Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G676.2 Capsicum annuum HOM05D000069 ORTHO05D015030 9.1e-59 229.9 110 100.0
CAN.G676.5 Capsicum annuum HOM05D000069 ORTHO05D015030 2.5e-56 221.9 110 96.4
CAN.G2032.2 Capsicum annuum HOM05D003836 ORTHO05D004556 8.3e-28 127.1 80 78.8
CAN.G676.6 Capsicum annuum HOM05D000069 ORTHO05D015030 8.3e-28 127.1 95 70.5
CAN.G2419.1 Capsicum annuum HOM05D000069 ORTHO05D015030 3.3e-24 115.2 56 94.6
PGSC0003DMG400040839 Solanum tuberosum HOM05D000069 ORTHO05D015030 3.5e-10 68.6 56 53.6
Ah.08g209280 Amaranthus hybridus HOM05D000069 ORTHO05D000060 6.6e-09 64.3 42 57.1
COL.COLO4_17495 Corchorus olitorius HOM05D000069 ORTHO05D000060 4.3e-08 61.6 39 64.1
PGSC0003DMG400003158 Solanum tuberosum HOM05D000329 ORTHO05D002813 5.6e-08 61.2 56 50.0
HanXRQChr04g0100701 Helianthus annuus HOM05D000069 ORTHO05D012226 2.1e-07 59.3 42 57.1
Phvul.006G176920 Phaseolus vulgaris HOM05D000069 ORTHO05D000060 2.1e-07 59.3 41 56.1
RcHm_v2.0_Chr3g0455051 Rosa chinensis HOM05D000069 ORTHO05D000060 3.6e-07 58.5 39 61.5
RcHm_v2.0_Chr3g0455061 Rosa chinensis HOM05D000069 ORTHO05D000060 3.6e-07 58.5 39 61.5
Nn8g39524 Nelumbo nucifera HOM05D000069 ORTHO05D008115 4.8e-07 58.2 45 55.6
EL10Ac8g20523 Beta vulgaris HOM05D000069 ORTHO05D000060 6.2e-07 57.8 57 45.6
Hund16362 Selenicereus undatus HOM05D000069 ORTHO05D000060 6.2e-07 57.8 37 56.8
Prupe.6G308700 Prunus persica HOM05D000069 ORTHO05D000060 8.1e-07 57.4 37 59.5
AUR62043331 Chenopodium quinoa HOM05D000069 ORTHO05D000060 1.1e-06 57.0 52 48.1
FvH4_6g06040 Fragaria vesca HOM05D000069 ORTHO05D000060 1.1e-06 57.0 38 60.5
HanXRQChr04g0095351 Helianthus annuus HOM05D000069 ORTHO05D012226 1.1e-06 57.0 38 60.5
HanXRQChr04g0095381 Helianthus annuus HOM05D000069 ORTHO05D012226 1.1e-06 57.0 38 60.5
HanXRQChr12g0357221 Helianthus annuus HOM05D000069 ORTHO05D012226 1.1e-06 57.0 38 60.5
AUR62043330 Chenopodium quinoa HOM05D000069 ORTHO05D000060 1.4e-06 56.6 52 48.1
Gorai.007G216900 Gossypium raimondii HOM05D000069 ORTHO05D000060 1.4e-06 56.6 34 55.9
HanXRQChr04g0096921 Helianthus annuus HOM05D000069 ORTHO05D012226 1.4e-06 56.6 38 57.9
HanXRQChr04g0096991 Helianthus annuus HOM05D000069 ORTHO05D012226 1.4e-06 56.6 38 57.9
HanXRQChr04g0100611 Helianthus annuus HOM05D000069 ORTHO05D000060 1.4e-06 56.6 38 57.9
HanXRQChr04g0100641 Helianthus annuus HOM05D000069 ORTHO05D012226 1.4e-06 56.6 38 57.9
HanXRQChr04g0100681 Helianthus annuus HOM05D000069 ORTHO05D012226 1.4e-06 56.6 38 57.9
HanXRQChr04g0100691 Helianthus annuus HOM05D000069 ORTHO05D012226 1.4e-06 56.6 38 57.9
HanXRQChr04g0100711 Helianthus annuus HOM05D000069 ORTHO05D012226 1.4e-06 56.6 38 57.9
HanXRQChr04g0100721 Helianthus annuus HOM05D000069 ORTHO05D012226 1.4e-06 56.6 38 57.9
HanXRQChr04g0100811 Helianthus annuus HOM05D000069 ORTHO05D012226 1.4e-06 56.6 38 57.9
HanXRQChr04g0100901 Helianthus annuus HOM05D000069 ORTHO05D000060 1.4e-06 56.6 38 57.9
HanXRQChr04g0100981 Helianthus annuus HOM05D000069 ORTHO05D000060 1.4e-06 56.6 38 57.9
HanXRQChr04g0101001 Helianthus annuus HOM05D000069 ORTHO05D012226 1.4e-06 56.6 38 57.9
HanXRQChr04g0101021 Helianthus annuus HOM05D000069 ORTHO05D000060 1.4e-06 56.6 38 57.9
HanXRQChr04g0101121 Helianthus annuus HOM05D000069 ORTHO05D012226 1.4e-06 56.6 38 57.9
HanXRQChr04g0101131 Helianthus annuus HOM05D000069 ORTHO05D012226 1.4e-06 56.6 38 57.9
HanXRQChr04g0101371 Helianthus annuus HOM05D000069 ORTHO05D012226 1.4e-06 56.6 38 57.9
HanXRQChr04g0101381 Helianthus annuus HOM05D000069 ORTHO05D012226 1.4e-06 56.6 38 57.9
HanXRQChr04g0101391 Helianthus annuus HOM05D000069 ORTHO05D012226 1.4e-06 56.6 38 57.9
HanXRQChr04g0101461 Helianthus annuus HOM05D000069 ORTHO05D000060 1.4e-06 56.6 38 57.9
HanXRQChr04g0101481 Helianthus annuus HOM05D000069 ORTHO05D012226 1.4e-06 56.6 38 57.9
HanXRQChr11g0327911 Helianthus annuus HOM05D000069 ORTHO05D012226 1.4e-06 56.6 38 57.9
COL.COLO4_17499 Corchorus olitorius HOM05D000069 ORTHO05D000060 1.8e-06 56.2 34 61.8
Duzib235G0820 Durio zibethinus HOM05D000069 ORTHO05D000060 1.8e-06 56.2 44 47.7
FAN05G1716 Fragaria x ananassa HOM05D000069 ORTHO05D000060 1.8e-06 56.2 38 60.5
FAN05G2660 Fragaria x ananassa HOM05D000069 ORTHO05D000060 1.8e-06 56.2 38 60.5
FAN16G1607 Fragaria x ananassa HOM05D000069 ORTHO05D000060 1.8e-06 56.2 41 53.7
Pp3c8_20370 Physcomitrium patens HOM05D000069 ORTHO05D000060 1.8e-06 56.2 34 58.8
RcHm_v2.0_Chr3g0455011 Rosa chinensis HOM05D000069 ORTHO05D000060 1.8e-06 56.2 39 56.4
ECA247G1323 Erigeron canadensis HOM05D000069 ORTHO05D002266 2.4e-06 55.8 34 61.8
Gohir.D11G304400 Gossypium hirsutum HOM05D000069 ORTHO05D000060 2.4e-06 55.8 34 61.8
Gohir.D11G304800 Gossypium hirsutum HOM05D000069 ORTHO05D000060 2.4e-06 55.8 34 61.8
Nitab4.5_0000078g0420 Nicotiana tabacum HOM05D000069 ORTHO05D015030 2.4e-06 55.8 45 51.1
EL10Ac8g20524 Beta vulgaris HOM05D000069 ORTHO05D000060 3.1e-06 55.5 40 55.0
COL.COLO4_17497 Corchorus olitorius HOM05D000069 ORTHO05D000060 3.1e-06 55.5 34 58.8
Gohir.A04G044200 Gossypium hirsutum HOM05D000069 ORTHO05D000060 3.1e-06 55.5 37 56.8
Gohir.D05G339066 Gossypium hirsutum HOM05D000069 ORTHO05D000060 3.1e-06 55.5 37 56.8
Gorai.007G329600 Gossypium raimondii HOM05D000069 ORTHO05D000060 3.1e-06 55.5 34 58.8
Gorai.009G364500 Gossypium raimondii HOM05D000069 ORTHO05D000060 3.1e-06 55.5 37 56.8
Hma1.2p1_0785F.1_g217510 Hydrangea macrophylla HOM05D000069 ORTHO05D015030 3.1e-06 55.5 56 46.4
Lsat_1_v5_gn_3_29981 Lactuca sativa HOM05D000069 ORTHO05D000060 3.1e-06 55.5 43 46.5
SGA_v2.0_scaffold16G07678 Striga asiatica HOM05D000069 ORTHO05D000060 3.1e-06 55.5 38 57.9
CSS0005549 Camellia sinensis var. sinensis HOM05D000069 ORTHO05D000060 4.0e-06 55.1 53 43.4
COL.COLO4_31283 Corchorus olitorius HOM05D000069 ORTHO05D008115 4.0e-06 55.1 36 55.6
FAN21G0208 Fragaria x ananassa HOM05D000069 ORTHO05D035725 4.0e-06 55.1 57 38.6
Gohir.D12G071300 Gossypium hirsutum HOM05D000069 ORTHO05D000060 4.0e-06 55.1 34 55.9
Manes.13G119500 Manihot esculenta HOM05D000069 ORTHO05D000060 4.0e-06 55.1 48 50.0
Nitab4.5_0000043g0030 Nicotiana tabacum HOM05D000069 ORTHO05D015030 4.0e-06 55.1 56 50.0
Pp3c23_20820 Physcomitrium patens HOM05D000069 ORTHO05D000060 4.0e-06 55.1 37 54.1
GSVIVG01009796001 Vitis vinifera HOM05D000069 ORTHO05D000060 4.0e-06 55.1 38 60.5
Ah.04g154870 Amaranthus hybridus HOM05D000069 ORTHO05D000060 5.3e-06 54.7 56 37.5
AL5G21990 Arabidopsis lyrata HOM05D000069 ORTHO05D013972 5.3e-06 54.7 43 51.2
BcaC07g37034 Brassica carinata HOM05D000069 ORTHO05D000060 5.3e-06 54.7 46 50.0
A08p03850 Brassica napus HOM05D000069 ORTHO05D000060 5.3e-06 54.7 46 50.0
BolC8t47196H Brassica oleracea HOM05D000069 ORTHO05D000060 5.3e-06 54.7 46 50.0
BraA08t32414Z Brassica rapa HOM05D000069 ORTHO05D000060 5.3e-06 54.7 46 50.0
AUR62031185 Chenopodium quinoa HOM05D000069 ORTHO05D000060 5.3e-06 54.7 41 51.2
COL.COLO4_02899 Corchorus olitorius HOM05D000069 ORTHO05D000060 5.3e-06 54.7 34 58.8
CsaV3_2G025050 Cucumis sativus L. HOM05D000069 ORTHO05D000060 5.3e-06 54.7 34 61.8
Gohir.D11G202300 Gossypium hirsutum HOM05D000069 ORTHO05D000060 5.3e-06 54.7 34 52.9
HanXRQChr04g0100671 Helianthus annuus HOM05D000069 ORTHO05D000060 5.3e-06 54.7 38 55.3
PGR042G1099 Punica granatum HOM05D000069 ORTHO05D000060 5.3e-06 54.7 39 56.4
Carub.0005s0972 Capsella rubella HOM05D000069 ORTHO05D013972 6.9e-06 54.3 43 51.2
Ciclev10001723m.g Citrus clementina HOM05D000069 ORTHO05D000060 6.9e-06 54.3 39 53.8
Ciclev10005342m.g Citrus clementina HOM05D000069 ORTHO05D000060 6.9e-06 54.3 39 53.8
Duzib147G0191 Durio zibethinus HOM05D000069 ORTHO05D000060 6.9e-06 54.3 34 55.9
Eucgr.D00513 Eucalyptus grandis HOM05D000069 ORTHO05D000060 6.9e-06 54.3 39 51.3
Gohir.A11G196400 Gossypium hirsutum HOM05D000069 ORTHO05D000060 6.9e-06 54.3 34 52.9
Gohir.D05G338733 Gossypium hirsutum HOM05D000069 ORTHO05D000060 6.9e-06 54.3 34 61.8
Gorai.009G363700 Gossypium raimondii HOM05D000069 ORTHO05D000060 6.9e-06 54.3 34 61.8
Lalb_Chr11g0073621 Lupinus albus HOM05D000069 ORTHO05D000060 6.9e-06 54.3 37 59.5
QL08p041382 Quercus lobata HOM05D000069 ORTHO05D000060 6.9e-06 54.3 42 50.0
RcHm_v2.0_Chr5g0010401 Rosa chinensis HOM05D000069 ORTHO05D000060 6.9e-06 54.3 38 55.3
Thecc.06G172500 Theobroma cacao HOM05D000069 ORTHO05D000060 6.9e-06 54.3 35 54.3
ATR0010G001 Amborella trichopoda HOM05D000069 ORTHO05D000060 9.0e-06 53.9 34 55.9
AL5G29090 Arabidopsis lyrata HOM05D000069 ORTHO05D000060 9.0e-06 53.9 37 56.8
AT3G43960 Arabidopsis thaliana HOM05D000069 ORTHO05D013972 9.0e-06 53.9 70 40.0
EL10Ac9g22311 Beta vulgaris HOM05D000069 ORTHO05D000060 9.0e-06 53.9 38 52.6
Carub.0005s1574 Capsella rubella HOM05D000069 ORTHO05D000060 9.0e-06 53.9 37 56.8
AUR62043329 Chenopodium quinoa HOM05D000069 ORTHO05D000060 9.0e-06 53.9 44 45.5
COL.COLO4_17500 Corchorus olitorius HOM05D000069 ORTHO05D000060 9.0e-06 53.9 35 62.9
Haze_27204 Corylus avellana HOM05D000069 ORTHO05D044805 9.0e-06 53.9 45 46.7
Haze_27224 Corylus avellana HOM05D000069 ORTHO05D015629 9.0e-06 53.9 40 57.5
MELO3C010702.2 Cucumis melo HOM05D000069 ORTHO05D000060 9.0e-06 53.9 34 58.8
ECA247G1863 Erigeron canadensis HOM05D000069 ORTHO05D012226 9.0e-06 53.9 38 52.6
Eucgr.D00515 Eucalyptus grandis HOM05D000069 ORTHO05D000060 9.0e-06 53.9 44 50.0
FvH4_7g32110 Fragaria vesca HOM05D000069 ORTHO05D025459 9.0e-06 53.9 45 48.9
FAN06G4952 Fragaria x ananassa HOM05D000069 ORTHO05D025459 9.0e-06 53.9 45 48.9
Gohir.A04G044300 Gossypium hirsutum HOM05D000069 ORTHO05D000060 9.0e-06 53.9 35 54.3
Gohir.D05G338900 Gossypium hirsutum HOM05D000069 ORTHO05D000060 9.0e-06 53.9 35 57.1
Gorai.009G364200 Gossypium raimondii HOM05D000069 ORTHO05D000060 9.0e-06 53.9 35 57.1
Gorai.009G364300 Gossypium raimondii HOM05D000069 ORTHO05D000060 9.0e-06 53.9 35 54.3
HanXRQChr02g0035331 Helianthus annuus HOM05D000069 ORTHO05D000060 9.0e-06 53.9 45 48.9
HanXRQChr11g0329091 Helianthus annuus HOM05D000069 ORTHO05D000060 9.0e-06 53.9 34 58.8
PGR004G0379 Punica granatum HOM05D000069 ORTHO05D000060 9.0e-06 53.9 34 58.8
Sed0002162 Sechium edule HOM05D000069 ORTHO05D000060 9.0e-06 53.9 37 54.1


User provided reference genes

Program Settings