Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G694.18 Capsicum annuum HOM05D006824 ORTHO05D008779 1.7e-151 539.3 266 100.0
PGSC0003DMG400023472 Solanum tuberosum HOM05D006824 ORTHO05D008779 1.5e-126 456.4 268 85.8
Sopen05g034220 Solanum pennellii HOM05D006824 ORTHO05D008779 1.2e-117 426.8 244 86.9
Nitab4.5_0005183g0030 Nicotiana tabacum HOM05D006824 ORTHO05D008779 4.4e-115 418.3 266 77.8
Lj8A196G47 Lonicera japonica HOM05D006824 ORTHO05D008779 1.1e-94 350.5 214 75.2
Dinv04348 Davidia involucrata HOM05D006824 ORTHO05D008779 2.8e-93 345.9 256 66.8
GSVIVG01019144001 Vitis vinifera HOM05D006824 ORTHO05D008779 3.6e-93 345.5 196 79.1
Oeu010150.1 Olea europaea HOM05D006824 ORTHO05D008779 1.3e-90 337.0 258 65.9
Cc09_g03430 Coffea canephora HOM05D006824 ORTHO05D008779 2.9e-90 335.9 245 68.2
Lsat_1_v5_gn_9_48761 Lactuca sativa HOM05D006824 ORTHO05D008779 4.9e-90 335.1 246 65.9
CSS0012922 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 1.4e-89 333.6 200 74.5
CSS0029100 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 1.4e-89 333.6 200 74.5
Haze_04530 Corylus avellana HOM05D006824 ORTHO05D008779 5.4e-89 331.6 209 71.8
HanXRQChr11g0323941 Helianthus annuus HOM05D006824 ORTHO05D008779 7.0e-89 331.3 258 60.9
Actinidia38928 Actinidia chinensis HOM05D006824 ORTHO05D008779 9.2e-89 330.9 200 74.0
Rhsim03G0265800 Rhododendron simsii HOM05D006824 ORTHO05D008779 9.2e-89 330.9 257 61.5
ECA232G2571 Erigeron canadensis HOM05D006824 ORTHO05D008779 1.2e-88 330.5 226 66.8
Thecc.05G206500 Theobroma cacao HOM05D006824 ORTHO05D008779 2.0e-88 329.7 207 71.5
TPR.G28449 Trifolium pratense HOM05D006824 ORTHO05D008779 2.0e-88 329.7 212 71.2
RcHm_v2.0_Chr3g0448181 Rosa chinensis HOM05D006824 ORTHO05D008779 2.7e-88 329.3 224 69.2
AUR62000332 Chenopodium quinoa HOM05D006824 ORTHO05D008779 3.5e-88 328.9 249 63.5
Phvul.008G055700 Phaseolus vulgaris HOM05D006824 ORTHO05D008779 4.6e-88 328.6 247 62.8
AUR62006674 Chenopodium quinoa HOM05D006824 ORTHO05D008779 7.8e-88 327.8 260 63.5
Lalb_Chr19g0126751 Lupinus albus HOM05D006824 ORTHO05D008779 1.7e-87 326.6 208 70.2
AL2G41760 Arabidopsis lyrata HOM05D006824 ORTHO05D008779 6.6e-87 324.7 212 72.6
CANSAT54G2581 Cannabis sativa HOM05D006824 ORTHO05D008779 6.6e-87 324.7 205 72.2
TAR362G0347 Trochodendron aralioides HOM05D006824 ORTHO05D008779 8.6e-87 324.3 241 63.9
Potri.010G143000 Populus trichocarpa HOM05D006824 ORTHO05D008779 1.1e-86 323.9 203 70.9
Prupe.6G359400 Prunus persica HOM05D006824 ORTHO05D008779 1.5e-86 323.6 230 65.2
Duzib128G1599 Durio zibethinus HOM05D006824 ORTHO05D008779 1.9e-86 323.2 207 68.6
Atru.chr12.2132 Acer truncatum HOM05D006824 ORTHO05D008779 2.5e-86 322.8 201 71.1
FAN05G0802 Fragaria x ananassa HOM05D006824 ORTHO05D008779 2.5e-86 322.8 216 70.4
C06p28710 Brassica napus HOM05D006824 ORTHO05D008779 3.3e-86 322.4 206 71.8
Glyma.18G240500 Glycine max HOM05D006824 ORTHO05D008779 3.3e-86 322.4 247 62.3
vmacro06000 Vaccinium macrocarpon HOM05D006824 ORTHO05D008779 3.3e-86 322.4 261 57.5
VMungo1383G3541 Vigna mungo HOM05D006824 ORTHO05D008779 3.3e-86 322.4 212 68.9
Medtr7g079530 Medicago truncatula HOM05D006824 ORTHO05D008779 4.3e-86 322.0 249 61.4
CiPaw.08G117600 Carya illinoinensis HOM05D006824 ORTHO05D008779 5.6e-86 321.6 219 68.0
Glyma.09G252100 Glycine max HOM05D006824 ORTHO05D008779 7.3e-86 321.2 247 61.9
Gohir.A02G138800 Gossypium hirsutum HOM05D006824 ORTHO05D008779 7.3e-86 321.2 209 68.9
BraA07t30276Z Brassica rapa HOM05D006824 ORTHO05D008779 1.2e-85 320.5 206 70.4
A07p26320 Brassica napus HOM05D006824 ORTHO05D008779 1.6e-85 320.1 206 70.4
THA.LOC104813550 Tarenaya hassleriana HOM05D006824 ORTHO05D008779 1.6e-85 320.1 220 65.9
MD12G1258900 Malus domestica HOM05D006824 ORTHO05D008779 2.1e-85 319.7 228 65.4
Gorai.003G050700 Gossypium raimondii HOM05D006824 ORTHO05D008779 3.6e-85 318.9 209 68.9
CARHR049030 Cardamine hirsuta HOM05D006824 ORTHO05D008779 1.1e-84 317.4 212 72.2
Eucgr.H01379 Eucalyptus grandis HOM05D006824 ORTHO05D008779 2.3e-84 316.2 248 62.1
SGA_v2.0_scaffold13G06472 Striga asiatica HOM05D006824 ORTHO05D008779 2.3e-84 316.2 241 63.1
Carub.0002s2772 Capsella rubella HOM05D006824 ORTHO05D008779 8.9e-84 314.3 214 70.1
COL.COLO4_19831 Corchorus olitorius HOM05D006824 ORTHO05D008779 8.9e-84 314.3 199 69.8
Sabra10G0110900 Salix brachista HOM05D006824 ORTHO05D008779 8.9e-84 314.3 199 70.4
TWI14G0776 Tripterygium wilfordii HOM05D006824 ORTHO05D008779 1.5e-83 313.5 209 67.0
Thhalv10019052m.g Eutrema salsugineum HOM05D006824 ORTHO05D008779 2.0e-83 313.2 212 69.3
Sp5g35980 Schrenkiella parvula HOM05D006824 ORTHO05D008779 2.0e-83 313.2 229 65.9
EL10Ac4g09985 Beta vulgaris HOM05D006824 ORTHO05D008779 2.6e-83 312.8 219 66.2
Migut.F01795 Erythranthe guttata HOM05D006824 ORTHO05D008779 3.4e-83 312.4 199 70.4
Nitab4.5_0009285g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 4.4e-83 312.0 245 66.5
BolC6t38040H Brassica oleracea HOM05D006824 ORTHO05D008779 5.8e-83 311.6 229 64.2
ClCG11G010940 Citrullus lanatus HOM05D006824 ORTHO05D008779 5.8e-83 311.6 219 66.7
Aa31LG4G40 Aethionema arabicum HOM05D006824 ORTHO05D008779 7.5e-83 311.2 215 67.4
Psat3g104840 Pisum sativum HOM05D006824 ORTHO05D008779 7.5e-83 311.2 244 60.7
PGR031G0982 Punica granatum HOM05D006824 ORTHO05D008779 1.3e-82 310.5 252 57.5
Ca_07965_v3 Cicer arietinum L. HOM05D006824 ORTHO05D008779 1.7e-82 310.1 223 64.6
arahy.Tifrunner.gnm1.ann1.3Y20MY Arachis hypogaea HOM05D006824 ORTHO05D008779 2.9e-82 309.3 230 63.0
CsaV3_2G009540 Cucumis sativus L. HOM05D006824 ORTHO05D008779 2.9e-82 309.3 258 60.5
arahy.Tifrunner.gnm1.ann1.8HY0WZ Arachis hypogaea HOM05D006824 ORTHO05D008779 6.4e-82 308.1 230 62.6
DCAR_005505 Daucus carota HOM05D006824 ORTHO05D008779 6.4e-82 308.1 204 66.2
FAN02G3690 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.9e-81 306.6 229 65.1
Sed0011929 Sechium edule HOM05D006824 ORTHO05D008779 1.9e-81 306.6 205 68.8
AT1G79790 Arabidopsis thaliana HOM05D006824 ORTHO05D008779 4.1e-81 305.4 237 63.3
Manes.14G158930 Manihot esculenta HOM05D006824 ORTHO05D008779 5.4e-81 305.1 230 61.3
PSO170G6807 Papaver somniferum HOM05D006824 ORTHO05D008779 7.1e-81 304.7 223 64.6
SalBow3G1586 Salvia bowleyana HOM05D006824 ORTHO05D008779 4.6e-80 302.0 245 58.4
CDE09G0666 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 6.0e-80 301.6 220 65.0
Aqoxy5G00154 Aquilegia oxysepala HOM05D006824 ORTHO05D008779 2.3e-79 299.7 226 61.9
CDE02G0053 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 2.3e-79 299.7 254 60.6
FAN14G1847 Fragaria x ananassa HOM05D006824 ORTHO05D008779 5.1e-79 298.5 215 66.0
HPP92_009935 Vanilla planifolia HOM05D006824 ORTHO05D008779 7.6e-75 284.6 182 69.2
Cpa.g.sc123.9 Carica papaya HOM05D006824 ORTHO05D008779 1.6e-72 276.9 161 76.4
Ciclev10012732m.g Citrus clementina HOM05D006824 ORTHO05D008779 1.0e-71 274.2 201 62.7
Ah.06g195550 Amaranthus hybridus HOM05D006824 ORTHO05D008779 1.3e-71 273.9 211 64.0
Nn1g09799 Nelumbo nucifera HOM05D006824 ORTHO05D008779 5.1e-71 271.9 182 69.8
MELO3C025302.2 Cucumis melo HOM05D006824 ORTHO05D008779 6.2e-69 265.0 220 59.1
MELO3C008753.2 Cucumis melo HOM05D006824 ORTHO05D008779 1.1e-68 264.2 220 59.1
Lj1g0017863 Lotus japonicus HOM05D006824 ORTHO05D008779 9.0e-68 261.2 186 63.4
CBR_g54655 Chara braunii HOM05D006824 ORTHO05D008779 5.8e-67 258.5 194 61.9
MBI08_g02107_MAGBIO Magnolia biondii HOM05D006824 ORTHO05D008779 4.9e-66 255.4 175 65.7
SMO361G0474 Selaginella moellendorffii HOM05D006824 ORTHO05D008779 4.9e-66 255.4 192 62.5
AagrBONN_evm.TU.Sc2ySwM_344.3559 Anthoceros agrestis HOM05D006824 ORTHO05D008779 6.0e-64 248.4 194 60.8
Nitab4.5_0008294g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 1.3e-63 247.3 262 54.6
Mapoly0002s0020 Marchantia polymorpha HOM05D006824 ORTHO05D008779 1.7e-63 246.9 250 50.8
Pp3c3_9990 Physcomitrium patens HOM05D006824 ORTHO05D008779 3.9e-63 245.7 199 55.3
FvH4_6g00710 Fragaria vesca HOM05D006824 ORTHO05D008779 3.6e-61 239.2 156 72.4
Hma1.2p1_0171F.1_g075760 Hydrangea macrophylla HOM05D006824 ORTHO05D008779 3.1e-60 236.1 134 79.9
SalBow3G1143 Salvia bowleyana HOM05D006824 ORTHO05D008779 5.3e-60 235.3 166 64.5
Gohir.D03G049300 Gossypium hirsutum HOM05D006824 ORTHO05D008779 8.4e-58 228.0 148 68.9
Zm00001eb169290 Zea mays HOM05D006824 ORTHO05D008779 7.9e-56 221.5 192 58.3
Cre13.g563200 Chlamydomonas reinhardtii HOM05D006824 ORTHO05D008779 1.4e-49 200.7 204 49.0
QL01p046721 Quercus lobata HOM05D006824 ORTHO05D008779 6.7e-47 191.8 128 68.8
Solyc05g055820.3 Solanum lycopersicum HOM05D006824 ORTHO05D008779 4.8e-45 185.7 101 87.1
MD04G1242100 Malus domestica HOM05D006824 ORTHO05D008779 2.2e-42 176.8 109 71.6
arahy.Tifrunner.gnm1.ann1.EIZA4A Arachis hypogaea HOM05D006824 ORTHO05D008779 1.9e-41 173.7 104 71.2
Hund07329 Selenicereus undatus HOM05D006824 ORTHO05D008779 3.2e-41 172.9 254 39.8
PRCOL_00006210 Prasinoderma coloniale HOM05D006824 ORTHO05D008779 5.1e-39 165.6 182 44.0
arahy.Tifrunner.gnm1.ann1.JEI8NT Arachis hypogaea HOM05D006824 ORTHO05D008779 3.1e-36 156.4 144 52.1
FAN09G4644 Fragaria x ananassa HOM05D006824 ORTHO05D008779 8.8e-31 138.3 81 76.5
CARHR074720 Cardamine hirsuta HOM05D006824 ORTHO05D008779 3.4e-27 126.3 88 67.0
MD04G1242000 Malus domestica HOM05D006824 ORTHO05D008779 6.9e-20 102.1 71 66.2
SEGI_14412 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 1.9e-17 94.0 54 75.9
ATR0824G111 Amborella trichopoda HOM05D006824 ORTHO05D008779 2.5e-17 93.6 83 59.0
arahy.Tifrunner.gnm1.ann1.X7EDXL Arachis hypogaea HOM05D006824 ORTHO05D021501 4.7e-16 89.4 54 74.1
Psat3g104160 Pisum sativum HOM05D006824 ORTHO05D008779 6.7e-15 85.5 60 65.0
ATR0263G001 Amborella trichopoda HOM05D006824 ORTHO05D008779 9.7e-14 81.6 82 45.1
FAN09G1422 Fragaria x ananassa HOM05D001170 ORTHO05D002759 1.2e-11 74.7 54 57.4
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 1.0e-10 71.6 91 44.0
arahy.Tifrunner.gnm1.ann1.96LZZJ Arachis hypogaea HOM05D006824 ORTHO05D021501 1.0e-10 71.6 91 44.0
arahy.Tifrunner.gnm1.ann1.DM3ST4 Arachis hypogaea HOM05D006824 ORTHO05D021501 1.0e-10 71.6 91 44.0
arahy.Tifrunner.gnm1.ann1.LN2II4 Arachis hypogaea HOM05D006661 ORTHO05D021501 2.9e-10 70.1 90 43.3
SEGI_33071 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 3.8e-10 69.7 65 50.8
arahy.Tifrunner.gnm1.ann1.0X0W56 Arachis hypogaea HOM05D006824 ORTHO05D021501 1.9e-09 67.4 42 69.0
Cpa.g.sc32.161 Carica papaya HOM05D006824 ORTHO05D008779 2.0e-06 57.4 33 75.8
arahy.Tifrunner.gnm1.ann1.LK4K8I Arachis hypogaea HOM05D006688 ORTHO05D008550 9.7e-06 55.1 34 64.7


User provided reference genes

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