Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 5.2e-274 947.2 511 100.0
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 3.5e-113 412.9 381 59.8
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 2.5e-111 406.8 359 61.6
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 1.9e-103 380.6 424 54.5
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 3.9e-96 356.3 433 50.8
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 7.4e-95 352.1 400 52.8
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 4.8e-94 349.4 459 49.5
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 5.3e-93 345.9 290 62.1
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 9.1e-93 345.1 449 48.1
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 1.0e-91 341.7 392 52.0
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 2.9e-91 340.1 391 53.7
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 3.2e-90 336.7 292 61.6
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 3.6e-89 333.2 443 47.6
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 6.1e-89 332.4 430 49.3
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 3.9e-88 329.7 312 56.1
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 3.9e-88 329.7 432 48.4
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 5.1e-88 329.3 440 49.3
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 1.1e-87 328.2 431 44.5
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 7.4e-87 325.5 401 49.9
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 7.4e-87 325.5 447 46.8
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 6.3e-86 322.4 463 46.2
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.8e-85 320.9 404 49.5
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 3.4e-84 316.6 361 49.9
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 5.9e-84 315.8 466 46.1
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 7.7e-84 315.5 478 45.0
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 7.7e-84 315.5 402 48.8
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 1.0e-83 315.1 454 45.2
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 1.7e-83 314.3 436 45.2
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.9e-83 313.5 402 48.8
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 2.9e-83 313.5 458 45.6
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 6.5e-83 312.4 451 44.3
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 1.9e-82 310.8 392 47.7
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 2.5e-82 310.5 400 48.0
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 3.2e-82 310.1 414 47.3
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 5.5e-82 309.3 397 47.6
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.6e-81 307.8 486 43.0
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 2.7e-81 307.0 433 43.6
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 1.0e-80 305.1 434 43.8
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 3.0e-80 303.5 341 50.7
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 5.2e-80 302.8 393 46.6
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 6.7e-80 302.4 452 46.0
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 1.1e-79 301.6 418 45.5
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 1.5e-79 301.2 494 40.9
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 5.7e-79 299.3 408 43.9
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 7.4e-79 298.9 410 43.2
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.3e-78 298.1 405 46.4
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 2.8e-78 297.0 513 40.9
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 2.8e-78 297.0 439 44.4
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 3.7e-78 296.6 402 46.3
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 1.1e-77 295.0 481 41.6
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 1.1e-77 295.0 397 45.1
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.4e-77 294.7 411 46.2
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.4e-77 294.7 381 46.7
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 2.4e-77 293.9 481 42.6
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 2.4e-77 293.9 380 46.1
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 3.1e-77 293.5 461 41.2
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 7.0e-77 292.4 411 46.0
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 9.1e-77 292.0 415 43.1
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.6e-76 291.2 367 46.0
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 4.5e-76 289.7 350 51.1
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.3e-75 288.1 481 41.2
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 3.8e-75 286.6 464 41.4
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 6.5e-75 285.8 480 40.6
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 2.5e-74 283.9 369 46.3
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 3.2e-74 283.5 410 45.1
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 4.2e-74 283.1 381 48.0
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 9.4e-74 282.0 481 39.9
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 1.2e-73 281.6 399 45.4
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.0e-72 278.5 488 38.7
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 1.4e-72 278.1 481 39.1
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.8e-72 277.7 295 51.9
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 3.0e-72 276.9 486 38.7
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 8.8e-72 275.4 487 38.2
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 2.0e-71 274.2 374 44.4
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 2.0e-71 274.2 412 42.7
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 2.6e-71 273.9 400 44.0
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 2.6e-71 273.9 416 42.8
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 2.6e-71 273.9 412 42.7
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 2.6e-71 273.9 391 41.4
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 4.4e-71 273.1 399 42.1
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 4.4e-71 273.1 399 42.1
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 4.4e-71 273.1 399 42.1
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 1.7e-70 271.2 390 44.9
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 2.2e-70 270.8 474 39.5
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 2.2e-70 270.8 330 53.3
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 2.8e-70 270.4 388 43.6
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.1e-69 268.5 366 44.0
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.4e-69 268.1 368 44.6
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 1.8e-69 267.7 308 49.4
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 2.0e-68 264.2 289 52.2
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 7.7e-68 262.3 367 44.1
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 7.7e-68 262.3 408 43.1
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 2.2e-67 260.8 385 43.6
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 2.9e-67 260.4 308 48.7
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 3.8e-67 260.0 351 43.0
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 3.8e-67 260.0 351 43.0
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 3.8e-67 260.0 351 43.0
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 5.0e-67 259.6 445 41.3
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 3.2e-66 256.9 398 42.7
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 3.2e-66 256.9 308 48.4
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 5.5e-66 256.1 371 41.2
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 5.5e-66 256.1 352 45.5
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 7.2e-66 255.8 509 35.4
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 2.1e-65 254.2 350 42.6
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 3.6e-65 253.4 324 44.1
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 1.0e-64 251.9 358 44.4
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 1.4e-64 251.5 385 41.0
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 2.3e-64 250.8 305 47.9
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 1.2e-63 248.4 292 51.7
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 1.5e-63 248.1 328 43.9
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 4.4e-63 246.5 447 40.3
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 8.3e-62 242.3 371 40.7
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 1.1e-61 241.9 431 40.4
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.8e-61 241.1 367 42.5
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 3.1e-61 240.4 415 39.5
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 4.1e-61 240.0 394 40.6
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 4.1e-61 240.0 394 40.6
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 5.4e-61 239.6 348 42.8
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 9.1e-61 238.8 401 40.9
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 2.9e-59 233.8 423 38.8
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 3.8e-59 233.4 321 40.8
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 2.1e-57 227.6 362 39.5
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 8.0e-57 225.7 360 40.6
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 3.0e-56 223.8 277 44.8
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 4.0e-56 223.4 293 46.8
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 7.5e-55 219.2 322 44.1
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 1.1e-53 215.3 303 44.2
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 3.1e-53 213.8 293 44.7
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 4.1e-53 213.4 335 41.2
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 4.5e-52 209.9 303 43.2
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 1.7e-51 208.0 376 39.9
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 6.6e-51 206.1 259 44.0
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.5e-50 204.9 374 35.8
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 2.5e-50 204.1 307 42.0
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 5.6e-50 203.0 306 42.2
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 5.2e-48 196.4 373 35.1
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.4e-45 187.6 472 32.2
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.4e-45 187.6 472 32.2
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 4.1e-45 186.8 176 57.4
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 4.6e-44 183.3 385 36.6
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 7.8e-44 182.6 270 41.9
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.7e-33 146.7 227 42.3
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 6.2e-33 146.4 344 31.1
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.4e-31 140.6 298 36.6
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 5.8e-31 139.8 170 44.1
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.7e-30 138.3 197 41.1
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.7e-30 138.3 410 28.0
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.7e-28 131.0 219 38.8
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.5e-26 125.2 335 29.3
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 2.5e-26 124.4 288 33.3
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 9.5e-26 122.5 362 30.7
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 4.0e-24 117.1 336 31.0
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 1.3e-22 112.1 313 30.0
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 4.9e-22 110.2 180 43.3
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 8.4e-22 109.4 210 33.8
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 1.1e-18 99.0 131 43.5
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 9.6e-18 95.9 181 35.9
arahy.Tifrunner.gnm1.ann1.60YYL0 Arachis hypogaea HOM05D010190 ORTHO05D009823 5.4e-13 80.1 87 52.9
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 1.2e-12 79.0 166 36.7
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.7e-12 77.8 80 52.5
Sed0000469 Sechium edule HOM05D010190 ORTHO05D009823 6.0e-12 76.6 90 54.4
Sed0006309 Sechium edule HOM05D010190 ORTHO05D009823 6.0e-12 76.6 90 54.4
Atru.chr9.2550 Acer truncatum HOM05D010190 ORTHO05D009823 7.8e-12 76.3 93 51.6
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 3.0e-11 74.3 74 56.8
Sed0014465 Sechium edule HOM05D010190 ORTHO05D004271 3.9e-11 73.9 90 53.3
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 4.3e-10 70.5 93 43.0
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 9.6e-10 69.3 53 69.8
Phvul.009G038333 Phaseolus vulgaris HOM05D007952 ORTHO05D009823 6.2e-09 66.6 43 76.7
Nn031s41604 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.4e-08 64.7 43 74.4
Nn233s45560 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.4e-08 64.7 43 74.4
Nn241s45689 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.4e-08 64.7 43 74.4
Nn6g33131 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.4e-08 64.7 43 74.4
Nn6g33484 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.4e-08 64.7 43 74.4
Nn1g08228 Nelumbo nucifera HOM05D007952 ORTHO05D009823 1.5e-07 62.0 43 72.1
Atru.chr13.2454 Acer truncatum HOM05D007952 ORTHO05D009823 2.0e-07 61.6 41 75.6
arahy.Tifrunner.gnm1.ann1.0845WK Arachis hypogaea HOM05D007952 ORTHO05D009823 2.0e-07 61.6 41 75.6
arahy.Tifrunner.gnm1.ann1.88RRM9 Arachis hypogaea HOM05D007952 ORTHO05D009823 2.0e-07 61.6 41 75.6
arahy.Tifrunner.gnm1.ann1.HDQ4NC Arachis hypogaea HOM05D007952 ORTHO05D009823 2.6e-07 61.2 41 73.2
CSS0039937 Camellia sinensis var. sinensis HOM05D007952 ORTHO05D009823 1.3e-06 58.9 42 71.4
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 1.7e-06 58.5 41 73.2
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 2.2e-06 58.2 53 50.9


User provided reference genes

Program Settings