Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 1.5e-148 529.6 305 100.0
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 5.5e-130 468.0 305 90.5
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.2e-126 456.1 305 87.2
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 1.5e-122 443.4 280 93.9
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 8.3e-118 427.6 306 80.4
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 4.1e-117 425.2 305 82.3
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 2.9e-115 419.1 307 79.5
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 3.8e-115 418.7 307 77.2
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 1.5e-114 416.8 307 75.2
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.9e-114 416.4 308 80.2
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 2.5e-114 416.0 312 79.5
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 4.3e-114 415.2 308 78.6
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 5.6e-114 414.8 321 74.1
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 7.3e-114 414.5 306 79.4
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 1.6e-113 413.3 306 76.1
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 1.6e-113 413.3 307 79.5
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 2.8e-113 412.5 307 79.5
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 8.0e-113 411.0 307 79.5
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 1.0e-112 410.6 306 75.8
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 4.0e-112 408.7 306 77.8
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 2.0e-111 406.4 307 76.9
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 3.4e-111 405.6 306 72.9
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 1.3e-110 403.7 309 79.3
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 1.3e-110 403.7 307 76.9
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 2.9e-110 402.5 306 67.0
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 4.9e-110 401.7 279 87.1
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 1.8e-109 399.8 307 77.9
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 2.4e-109 399.4 306 78.8
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 2.4e-109 399.4 307 73.3
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 7.0e-109 397.9 314 76.1
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 9.2e-109 397.5 307 73.3
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.6e-108 396.7 306 72.9
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 7.8e-108 394.4 306 75.2
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 7.8e-108 394.4 306 76.8
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 1.0e-107 394.0 307 73.6
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 5.0e-107 391.7 306 75.8
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 1.9e-106 389.8 280 78.6
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 3.3e-106 389.0 309 68.0
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 4.3e-106 388.7 313 63.6
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 4.3e-106 388.7 306 64.7
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 3.6e-105 385.6 308 64.9
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 8.0e-105 384.4 313 76.0
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 1.0e-104 384.0 307 77.2
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 1.0e-104 384.0 308 76.3
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 1.4e-104 383.6 321 74.8
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 1.4e-104 383.6 311 77.8
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 2.3e-104 382.9 301 64.8
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 2.3e-104 382.9 306 72.5
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 2.3e-104 382.9 307 75.6
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.1e-104 382.5 310 70.3
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 8.9e-104 380.9 308 75.0
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 1.2e-103 380.6 311 74.3
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 4.9e-102 375.2 307 75.2
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 3.2e-101 372.5 308 71.4
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 5.4e-101 371.7 307 62.9
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 5.4e-101 371.7 307 65.1
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 1.2e-100 370.5 309 65.0
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 2.7e-100 369.4 308 64.0
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 3.5e-100 369.0 339 59.0
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 6.0e-100 368.2 305 75.1
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 1.0e-99 367.5 309 64.7
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 3.0e-99 365.9 306 63.7
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 3.9e-99 365.5 309 62.1
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 3.9e-99 365.5 309 64.4
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 5.0e-99 365.2 306 71.2
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 6.6e-99 364.8 309 62.1
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 6.6e-99 364.8 307 71.0
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 8.6e-99 364.4 308 63.3
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 1.9e-98 363.2 314 60.2
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 3.3e-98 362.5 308 65.9
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 4.3e-98 362.1 261 72.0
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 7.3e-98 361.3 309 61.8
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 1.6e-97 360.1 282 79.4
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 2.8e-97 359.4 307 61.6
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 1.1e-96 357.5 318 70.4
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 5.2e-96 355.1 307 60.9
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 5.2e-96 355.1 340 68.2
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 1.2e-95 354.0 231 95.2
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 1.7e-94 350.1 310 62.6
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 1.1e-93 347.4 319 65.8
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 2.4e-93 346.3 307 62.5
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 2.1e-92 343.2 308 58.4
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 3.5e-92 342.4 311 66.9
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 5.1e-91 338.6 306 58.2
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.1e-90 337.4 320 68.1
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.5e-90 336.3 257 80.5
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 5.6e-90 335.1 306 61.8
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 9.5e-90 334.3 257 80.2
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 1.6e-89 333.6 290 71.0
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.6e-89 333.6 320 67.5
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 2.1e-89 333.2 310 68.1
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 2.8e-89 332.8 309 57.0
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 6.2e-89 331.6 356 57.6
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 6.2e-89 331.6 356 57.6
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 6.2e-89 331.6 281 74.4
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 8.9e-88 327.8 299 68.2
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 4.4e-87 325.5 337 54.0
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 5.8e-87 325.1 324 62.7
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 1.3e-86 323.9 307 55.0
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 6.4e-86 321.6 307 69.7
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 4.6e-84 315.5 264 75.0
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 1.7e-83 313.5 307 69.4
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 1.7e-83 313.5 259 64.5
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 5.6e-82 308.5 308 54.5
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 7.3e-82 308.1 243 79.4
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 2.1e-81 306.6 350 57.7
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 2.1e-81 306.6 350 57.7
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 5.2e-80 302.0 309 54.4
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.9e-77 293.5 213 81.2
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 4.2e-77 292.4 231 82.3
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 2.3e-75 286.6 249 64.7
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 7.3e-74 281.6 273 57.1
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 1.3e-73 280.8 213 78.9
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 2.4e-72 276.6 234 62.4
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 3.8e-70 269.2 233 77.7
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 3.8e-70 269.2 239 77.8
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 2.4e-69 266.5 233 77.3
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 4.2e-69 265.8 232 60.8
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 3.3e-66 256.1 237 59.5
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 1.3e-65 254.2 298 49.7
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 4.8e-65 252.3 189 85.7
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 1.4e-64 250.8 295 51.9
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 8.4e-62 241.5 245 65.7
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 9.3e-61 238.0 214 74.3
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 2.7e-60 236.5 233 71.2
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 7.9e-60 235.0 234 72.2
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 5.3e-56 222.2 301 46.5
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 4.9e-54 215.7 129 78.3
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 4.3e-50 202.6 246 65.9
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 5.7e-50 202.2 242 50.0
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 6.9e-48 195.3 234 50.0
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 6.9e-48 195.3 234 50.0
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 3.2e-45 186.4 321 46.4
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 1.8e-43 180.6 282 41.5
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 4.3e-42 176.0 244 55.7
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 3.8e-38 162.9 330 35.8
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 3.8e-38 162.9 146 72.6
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 5.0e-38 162.5 244 53.3
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 5.5e-37 159.1 149 79.2
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 1.4e-35 154.5 171 52.0
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 1.8e-35 154.1 162 54.9
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 4.8e-33 146.0 247 40.9
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.4e-32 143.7 74 85.1
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 4.1e-32 142.9 119 60.5
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 2.3e-27 127.1 73 71.2
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 1.1e-26 124.8 73 74.0
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 9.1e-24 115.2 93 65.6
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.2e-23 114.8 157 63.7
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 1.6e-20 104.4 59 71.2
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 2.2e-17 94.0 128 32.0
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 3.7e-17 93.2 92 54.3
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 1.1e-16 91.7 71 69.0
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 9.1e-16 88.6 50 70.0
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 8.5e-14 82.0 128 43.0
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 4.7e-12 76.3 103 45.6
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 2.8e-09 67.0 46 73.9
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 8.3e-09 65.5 46 71.7
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 5.4e-08 62.8 99 40.4


User provided reference genes

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