Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G694.45 Capsicum annuum HOM05D002530 ORTHO05D002802 4.8e-196 688.0 433 100.0
CAN.G1891.13 Capsicum annuum HOM05D002530 ORTHO05D002802 3.3e-51 206.8 177 70.1
CAN.G4601.1 Capsicum annuum HOM05D002530 ORTHO05D002802 3.3e-51 206.8 177 70.1
PGSC0003DMG400008528 Solanum tuberosum HOM05D002530 ORTHO05D002802 1.9e-46 191.0 176 64.2
CAN.G207.1 Capsicum annuum HOM05D002530 ORTHO05D002802 5.4e-46 189.5 248 46.8
Peaxi162Scf00883g00321 Petunia axillaris HOM05D002530 ORTHO05D002802 4.7e-42 176.4 177 61.0
Nitab4.5_0000064g0010 Nicotiana tabacum HOM05D002530 ORTHO05D002802 1.4e-38 164.9 168 60.7
CAN.G1891.12 Capsicum annuum HOM05D002530 ORTHO05D115266 3.2e-38 163.7 120 74.2
TAR633G2324 Trochodendron aralioides HOM05D002530 ORTHO05D002802 3.4e-32 143.7 176 48.9
Hma1.2p1_1156F.1_g262320 Hydrangea macrophylla HOM05D002530 ORTHO05D002802 3.2e-30 137.1 176 46.0
Ciclev10018782m.g Citrus clementina HOM05D002530 ORTHO05D002802 7.1e-30 136.0 176 47.7
CSS0004772 Camellia sinensis var. sinensis HOM05D002530 ORTHO05D002802 9.2e-30 135.6 183 47.0
CSS0008293 Camellia sinensis var. sinensis HOM05D002530 ORTHO05D002802 9.2e-30 135.6 183 47.0
Actinidia11439 Actinidia chinensis HOM05D002530 ORTHO05D002802 1.6e-29 134.8 182 46.2
Rhsim02G0085600 Rhododendron simsii HOM05D002530 ORTHO05D002802 3.5e-29 133.7 175 46.9
Lj6A232T33 Lonicera japonica HOM05D002530 ORTHO05D002802 6.0e-29 132.9 175 47.4
Lj6C228T6 Lonicera japonica HOM05D002530 ORTHO05D002802 7.8e-29 132.5 181 46.4
Dinv33216 Davidia involucrata HOM05D002530 ORTHO05D002802 1.0e-28 132.1 175 46.3
Migut.N03055 Erythranthe guttata HOM05D002530 ORTHO05D002802 1.3e-28 131.7 175 47.4
Migut.O00693 Erythranthe guttata HOM05D002530 ORTHO05D002802 1.3e-28 131.7 175 47.4
Nitab4.5_0002913g0020 Nicotiana tabacum HOM05D002530 ORTHO05D002802 1.3e-28 131.7 109 68.8
SalBow6G6351 Salvia bowleyana HOM05D002530 ORTHO05D002802 2.3e-28 131.0 180 47.8
CSS0022709 Camellia sinensis var. sinensis HOM05D002530 ORTHO05D002802 1.5e-27 128.3 183 44.3
Atru.chr4.1470 Acer truncatum HOM05D002530 ORTHO05D002802 1.9e-27 127.9 177 45.8
Atru.chr4.1497 Acer truncatum HOM05D002530 ORTHO05D002802 1.9e-27 127.9 177 45.8
Thecc.04G163700 Theobroma cacao HOM05D002530 ORTHO05D002802 4.3e-27 126.7 176 44.3
Aqoxy5G00355 Aquilegia oxysepala HOM05D002530 ORTHO05D002802 7.3e-27 125.9 178 45.5
vmacro15696 Vaccinium macrocarpon HOM05D002530 ORTHO05D002802 1.6e-26 124.8 175 44.6
Potri.019G097000 Populus trichocarpa HOM05D002530 ORTHO05D002802 2.8e-26 124.0 181 43.1
Duzib268G0824 Durio zibethinus HOM05D002530 ORTHO05D002802 3.6e-26 123.6 176 43.8
GSVIVG01038181001 Vitis vinifera HOM05D002530 ORTHO05D002802 8.1e-26 122.5 176 42.0
FAN12G0122 Fragaria x ananassa HOM05D002530 ORTHO05D002802 1.4e-25 121.7 175 44.6
FAN12G0621 Fragaria x ananassa HOM05D002530 ORTHO05D002802 1.4e-25 121.7 175 44.6
MBI07_g11510_MAGBIO Magnolia biondii HOM05D002530 ORTHO05D002802 1.4e-25 121.7 178 43.3
ECA248G1279 Erigeron canadensis HOM05D002530 ORTHO05D002802 1.8e-25 121.3 176 44.3
Manes.02G213500 Manihot esculenta HOM05D002530 ORTHO05D002802 1.8e-25 121.3 174 44.3
Gohir.A02G007700 Gossypium hirsutum HOM05D002530 ORTHO05D002802 3.1e-25 120.6 176 43.8
Gorai.005G009000 Gossypium raimondii HOM05D002530 ORTHO05D002802 3.1e-25 120.6 176 43.8
FvH4_4g10120 Fragaria vesca HOM05D002530 ORTHO05D002802 4.0e-25 120.2 175 44.0
Cc03_g14450 Coffea canephora HOM05D002530 ORTHO05D002802 5.2e-25 119.8 107 61.7
HanXRQChr01g0023321 Helianthus annuus HOM05D002530 ORTHO05D002802 5.2e-25 119.8 178 43.8
RcHm_v2.0_Chr4g0405621 Rosa chinensis HOM05D002530 ORTHO05D002802 5.2e-25 119.8 175 44.0
Gohir.D02G007500 Gossypium hirsutum HOM05D002530 ORTHO05D002802 6.8e-25 119.4 176 43.8
DCAR_028970 Daucus carota HOM05D002530 ORTHO05D002802 2.0e-24 117.9 120 55.8
PSO782G3741 Papaver somniferum HOM05D002530 ORTHO05D002802 2.0e-24 117.9 172 44.2
MD00G1064100 Malus domestica HOM05D002530 ORTHO05D002802 3.4e-24 117.1 175 42.3
Prupe.1G102500 Prunus persica HOM05D002530 ORTHO05D002802 5.8e-24 116.3 175 42.9
Lsat_1_v5_gn_1_74180 Lactuca sativa HOM05D002530 ORTHO05D002802 7.6e-24 115.9 178 44.4
FAN17G1116 Fragaria x ananassa HOM05D002530 ORTHO05D002802 9.9e-24 115.5 175 43.4
Oeu024468.1 Olea europaea HOM05D002530 ORTHO05D002802 9.9e-24 115.5 120 55.0
PSO063G5596 Papaver somniferum HOM05D002530 ORTHO05D002802 9.9e-24 115.5 172 43.6
TWI38G0533 Tripterygium wilfordii HOM05D002530 ORTHO05D002802 1.3e-23 115.2 172 45.3
CANSAT56G0720 Cannabis sativa HOM05D002530 ORTHO05D002802 1.9e-22 111.3 129 51.2
ClCG11G013480 Citrullus lanatus HOM05D002530 ORTHO05D002802 1.9e-22 111.3 119 55.5
MELO3C011849.2 Cucumis melo HOM05D002530 ORTHO05D002802 2.4e-22 110.9 119 54.6
PGR142G2077 Punica granatum HOM05D002530 ORTHO05D002802 2.4e-22 110.9 119 56.3
CiPaw.01G169300 Carya illinoinensis HOM05D002530 ORTHO05D002802 5.4e-22 109.8 120 54.2
CsaV3_5G030110 Cucumis sativus L. HOM05D002530 ORTHO05D002802 9.3e-22 109.0 119 53.8
Potri.013G128100 Populus trichocarpa HOM05D002530 ORTHO05D002802 9.3e-22 109.0 176 41.5
QL10p057078 Quercus lobata HOM05D002530 ORTHO05D002802 1.2e-21 108.6 120 54.2
Sed0015965 Sechium edule HOM05D002530 ORTHO05D002802 1.6e-21 108.2 177 42.4
Haze_00855 Corylus avellana HOM05D002530 ORTHO05D002802 2.1e-21 107.8 120 55.8
Zm00001eb210900 Zea mays HOM05D002530 ORTHO05D002802 3.5e-21 107.1 120 50.0
arahy.Tifrunner.gnm1.ann1.PUPF9M Arachis hypogaea HOM05D002530 ORTHO05D002802 1.1e-19 102.1 178 39.9
Eucgr.H00287 Eucalyptus grandis HOM05D002530 ORTHO05D002802 1.5e-19 101.7 118 53.4
Sabra13G0107000 Salix brachista HOM05D002530 ORTHO05D002802 1.5e-19 101.7 176 38.6
arahy.Tifrunner.gnm1.ann1.XB6ANN Arachis hypogaea HOM05D002530 ORTHO05D002802 9.6e-19 99.0 177 39.0
RhsimUnG0015100 Rhododendron simsii HOM05D002530 ORTHO05D002802 2.8e-18 97.4 133 47.4
ATR0743G261 Amborella trichopoda HOM05D002530 ORTHO05D002802 3.6e-18 97.1 122 49.2
Sabra19G0108700 Salix brachista HOM05D002530 ORTHO05D002802 4.8e-18 96.7 130 48.5
Lj1g0001992 Lotus japonicus HOM05D002530 ORTHO05D002802 1.1e-17 95.5 118 48.3
Os03g0843600 Oryza sativa ssp. japonica HOM05D002530 ORTHO05D002802 1.1e-17 95.5 119 49.6
Phvul.009G263100 Phaseolus vulgaris HOM05D002530 ORTHO05D002802 1.1e-17 95.5 118 49.2
HPP92_001253 Vanilla planifolia HOM05D002530 ORTHO05D002802 1.1e-17 95.5 120 49.2
HPP92_001270 Vanilla planifolia HOM05D002530 ORTHO05D002802 1.1e-17 95.5 120 49.2
VMungo1309G0412 Vigna mungo HOM05D002530 ORTHO05D002802 1.1e-17 95.5 177 37.3
Glyma.19G263500 Glycine max HOM05D002530 ORTHO05D002802 2.4e-17 94.4 118 49.2
Lalb_Chr15g0076801 Lupinus albus HOM05D002530 ORTHO05D002802 4.0e-17 93.6 118 48.3
HPP92_003582 Vanilla planifolia HOM05D002530 ORTHO05D002802 9.0e-17 92.4 119 50.4
Psat3g000200 Pisum sativum HOM05D002530 ORTHO05D002802 1.3e-15 88.6 118 44.9
Medtr7g117580 Medicago truncatula HOM05D002530 ORTHO05D002802 1.4e-14 85.1 120 41.7
Cpa.g.sc9.383 Carica papaya HOM05D002530 ORTHO05D002802 2.1e-13 81.3 44 90.9
SEGI_10081 Sequoiadendron giganteum HOM05D002530 ORTHO05D002802 1.5e-11 75.1 121 39.7
PSO170G2866 Papaver somniferum HOM05D002530 ORTHO05D002802 1.9e-11 74.7 124 38.7
Ciclev10000208m.g Citrus clementina HOM05D002530 ORTHO05D002802 9.6e-11 72.4 131 38.2
ATR0584G164 Amborella trichopoda HOM05D002530 ORTHO05D002802 1.3e-10 72.0 118 40.7
Manes.07G023400 Manihot esculenta HOM05D002530 ORTHO05D002802 1.3e-10 72.0 124 38.7
GSVIVG01023259001 Vitis vinifera HOM05D002530 ORTHO05D002802 1.3e-10 72.0 124 39.5
Atru.chr6.793 Acer truncatum HOM05D002530 ORTHO05D002802 2.1e-10 71.2 137 38.0
VMungo0540G0429 Vigna mungo HOM05D002530 ORTHO05D002802 2.1e-10 71.2 122 41.8
Ca_00044_v3 Cicer arietinum L. HOM05D002530 ORTHO05D002802 3.6e-10 70.5 125 40.8
Medtr2g005870 Medicago truncatula HOM05D002530 ORTHO05D002802 3.6e-10 70.5 125 40.0
AagrBONN_evm.TU.Sc2ySwM_368.2877 Anthoceros agrestis HOM05D002530 ORTHO05D002802 4.8e-10 70.1 116 39.7
Duzib052G0897 Durio zibethinus HOM05D002530 ORTHO05D002802 6.2e-10 69.7 124 37.9
TPR.G2132 Trifolium pratense HOM05D002530 ORTHO05D002802 6.2e-10 69.7 125 39.2
TAR628G1217 Trochodendron aralioides HOM05D002530 ORTHO05D002802 6.2e-10 69.7 121 39.7
Glyma.16G003300 Glycine max HOM05D002530 ORTHO05D002802 1.1e-09 68.9 125 38.4
Glyma.12G167300 Glycine max HOM05D002530 ORTHO05D002802 1.4e-09 68.6 125 40.0
Prupe.1G577700 Prunus persica HOM05D002530 ORTHO05D002802 1.4e-09 68.6 124 37.1
arahy.Tifrunner.gnm1.ann1.8IGA7D Arachis hypogaea HOM05D002530 ORTHO05D002802 2.4e-09 67.8 125 38.4
arahy.Tifrunner.gnm1.ann1.ARQ4UL Arachis hypogaea HOM05D002530 ORTHO05D002802 2.4e-09 67.8 125 38.4
Duzib132G0844 Durio zibethinus HOM05D002530 ORTHO05D002802 3.1e-09 67.4 124 37.9
COL.COLO4_17733 Corchorus olitorius HOM05D002530 ORTHO05D002802 4.0e-09 67.0 124 37.9
Phvul.006G218700 Phaseolus vulgaris HOM05D002530 ORTHO05D002802 4.0e-09 67.0 122 40.2
Psat1g222280 Pisum sativum HOM05D002530 ORTHO05D002802 4.0e-09 67.0 124 37.1
Cpa.g.sc113.52 Carica papaya HOM05D002530 ORTHO05D002802 5.3e-09 66.6 123 37.4
Potri.003G008800 Populus trichocarpa HOM05D002530 ORTHO05D002802 5.3e-09 66.6 124 37.1
Potri.004G223400 Populus trichocarpa HOM05D002530 ORTHO05D002802 5.3e-09 66.6 124 37.9
ECA236G1516 Erigeron canadensis HOM05D002530 ORTHO05D002802 6.9e-09 66.2 121 38.8
Thecc.02G019500 Theobroma cacao HOM05D002530 ORTHO05D002802 9.0e-09 65.9 124 37.1
HPP92_017233 Vanilla planifolia HOM05D002530 ORTHO05D002802 9.0e-09 65.9 124 37.1
Actinidia06474 Actinidia chinensis HOM05D002530 ORTHO05D002802 1.2e-08 65.5 125 38.4
Lalb_Chr18g0061051 Lupinus albus HOM05D002530 ORTHO05D002802 1.2e-08 65.5 121 37.2
Gohir.A03G215200 Gossypium hirsutum HOM05D002530 ORTHO05D002802 1.5e-08 65.1 124 37.9
Gohir.D02G236700 Gossypium hirsutum HOM05D002530 ORTHO05D002802 1.5e-08 65.1 124 37.9
Gorai.005G265200 Gossypium raimondii HOM05D002530 ORTHO05D002802 1.5e-08 65.1 124 37.9
HanXRQChr06g0181371 Helianthus annuus HOM05D002530 ORTHO05D002802 1.5e-08 65.1 121 37.2
Sabra03G0004400 Salix brachista HOM05D002530 ORTHO05D002802 1.5e-08 65.1 124 36.3
TWI23G0330 Tripterygium wilfordii HOM05D002530 ORTHO05D002802 1.5e-08 65.1 121 36.4
FAN09G0211 Fragaria x ananassa HOM05D002530 ORTHO05D002802 2.0e-08 64.7 136 35.3
MELO3C011822.2 Cucumis melo HOM05D002530 ORTHO05D002802 2.6e-08 64.3 124 35.5
CsaV3_5G029810 Cucumis sativus L. HOM05D002530 ORTHO05D002802 2.6e-08 64.3 124 35.5
Lj6g0022277 Lotus japonicus HOM05D002530 ORTHO05D002802 2.6e-08 64.3 122 37.7
Aqoxy6G00138 Aquilegia oxysepala HOM05D002530 ORTHO05D002802 3.4e-08 63.9 110 37.3
CANSAT54G0268 Cannabis sativa HOM05D002530 ORTHO05D002802 3.4e-08 63.9 138 34.8
Migut.B00779 Erythranthe guttata HOM05D002530 ORTHO05D002802 3.4e-08 63.9 126 36.5
FAN02G4569 Fragaria x ananassa HOM05D002530 ORTHO05D002802 3.4e-08 63.9 135 35.6
EL10Ac6g14174 Beta vulgaris HOM05D002530 ORTHO05D002802 4.5e-08 63.5 132 35.6
ClCG11G013290 Citrullus lanatus HOM05D002530 ORTHO05D002802 4.5e-08 63.5 128 34.4
DCAR_006675 Daucus carota HOM05D002530 ORTHO05D002802 4.5e-08 63.5 125 36.8
FvH4_6g26000 Fragaria vesca HOM05D002530 ORTHO05D002802 4.5e-08 63.5 136 35.3
SGA_v2.0_scaffold304G47909 Striga asiatica HOM05D002530 ORTHO05D002802 4.5e-08 63.5 122 37.7
QL02p100278 Quercus lobata HOM05D002530 ORTHO05D002802 5.8e-08 63.2 124 34.7
Solyc03g059140.4 Solanum lycopersicum HOM05D002530 ORTHO05D002802 5.8e-08 63.2 67 52.2
COL.COLO4_26748 Corchorus olitorius HOM05D002530 ORTHO05D002802 7.6e-08 62.8 124 36.3
QL02p100314 Quercus lobata HOM05D002530 ORTHO05D002802 7.6e-08 62.8 124 34.7
Sc07g0004560 Simmondsia chinensis HOM05D002530 ORTHO05D002802 7.6e-08 62.8 121 34.7
vmacro19867 Vaccinium macrocarpon HOM05D002530 ORTHO05D002802 9.9e-08 62.4 125 36.0
PGR142G2696 Punica granatum HOM05D002530 ORTHO05D002802 1.3e-07 62.0 121 34.7
Sed0015896 Sechium edule HOM05D002530 ORTHO05D002802 1.3e-07 62.0 128 34.4
CSS0005551 Camellia sinensis var. sinensis HOM05D002530 ORTHO05D002802 1.7e-07 61.6 121 36.4
CSS0048271 Camellia sinensis var. sinensis HOM05D002530 ORTHO05D002802 1.7e-07 61.6 121 36.4
Nn5g27864 Nelumbo nucifera HOM05D002530 ORTHO05D002802 1.7e-07 61.6 122 35.2
Os01g0870100 Oryza sativa ssp. japonica HOM05D002530 ORTHO05D002802 1.7e-07 61.6 115 34.8
Actinidia26167 Actinidia chinensis HOM05D002530 ORTHO05D002802 2.2e-07 61.2 125 36.8
Lsat_1_v5_gn_7_76001 Lactuca sativa HOM05D002530 ORTHO05D002802 2.2e-07 61.2 121 36.4
Peaxi162Scf00002g02318 Petunia axillaris HOM05D002530 ORTHO05D002802 2.2e-07 61.2 121 35.5
TWI14G0172 Tripterygium wilfordii HOM05D002530 ORTHO05D002802 2.2e-07 61.2 121 33.9
BcaB05g24061 Brassica carinata HOM05D002530 ORTHO05D002802 2.9e-07 60.8 130 33.1
Haze_10049 Corylus avellana HOM05D002530 ORTHO05D002802 2.9e-07 60.8 126 36.5
Eucgr.I02760 Eucalyptus grandis HOM05D002530 ORTHO05D002802 2.9e-07 60.8 121 36.4
RcHm_v2.0_Chr7g0220721 Rosa chinensis HOM05D002530 ORTHO05D002802 2.9e-07 60.8 135 34.8
Rhsim05G0120400 Rhododendron simsii HOM05D002530 ORTHO05D002802 3.8e-07 60.5 125 35.2
CAN.G196.3 Capsicum annuum HOM05D002530 ORTHO05D002802 4.9e-07 60.1 126 34.9
Dinv19402 Davidia involucrata HOM05D002530 ORTHO05D002802 4.9e-07 60.1 121 36.4
Oeu045925.1 Olea europaea HOM05D002530 ORTHO05D002802 4.9e-07 60.1 121 35.5
Zm00001eb146490 Zea mays HOM05D002530 ORTHO05D002802 4.9e-07 60.1 116 35.3
CARHR258750 Cardamine hirsuta HOM05D002530 ORTHO05D002802 6.4e-07 59.7 120 36.7
Mapoly0173s0003 Marchantia polymorpha HOM05D002530 ORTHO05D002802 6.4e-07 59.7 123 33.3
A02p12850 Brassica napus HOM05D002530 ORTHO05D002802 8.4e-07 59.3 135 32.6
BraA02t06341Z Brassica rapa HOM05D002530 ORTHO05D002802 8.4e-07 59.3 135 32.6
SMO347G0173 Selaginella moellendorffii HOM05D002530 ORTHO05D002802 8.4e-07 59.3 117 36.8
Cc02_g23070 Coffea canephora HOM05D002530 ORTHO05D002802 1.1e-06 58.9 118 36.4
MD08G1240900 Malus domestica HOM05D002530 ORTHO05D002802 1.1e-06 58.9 124 34.7
BcaC03g14657 Brassica carinata HOM05D002530 ORTHO05D002802 1.4e-06 58.5 136 31.6
C02p20900 Brassica napus HOM05D002530 ORTHO05D002802 1.4e-06 58.5 136 31.6
BolC2t08233H Brassica oleracea HOM05D002530 ORTHO05D002802 1.4e-06 58.5 136 31.6
Hund12928 Selenicereus undatus HOM05D002530 ORTHO05D002802 1.4e-06 58.5 121 33.9
AL8G23930 Arabidopsis lyrata HOM05D002530 ORTHO05D002802 1.9e-06 58.2 130 33.1
Lj5A262T66 Lonicera japonica HOM05D002530 ORTHO05D002802 1.9e-06 58.2 122 35.2
Solyc10g044900.3 Solanum lycopersicum HOM05D002530 ORTHO05D002802 1.9e-06 58.2 124 33.9
Sopen10g013890 Solanum pennellii HOM05D002530 ORTHO05D002802 1.9e-06 58.2 124 33.9
AT5G49960 Arabidopsis thaliana HOM05D002530 ORTHO05D002802 2.4e-06 57.8 133 32.3
Carub.0008s0986 Capsella rubella HOM05D002530 ORTHO05D002802 2.4e-06 57.8 137 32.8
PGSC0003DMG400015945 Solanum tuberosum HOM05D002530 ORTHO05D002802 2.4e-06 57.8 124 34.7
CBR_g45484 Chara braunii HOM05D002530 ORTHO05D002802 3.2e-06 57.4 128 31.2
Nitab4.5_0002550g0020 Nicotiana tabacum HOM05D002530 ORTHO05D002802 4.2e-06 57.0 124 35.5
THA.LOC104805001 Tarenaya hassleriana HOM05D002530 ORTHO05D002802 5.5e-06 56.6 133 30.8
Nitab4.5_0000667g0080 Nicotiana tabacum HOM05D002530 ORTHO05D002802 7.1e-06 56.2 124 34.7
Sp6g11690 Schrenkiella parvula HOM05D002530 ORTHO05D002802 7.1e-06 56.2 129 32.6
SMO351G0438 Selaginella moellendorffii HOM05D002530 ORTHO05D002802 7.1e-06 56.2 125 30.4


User provided reference genes

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