Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 5.8e-76 288.5 296 100.0
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 3.9e-40 169.5 321 68.5
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 2.0e-39 167.2 323 74.0
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 4.4e-39 166.0 324 75.6
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.3e-38 164.5 318 63.5
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.0e-35 154.8 321 63.2
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 3.7e-30 136.3 269 61.3
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 7.7e-28 128.6 259 57.1
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.3e-27 127.9 309 57.0
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 1.3e-27 127.9 260 62.7
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 2.2e-27 127.1 259 56.8
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 5.0e-27 125.9 274 61.3
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 6.5e-27 125.6 265 58.9
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 1.1e-26 124.8 259 64.5
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 2.5e-26 123.6 259 50.6
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 3.2e-26 123.2 263 61.2
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 5.5e-26 122.5 263 61.6
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 5.5e-26 122.5 283 59.7
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 1.2e-25 121.3 264 59.1
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.6e-25 120.9 260 56.9
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 2.1e-25 120.6 261 60.9
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 4.7e-25 119.4 281 60.9
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 4.7e-25 119.4 283 59.4
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 4.7e-25 119.4 281 60.9
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 6.1e-25 119.0 213 44.6
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 8.0e-25 118.6 310 54.2
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 8.0e-25 118.6 254 61.0
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 1.4e-24 117.9 255 58.0
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 1.4e-24 117.9 270 56.3
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.4e-24 117.9 263 61.2
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.8e-24 117.5 283 59.4
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 4.0e-24 116.3 263 60.1
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 6.8e-24 115.5 274 58.0
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.2e-23 114.8 265 60.4
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.2e-23 114.8 261 57.9
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 1.5e-23 114.4 282 53.9
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.5e-23 114.4 262 59.9
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 2.0e-23 114.0 263 54.8
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 2.0e-23 114.0 263 54.8
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.0e-23 114.0 265 59.2
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 2.0e-23 114.0 265 59.2
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 2.6e-23 113.6 265 55.5
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 4.4e-23 112.8 265 59.6
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 5.7e-23 112.5 264 62.9
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 5.7e-23 112.5 276 56.9
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 5.7e-23 112.5 263 59.3
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 7.5e-23 112.1 261 54.4
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 1.3e-22 111.3 289 55.0
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 2.8e-22 110.2 271 56.8
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 2.8e-22 110.2 274 56.6
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 3.7e-22 109.8 259 55.6
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 3.7e-22 109.8 262 47.7
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 3.7e-22 109.8 276 58.0
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 3.7e-22 109.8 256 58.6
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 4.8e-22 109.4 296 53.4
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 6.3e-22 109.0 258 62.0
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 6.3e-22 109.0 276 55.8
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 6.3e-22 109.0 271 56.8
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 6.3e-22 109.0 256 58.6
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 6.3e-22 109.0 260 58.5
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 1.8e-21 107.5 266 57.1
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 3.1e-21 106.7 284 53.2
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 5.4e-21 105.9 257 57.6
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 9.1e-21 105.1 173 42.8
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 9.1e-21 105.1 263 55.5
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 9.1e-21 105.1 250 66.0
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 9.1e-21 105.1 225 62.7
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 1.2e-20 104.8 263 46.0
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 1.6e-20 104.4 179 41.9
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 1.6e-20 104.4 312 51.6
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 1.6e-20 104.4 268 57.8
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 2.0e-20 104.0 261 57.9
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 2.7e-20 103.6 178 44.4
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 2.7e-20 103.6 275 56.4
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 4.5e-20 102.8 294 62.2
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 4.5e-20 102.8 265 61.1
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 7.7e-20 102.1 254 53.9
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 1.0e-19 101.7 176 40.9
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 2.3e-19 100.5 267 56.2
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 3.8e-19 99.8 251 59.0
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 6.5e-19 99.0 260 52.7
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 6.5e-19 99.0 298 51.3
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 8.6e-19 98.6 249 57.8
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 1.5e-18 97.8 253 50.2
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 1.9e-18 97.4 277 59.9
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 1.9e-18 97.4 266 59.4
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 2.5e-18 97.1 253 59.3
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 2.5e-18 97.1 258 57.0
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 2.5e-18 97.1 264 57.6
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 3.2e-18 96.7 238 57.6
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 4.2e-18 96.3 271 55.0
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 5.5e-18 95.9 251 46.6
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 5.5e-18 95.9 275 50.5
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 1.2e-17 94.7 175 42.3
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 1.2e-17 94.7 270 60.0
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 2.1e-17 94.0 253 52.2
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 2.1e-17 94.0 253 52.2
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 2.8e-17 93.6 223 36.3
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 3.6e-17 93.2 256 52.7
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 3.6e-17 93.2 253 44.3
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 3.6e-17 93.2 253 44.3
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 8.0e-17 92.0 261 55.2
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.0e-16 91.7 253 56.1
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 1.8e-16 90.9 267 54.3
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 2.3e-16 90.5 183 41.0
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 3.0e-16 90.1 263 54.4
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 4.0e-16 89.7 256 56.2
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 6.8e-16 89.0 260 56.5
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 6.8e-16 89.0 260 58.8
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 6.8e-16 89.0 260 56.5
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 6.8e-16 89.0 260 56.5
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 8.8e-16 88.6 262 53.4
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 1.2e-15 88.2 293 58.0
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 1.5e-15 87.8 265 51.7
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 2.0e-15 87.4 261 55.6
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 2.6e-15 87.0 289 52.2
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 2.6e-15 87.0 260 59.6
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 2.6e-15 87.0 280 56.1
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 3.4e-15 86.7 262 62.2
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 3.4e-15 86.7 263 54.8
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 3.4e-15 86.7 173 41.0
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 4.4e-15 86.3 264 63.3
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 4.4e-15 86.3 257 30.4
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 5.7e-15 85.9 273 52.0
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 5.7e-15 85.9 256 60.5
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 7.5e-15 85.5 259 56.4
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 9.8e-15 85.1 262 54.2
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 1.3e-14 84.7 261 54.8
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 2.8e-14 83.6 259 60.2
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 4.9e-14 82.8 262 54.2
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 4.9e-14 82.8 319 33.9
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 8.3e-14 82.0 123 90.2
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 1.1e-13 81.6 291 55.7
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 1.8e-13 80.9 277 61.7
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 2.4e-13 80.5 183 42.6
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 2.4e-13 80.5 228 34.6
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 3.1e-13 80.1 215 62.8
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 4.1e-13 79.7 267 55.8
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 4.1e-13 79.7 272 41.2
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.2e-12 78.2 253 50.2
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 1.2e-12 78.2 254 54.7
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 3.5e-12 76.6 270 55.9
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 1.0e-11 75.1 213 39.0
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.0e-11 75.1 171 42.1
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 5.0e-11 72.8 173 37.6
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 8.6e-11 72.0 146 38.4
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 1.9e-10 70.9 285 47.4
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 2.5e-10 70.5 264 38.6
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 3.3e-10 70.1 172 33.7
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 2.8e-09 67.0 257 37.4
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 4.7e-09 66.2 284 55.3
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 6.1e-09 65.9 120 87.5
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 1.0e-08 65.1 251 49.4
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 4.0e-08 63.2 120 45.8
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 4.0e-08 63.2 274 50.0
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 5.2e-08 62.8 175 38.3
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 5.2e-08 62.8 255 47.1
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 1.2e-07 61.6 39 82.1
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 1.5e-07 61.2 118 47.5
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 2.6e-07 60.5 62 59.7
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 3.4e-07 60.1 37 81.1
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 5.7e-07 59.3 36 77.8
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 7.5e-07 58.9 59 61.0
ECA236G0930 Erigeron canadensis HOM05D004060 ORTHO05D001964 1.7e-06 57.8 129 77.5
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 4.9e-06 56.2 252 47.2


User provided reference genes

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