 383.3 249 77.9
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 3.2e-104 382.5 250 77.6
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 1.6e-103 380.2 224 82.1
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.3e-102 377.1 234 79.9
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 2.3e-102 376.3 266 71.4
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 2.5e-101 372.9 273 70.7
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 9.5e-101 370.9 262 69.5
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 4.7e-100 368.6 260 71.9
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 8.1e-100 367.9 262 69.5
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 2.3e-99 366.3 316 63.3
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 2.2e-97 359.8 214 81.3
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 3.7e-97 359.0 264 68.6
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 4.1e-96 355.5 261 70.9
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 5.4e-96 355.1 262 69.1
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 4.7e-92 342.0 258 65.5
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.1e-91 340.9 251 71.3
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 7.6e-90 334.7 205 79.5
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 9.9e-90 334.3 256 66.4
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 1.2e-87 327.4 266 66.2
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 3.0e-86 322.8 264 60.6
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 6.6e-86 321.6 193 82.4
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.9e-85 320.1 267 61.0
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 5.3e-83 312.0 289 59.5
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 2.2e-81 306.6 174 86.8
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 2.9e-81 306.2 246 67.9
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 4.6e-79 298.9 242 65.3
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 7.3e-77 291.6 274 58.0
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 6.2e-76 288.5 171 83.0
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.4e-72 276.6 183 73.2
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.9e-69 266.9 183 70.5
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.4e-64 250.8 182 73.1
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 7.9e-63 245.0 154 77.3
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 2.5e-61 240.0 170 70.6
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 9.6e-61 238.0 183 68.9
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 1.5e-58 230.7 138 81.2
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 3.8e-57 226.1 260 46.2
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 1.2e-50 204.5 168 66.1
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 2.2e-49 200.3 150 68.7
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 2.9e-49 199.9 121 80.2
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 2.9e-49 199.9 121 80.2
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.2e-47 194.5 121 77.7
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.2e-47 194.5 121 77.7
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.4e-46 191.0 119 78.2
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 8.5e-41 171.8 307 38.1
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 3.9e-38 162.9 108 74.1
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 7.4e-37 158.7 143 58.0
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 2.2e-36 157.1 117 65.0
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 7.7e-34 148.7 125 54.4
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 2.9e-33 146.7 131 63.4
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 7.2e-32 142.1 173 46.8
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 8.0e-31 138.7 112 61.6
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 1.5e-29 134.4 194 41.2
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 3.3e-29 133.3 97 66.0
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 1.7e-28 131.0 111 61.3
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 5.3e-27 125.9 77 83.1
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 8.0e-23 112.1 70 80.0
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.8e-22 110.9 91 65.9
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 3.4e-21 106.7 71 71.8
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.4e-19 101.3 70 67.1
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 5.5e-16 89.4 57 73.7
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 5.5e-16 89.4 57 73.7
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.2e-15 88.2 70 64.3
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 1.2e-15 88.2 197 36.5
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 7.5e-13 79.0 46 80.4
SEGI_21930 Sequoiadendron giganteum HOM05D004449 ORTHO05D386504 1.8e-06 57.8 63 50.8


User provided reference genes

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