Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 0.0e+00 1256.5 638 100.0
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 0.0e+00 1160.6 638 93.4
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 0.0e+00 1154.8 638 93.1
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 0.0e+00 1151.3 638 92.9
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 0.0e+00 1127.1 638 90.6
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 0.0e+00 1117.4 628 91.6
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 0.0e+00 1086.2 628 89.8
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 4.5e-291 1004.2 637 82.1
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 7.6e-291 1003.4 628 82.5
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 3.2e-289 998.0 638 82.4
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 1.0e-287 993.0 634 81.5
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 1.0e-287 993.0 636 81.0
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 6.7e-287 990.3 643 80.9
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 1.3e-285 986.1 608 83.9
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 2.4e-284 981.9 605 83.0
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 2.4e-284 981.9 615 82.8
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.0e-283 978.8 582 85.2
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 1.7e-282 975.7 622 80.9
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 8.5e-282 973.4 628 80.7
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 9.4e-281 969.9 621 82.3
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.3e-279 965.3 583 84.4
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 3.9e-279 964.5 622 80.2
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 6.7e-279 963.8 621 80.4
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 2.0e-278 962.2 609 81.9
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 2.6e-278 961.8 627 78.8
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 4.8e-277 957.6 627 79.1
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 6.3e-277 957.2 640 78.1
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.1e-276 956.4 639 77.6
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.4e-276 956.1 626 79.1
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 3.1e-276 954.9 577 83.4
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 5.3e-276 954.1 632 78.3
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 1.5e-275 952.6 622 78.8
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 1.7e-274 949.1 615 79.8
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 6.5e-274 947.2 610 79.8
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 7.2e-273 943.7 614 79.0
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 2.1e-272 942.2 584 81.3
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 5.2e-271 937.6 634 77.4
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 6.7e-271 937.2 634 77.4
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 1.1e-270 936.4 627 77.8
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.5e-270 936.0 593 80.6
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.5e-270 936.0 627 77.8
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 1.5e-270 936.0 609 79.5
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 5.7e-270 934.1 598 80.1
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 1.3e-269 932.9 642 75.7
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 1.3e-269 932.9 626 77.6
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 2.8e-269 931.8 627 77.5
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 3.7e-269 931.4 632 75.8
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 4.8e-269 931.0 598 80.3
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 8.2e-269 930.2 587 81.3
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.1e-268 929.9 627 77.4
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 4.1e-268 927.9 628 77.2
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 1.7e-266 922.5 603 77.4
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 2.2e-266 922.2 600 79.5
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 3.8e-266 921.4 632 76.4
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 5.0e-266 921.0 581 80.2
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 6.5e-266 920.6 632 75.6
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 1.1e-265 919.8 571 82.8
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.5e-265 919.5 607 78.4
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 5.5e-265 917.5 584 80.3
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 4.7e-264 914.4 629 76.5
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 3.0e-263 911.8 599 78.5
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 2.0e-262 909.1 651 73.9
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 2.6e-262 908.7 584 79.8
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 5.7e-262 907.5 629 75.5
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 1.3e-261 906.4 623 75.8
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 2.2e-261 905.6 610 77.2
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 2.2e-261 905.6 584 79.3
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 1.8e-260 902.5 651 73.6
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 4.1e-260 901.4 610 76.9
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 4.1e-260 901.4 629 74.6
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 5.3e-260 901.0 579 79.6
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.1e-257 893.3 636 73.9
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 7.2e-257 890.6 600 77.5
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 4.7e-256 887.9 619 75.3
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 6.3e-253 877.5 587 76.5
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 8.3e-253 877.1 616 74.7
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 4.5e-251 871.3 582 77.1
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 3.8e-250 868.2 518 84.2
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 6.5e-250 867.5 599 74.8
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 2.5e-249 865.5 613 73.9
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 3.2e-249 865.1 599 75.0
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 1.0e-247 860.1 581 76.1
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 4.0e-247 858.2 619 73.0
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 5.2e-247 857.8 566 78.6
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 5.7e-246 854.4 574 77.2
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 4.9e-245 851.3 581 75.9
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 3.1e-244 848.6 689 66.6
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 7.0e-244 847.4 621 71.5
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.7e-242 842.8 598 74.1
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 2.5e-241 839.0 576 74.1
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 4.3e-241 838.2 637 70.3
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 3.6e-240 835.1 577 75.7
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 8.0e-240 833.9 586 73.7
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 7.5e-238 827.4 578 75.1
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.7e-237 826.2 628 70.4
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 2.9e-237 825.5 630 70.8
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 1.4e-236 823.2 613 71.0
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 1.4e-236 823.2 588 73.3
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.8e-236 822.8 576 74.1
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 1.8e-236 822.8 576 75.2
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 1.6e-235 819.7 594 71.4
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 3.5e-235 818.5 628 70.4
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 4.6e-235 818.1 576 74.1
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 1.0e-234 817.0 617 70.5
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 1.0e-234 817.0 588 72.8
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 1.0e-234 817.0 576 74.0
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 1.7e-234 816.2 576 74.0
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 5.0e-234 814.7 591 72.4
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 3.3e-233 812.0 615 69.9
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 4.3e-233 811.6 590 72.2
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 4.3e-233 811.6 590 72.2
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 1.6e-232 809.7 576 73.4
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 1.6e-232 809.7 576 73.4
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.8e-232 808.9 638 69.4
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 4.0e-231 805.1 545 76.0
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 4.0e-231 805.1 545 76.0
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 6.8e-231 804.3 585 72.8
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 4.1e-228 795.0 629 67.9
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 4.1e-228 795.0 578 73.7
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.8e-223 779.6 588 70.4
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 3.2e-220 768.8 526 74.3
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 6.0e-219 764.6 538 71.7
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.0e-218 762.3 586 68.6
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 4.3e-217 758.4 534 72.5
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 2.8e-216 755.7 470 81.3
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 6.2e-216 754.6 524 72.5
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 1.3e-213 746.9 420 88.3
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 7.8e-211 737.6 570 66.7
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 1.0e-210 737.3 632 65.3
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.1e-210 734.9 605 65.1
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 4.3e-209 731.9 410 88.3
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 9.6e-209 730.7 518 73.0
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 2.4e-207 726.1 591 65.7
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 2.0e-206 723.0 412 87.4
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 2.9e-205 719.2 639 62.9
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 6.6e-202 708.0 405 86.7
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 9.0e-199 697.6 547 67.1
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.9e-197 691.8 526 68.6
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.7e-195 686.0 596 63.3
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.3e-194 683.7 567 64.9
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 4.5e-190 668.7 495 69.7
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 4.9e-189 665.2 520 67.1
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 8.4e-189 664.5 531 65.2
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.3e-185 652.1 526 65.8
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 4.2e-180 635.6 489 70.8
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 2.5e-164 583.2 384 77.3
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 4.7e-163 578.9 574 53.7
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 1.1e-159 567.8 532 60.5
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 8.5e-157 558.1 476 60.5
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 2.2e-144 516.9 366 74.0
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.7e-139 500.0 464 59.3
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.0e-138 496.5 347 74.9
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 1.5e-108 397.9 239 81.6
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 8.7e-77 292.4 157 92.4
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 1.4e-63 248.4 145 88.3
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 5.1e-53 213.4 168 64.3
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 1.4e-50 205.3 168 61.3
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 2.2e-48 198.0 165 59.4
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 1.4e-47 195.3 165 58.8
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 3.5e-41 174.1 123 69.9
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 1.0e-37 162.5 98 84.7
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 2.2e-27 128.3 94 69.1
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.3e-24 119.0 94 64.9
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 5.0e-24 117.1 115 56.5
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 5.7e-20 103.6 60 86.7
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.5e-20 103.2 320 27.5
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.6e-17 95.5 274 28.1
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 2.9e-16 91.3 123 39.0
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 6.6e-16 90.1 187 31.0
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 8.6e-16 89.7 86 55.8
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 3.3e-15 87.8 100 54.0
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 6.1e-14 83.6 189 33.9
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 6.1e-14 83.6 70 72.9
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.4e-10 72.4 66 62.1
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 3.5e-09 67.8 56 53.6
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.9e-07 62.0 74 48.6


User provided reference genes

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