Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G678.9 Capsicum annuum HOM05D000075 ORTHO05D115665 6.4e-64 247.3 128 100.0
Solyc09g011490.3 Solanum lycopersicum HOM05D000075 ORTHO05D000073 1.8e-18 96.3 104 52.9
Nitab4.5_0006055g0020 Nicotiana tabacum HOM05D000075 ORTHO05D000073 2.4e-18 95.9 85 63.5
Sopen09g006240 Solanum pennellii HOM05D000075 ORTHO05D000073 2.4e-18 95.9 104 52.9
Sopen09g006250 Solanum pennellii HOM05D000075 ORTHO05D000073 5.9e-17 91.3 135 47.4
Sopen09g006290 Solanum pennellii HOM05D000075 ORTHO05D000073 5.9e-17 91.3 91 57.1
Sopen09g010950 Solanum pennellii HOM05D000075 ORTHO05D000073 7.7e-17 90.9 112 48.2
PGSC0003DMG400002175 Solanum tuberosum HOM05D000075 ORTHO05D000073 7.7e-17 90.9 73 64.4
CAN.G678.7 Capsicum annuum HOM05D000075 ORTHO05D000073 1.0e-16 90.5 122 50.0
Nitab4.5_0000008g0130 Nicotiana tabacum HOM05D000075 ORTHO05D000073 1.0e-16 90.5 132 47.0
Nitab4.5_0000008g0080 Nicotiana tabacum HOM05D000075 ORTHO05D000073 1.7e-16 89.7 116 50.9
Peaxi162Scf00109g00019 Petunia axillaris HOM05D000075 ORTHO05D000073 1.7e-16 89.7 122 50.0
PGSC0003DMG400002174 Solanum tuberosum HOM05D000075 ORTHO05D000073 1.7e-16 89.7 76 63.2
Solyc09g011500.3 Solanum lycopersicum HOM05D000075 ORTHO05D000073 2.2e-16 89.4 73 63.0
Nitab4.5_0006055g0010 Nicotiana tabacum HOM05D000075 ORTHO05D000073 2.9e-16 89.0 85 58.8
CAN.G608.39 Capsicum annuum HOM05D000075 ORTHO05D000073 3.8e-16 88.6 136 45.6
Nitab4.5_0000008g0070 Nicotiana tabacum HOM05D000075 ORTHO05D000073 1.1e-15 87.0 121 47.1
Peaxi162Scf00109g00029 Petunia axillaris HOM05D000075 ORTHO05D000073 1.1e-15 87.0 92 55.4
Sopen09g006280 Solanum pennellii HOM05D000075 ORTHO05D000073 1.1e-15 87.0 134 45.5
PGSC0003DMG400002169 Solanum tuberosum HOM05D000075 ORTHO05D000073 1.1e-15 87.0 73 61.6
PGSC0003DMG400019914 Solanum tuberosum HOM05D000075 ORTHO05D000073 1.1e-15 87.0 85 57.6
Peaxi162Scf00109g00020 Petunia axillaris HOM05D000075 ORTHO05D000073 1.5e-15 86.7 63 73.0
Solyc09g011520.3 Solanum lycopersicum HOM05D000075 ORTHO05D000073 1.5e-15 86.7 140 44.3
Nitab4.5_0000008g0170 Nicotiana tabacum HOM05D000075 ORTHO05D000073 3.2e-15 85.5 82 58.5
Nitab4.5_0000008g0030 Nicotiana tabacum HOM05D000075 ORTHO05D000073 4.2e-15 85.1 112 50.9
Nitab4.5_0008292g0010 Nicotiana tabacum HOM05D000075 ORTHO05D000073 4.2e-15 85.1 59 74.6
PGSC0003DMG400002170 Solanum tuberosum HOM05D000075 ORTHO05D000073 5.5e-15 84.7 105 49.5
CAN.G181.14 Capsicum annuum HOM05D000075 ORTHO05D000073 7.2e-15 84.3 73 65.8
Nitab4.5_0012027g0010 Nicotiana tabacum HOM05D000075 ORTHO05D000073 7.2e-15 84.3 96 54.2
Solyc09g011510.2 Solanum lycopersicum HOM05D000075 ORTHO05D000073 9.4e-15 84.0 134 45.5
PGSC0003DMG400002180 Solanum tuberosum HOM05D000075 ORTHO05D000073 9.4e-15 84.0 88 55.7
CAN.G334.17 Capsicum annuum HOM05D000075 ORTHO05D000073 2.1e-14 82.8 73 63.0
Nitab4.5_0000008g0140 Nicotiana tabacum HOM05D000075 ORTHO05D000073 2.1e-14 82.8 113 48.7
Nitab4.5_0008292g0030 Nicotiana tabacum HOM05D000075 ORTHO05D000073 2.1e-14 82.8 85 57.6
Peaxi162Scf53700g00004 Petunia axillaris HOM05D000075 ORTHO05D000073 2.7e-14 82.4 63 71.4
PGSC0003DMG400004414 Solanum tuberosum HOM05D000075 ORTHO05D000073 2.7e-14 82.4 85 55.3
Nitab4.5_0017813g0010 Nicotiana tabacum HOM05D000075 ORTHO05D000073 4.7e-14 81.6 82 54.9
Sopen09g006410 Solanum pennellii HOM05D000075 ORTHO05D000073 4.7e-14 81.6 85 51.8
CAN.G608.36 Capsicum annuum HOM05D000075 ORTHO05D000073 6.1e-14 81.3 61 68.9
CAN.G608.37 Capsicum annuum HOM05D000075 ORTHO05D000073 1.0e-13 80.5 85 54.1
CAN.G678.1 Capsicum annuum HOM05D000075 ORTHO05D000073 1.4e-13 80.1 71 62.0
PGSC0003DMG400002166 Solanum tuberosum HOM05D000075 ORTHO05D000073 1.4e-13 80.1 59 71.2
CAN.G334.20 Capsicum annuum HOM05D000075 ORTHO05D000073 1.8e-13 79.7 73 58.9
Sopen09g006300 Solanum pennellii HOM05D000075 ORTHO05D000073 1.8e-13 79.7 74 58.1
Sopen09g006330 Solanum pennellii HOM05D000075 ORTHO05D000073 3.0e-13 79.0 119 45.4
PGSC0003DMG400002179 Solanum tuberosum HOM05D000075 ORTHO05D000073 3.0e-13 79.0 60 63.3
Solyc09g011550.3 Solanum lycopersicum HOM05D000075 ORTHO05D000073 4.0e-13 78.6 98 49.0
Sopen09g006350 Solanum pennellii HOM05D000075 ORTHO05D000073 6.8e-13 77.8 70 60.0
Peaxi162Scf00109g00018 Petunia axillaris HOM05D000075 ORTHO05D000073 8.8e-13 77.4 112 49.1
Sopen09g006320 Solanum pennellii HOM05D000075 ORTHO05D000073 8.8e-13 77.4 82 53.7
Nitab4.5_0000008g0150 Nicotiana tabacum HOM05D000075 ORTHO05D000073 1.2e-12 77.0 94 47.9
Nitab4.5_0012932g0010 Nicotiana tabacum HOM05D000075 ORTHO05D000073 1.2e-12 77.0 94 47.9
Peaxi162Scf00109g00112 Petunia axillaris HOM05D000075 ORTHO05D000073 1.2e-12 77.0 58 72.4
Solyc09g011620.2 Solanum lycopersicum HOM05D000075 ORTHO05D000073 1.5e-12 76.6 73 53.4
Nitab4.5_0008696g0020 Nicotiana tabacum HOM05D000075 ORTHO05D000073 2.0e-12 76.3 94 45.7
Sopen09g006340 Solanum pennellii HOM05D000075 ORTHO05D000073 2.0e-12 76.3 59 67.8
Sopen09g006370 Solanum pennellii HOM05D000075 ORTHO05D000073 2.0e-12 76.3 91 52.7
PGSC0003DMG402002164 Solanum tuberosum HOM05D000075 ORTHO05D000073 2.0e-12 76.3 106 44.3
Nitab4.5_0000008g0180 Nicotiana tabacum HOM05D000075 ORTHO05D000073 2.6e-12 75.9 94 46.8
CAN.G678.6 Capsicum annuum HOM05D000075 ORTHO05D000073 3.4e-12 75.5 112 49.1
Sopen09g006390 Solanum pennellii HOM05D000075 ORTHO05D000073 3.4e-12 75.5 95 50.5
Nitab4.5_0002823g0010 Nicotiana tabacum HOM05D000075 ORTHO05D000073 5.7e-12 74.7 95 46.3
Sopen12g017180 Solanum pennellii HOM05D000075 ORTHO05D000073 5.7e-12 74.7 86 53.5
Solyc09g011590.4 Solanum lycopersicum HOM05D000075 ORTHO05D000073 7.5e-12 74.3 86 52.3
Sopen09g006360 Solanum pennellii HOM05D000075 ORTHO05D000073 7.5e-12 74.3 86 52.3
Solyc09g011600.3 Solanum lycopersicum HOM05D000075 ORTHO05D000073 9.8e-12 73.9 91 51.6
Sopen09g006400 Solanum pennellii HOM05D000075 ORTHO05D000073 9.8e-12 73.9 91 51.6
CAN.G334.21 Capsicum annuum HOM05D000075 ORTHO05D000073 2.2e-11 72.8 58 65.5
Peaxi162Scf00200g00088 Petunia axillaris HOM05D000075 ORTHO05D000073 2.2e-11 72.8 96 44.8
Nitab4.5_0000008g0190 Nicotiana tabacum HOM05D000075 ORTHO05D000073 3.7e-11 72.0 94 44.7
PGSC0003DMG400002172 Solanum tuberosum HOM05D000075 ORTHO05D000073 3.7e-11 72.0 75 52.0
Nitab4.5_0000652g0050 Nicotiana tabacum HOM05D000075 ORTHO05D000073 4.8e-11 71.6 94 45.7
PGSC0003DMG400002168 Solanum tuberosum HOM05D000075 ORTHO05D000073 4.8e-11 71.6 73 58.9
CAN.G334.8 Capsicum annuum HOM05D000075 ORTHO05D000073 6.3e-11 71.2 122 38.5
PGSC0003DMG400002171 Solanum tuberosum HOM05D000075 ORTHO05D000073 1.1e-10 70.5 62 51.6
Solyc10g084960.2 Solanum lycopersicum HOM05D000075 ORTHO05D000073 1.4e-10 70.1 86 44.2
Sopen10g034420 Solanum pennellii HOM05D000075 ORTHO05D000073 1.4e-10 70.1 85 45.9
PGSC0003DMG400002167 Solanum tuberosum HOM05D000075 ORTHO05D000073 1.4e-10 70.1 59 62.7
Peaxi162Scf00109g00024 Petunia axillaris HOM05D000075 ORTHO05D000073 3.1e-10 68.9 90 46.7
Peaxi162Scf00132g01013 Petunia axillaris HOM05D000075 ORTHO05D000073 3.1e-10 68.9 55 65.5
Sopen09g006450 Solanum pennellii HOM05D000075 ORTHO05D000073 3.1e-10 68.9 72 51.4
CAN.G334.7 Capsicum annuum HOM05D000075 ORTHO05D000073 4.1e-10 68.6 62 54.8
Solyc09g011630.3 Solanum lycopersicum HOM05D000075 ORTHO05D000073 5.4e-10 68.2 75 44.0
Solyc09g011640.5.1 Solanum lycopersicum HOM05D000075 ORTHO05D000073 5.4e-10 68.2 72 51.4
Sopen09g006440 Solanum pennellii HOM05D000075 ORTHO05D000073 5.4e-10 68.2 75 44.0
PGSC0003DMG400011012 Solanum tuberosum HOM05D000075 ORTHO05D000073 5.4e-10 68.2 75 49.3
CAN.G502.22 Capsicum annuum HOM05D000075 ORTHO05D000073 9.1e-10 67.4 85 44.7
Dinv37110 Davidia involucrata HOM05D000075 ORTHO05D000073 9.1e-10 67.4 62 53.2
CAN.G334.22 Capsicum annuum HOM05D000075 ORTHO05D000073 1.6e-09 66.6 72 50.0
CAN.G678.8 Capsicum annuum HOM05D000075 ORTHO05D043469 2.7e-09 65.9 52 65.4
Nitab4.5_0007364g0020 Nicotiana tabacum HOM05D000075 ORTHO05D000073 2.7e-09 65.9 94 41.5
CAN.G334.19 Capsicum annuum HOM05D000075 ORTHO05D000073 4.5e-09 65.1 59 57.6
PGSC0003DMG400002176 Solanum tuberosum HOM05D000075 ORTHO05D000073 7.7e-09 64.3 73 47.9
PGSC0003DMG400002163 Solanum tuberosum HOM05D000075 ORTHO05D000073 1.3e-08 63.5 76 43.4
Eucgr.K03036 Eucalyptus grandis HOM05D000075 ORTHO05D000073 1.7e-08 63.2 61 49.2
PGSC0003DMG401002177 Solanum tuberosum HOM05D000075 ORTHO05D000073 2.9e-08 62.4 46 58.7
CAN.G1398.11 Capsicum annuum HOM05D000075 ORTHO05D000073 3.8e-08 62.0 36 86.1
Eucgr.K03031 Eucalyptus grandis HOM05D000075 ORTHO05D000073 3.8e-08 62.0 61 45.9
Eucgr.K03029 Eucalyptus grandis HOM05D000075 ORTHO05D000073 5.0e-08 61.6 61 49.2
Eucgr.K03034 Eucalyptus grandis HOM05D000075 ORTHO05D000073 5.0e-08 61.6 61 49.2
Hma1.2p1_0671F.1_g200620 Hydrangea macrophylla HOM05D000075 ORTHO05D000073 5.0e-08 61.6 62 45.2
Lj2A85T63 Lonicera japonica HOM05D000075 ORTHO05D000073 8.5e-08 60.8 63 49.2
Actinidia29163 Actinidia chinensis HOM05D000075 ORTHO05D000073 1.9e-07 59.7 64 48.4
DCAR_024049 Daucus carota HOM05D000075 ORTHO05D000073 1.9e-07 59.7 91 40.7
Hma1.2p1_0671F.1_g200610 Hydrangea macrophylla HOM05D000075 ORTHO05D000073 1.9e-07 59.7 62 43.5
SGA_v2.0_scaffold94G28559 Striga asiatica HOM05D000075 ORTHO05D000073 1.9e-07 59.7 62 45.2
Migut.L01975 Erythranthe guttata HOM05D000075 ORTHO05D000073 3.2e-07 58.9 62 45.2
MD04G1139500 Malus domestica HOM05D000075 ORTHO05D000073 3.2e-07 58.9 46 60.9
Nn7g36368 Nelumbo nucifera HOM05D000075 ORTHO05D000073 3.2e-07 58.9 63 54.0
CAN.G608.38 Capsicum annuum HOM05D000075 ORTHO05D000073 4.2e-07 58.5 81 40.7
Nitab4.5_0000008g0060 Nicotiana tabacum HOM05D000075 ORTHO05D000073 5.5e-07 58.2 75 41.3
GSVIVG01034060001 Vitis vinifera HOM05D000075 ORTHO05D000073 5.5e-07 58.2 62 48.4
CSS0010169 Camellia sinensis var. sinensis HOM05D000075 ORTHO05D000073 7.2e-07 57.8 64 45.3
Eucgr.K03019 Eucalyptus grandis HOM05D000075 ORTHO05D000073 7.2e-07 57.8 62 48.4
MBI19_g18417_MAGBIO Magnolia biondii HOM05D000075 ORTHO05D000073 7.2e-07 57.8 60 50.0
MBI19_g18419_MAGBIO Magnolia biondii HOM05D000075 ORTHO05D000073 7.2e-07 57.8 62 50.0
SalBow4G2765 Salvia bowleyana HOM05D000075 ORTHO05D000073 7.2e-07 57.8 61 49.2
SalBow4G2781 Salvia bowleyana HOM05D000075 ORTHO05D000073 7.2e-07 57.8 67 47.8
GSVIVG01034058001 Vitis vinifera HOM05D000075 ORTHO05D000073 7.2e-07 57.8 61 47.5
EL10Ac7g17648 Beta vulgaris HOM05D000075 ORTHO05D000073 9.4e-07 57.4 61 45.9
CiPaw.10G149700 Carya illinoinensis HOM05D000075 ORTHO05D000073 9.4e-07 57.4 63 44.4
Ciclev10012717m.g Citrus clementina HOM05D000075 ORTHO05D000073 9.4e-07 57.4 62 45.2
MD04G1139600 Malus domestica HOM05D000075 ORTHO05D000073 9.4e-07 57.4 47 59.6
Oeu053796.1 Olea europaea HOM05D000075 ORTHO05D000073 9.4e-07 57.4 60 46.7
RcHm_v2.0_Chr3g0464541 Rosa chinensis HOM05D000075 ORTHO05D000073 9.4e-07 57.4 62 45.2
vmacro20198 Vaccinium macrocarpon HOM05D000075 ORTHO05D000073 9.4e-07 57.4 64 46.9
Eucgr.K03027 Eucalyptus grandis HOM05D000075 ORTHO05D000073 1.2e-06 57.0 62 46.8
MBI19_g04342_MAGBIO Magnolia biondii HOM05D000075 ORTHO05D000073 1.2e-06 57.0 62 45.2
Eucgr.K03021 Eucalyptus grandis HOM05D000075 ORTHO05D000073 1.6e-06 56.6 66 42.4
FvH4_6g12690 Fragaria vesca HOM05D000075 ORTHO05D000073 1.6e-06 56.6 64 51.6
FAN05G4908 Fragaria x ananassa HOM05D000075 ORTHO05D000073 1.6e-06 56.6 64 51.6
FAN14G4465 Fragaria x ananassa HOM05D000075 ORTHO05D000073 1.6e-06 56.6 64 51.6
Oeu018332.1 Olea europaea HOM05D000075 ORTHO05D000073 1.6e-06 56.6 59 49.2
QL07p028209 Quercus lobata HOM05D000075 ORTHO05D000073 1.6e-06 56.6 63 46.0
QL07p028231 Quercus lobata HOM05D000075 ORTHO05D000073 1.6e-06 56.6 63 46.0
Eucgr.L03520 Eucalyptus grandis HOM05D000075 ORTHO05D000073 2.1e-06 56.2 62 46.8
VMungo0720G1547 Vigna mungo HOM05D000075 ORTHO05D000073 2.1e-06 56.2 81 38.3
Sopen09g006310 Solanum pennellii HOM05D000075 ORTHO05D000073 2.7e-06 55.8 75 40.0
GSVIVG01034062001 Vitis vinifera HOM05D000075 ORTHO05D000073 2.7e-06 55.8 62 46.8
Cpa.g.sc73.68 Carica papaya HOM05D000075 ORTHO05D000073 3.6e-06 55.5 77 44.2
AUR62025473 Chenopodium quinoa HOM05D000075 ORTHO05D000073 3.6e-06 55.5 61 42.6
PGSC0003DMG400002165 Solanum tuberosum HOM05D000075 ORTHO05D000073 3.6e-06 55.5 70 48.6
Atru.chr8.2099 Acer truncatum HOM05D000075 ORTHO05D000073 4.7e-06 55.1 60 48.3
Cfa017297 Carpinus fangiana HOM05D000075 ORTHO05D000073 4.7e-06 55.1 76 39.5
DCAR_028804 Daucus carota HOM05D000075 ORTHO05D000073 4.7e-06 55.1 65 49.2
MD04G1139400 Malus domestica HOM05D000075 ORTHO05D000073 4.7e-06 55.1 46 58.7
Solyc09g011540.2 Solanum lycopersicum HOM05D000075 ORTHO05D000073 4.7e-06 55.1 75 40.0
Eucgr.K03024 Eucalyptus grandis HOM05D000075 ORTHO05D000073 6.1e-06 54.7 62 46.8
Prupe.6G265000 Prunus persica HOM05D000075 ORTHO05D000073 6.1e-06 54.7 60 48.3
QL09p054637 Quercus lobata HOM05D000075 ORTHO05D000073 6.1e-06 54.7 65 43.1
Cpa.g.sc56.64 Carica papaya HOM05D000075 ORTHO05D000073 8.0e-06 54.3 68 42.6
Eucgr.K03030 Eucalyptus grandis HOM05D000075 ORTHO05D000073 8.0e-06 54.3 62 46.8
Lalb_Chr08g0242301 Lupinus albus HOM05D000075 ORTHO05D000073 8.0e-06 54.3 61 47.5
QL07p028270 Quercus lobata HOM05D000075 ORTHO05D000073 8.0e-06 54.3 49 55.1


User provided reference genes

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