Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G676.12 Capsicum annuum HOM05D007260 ORTHO05D009149 9.0e-119 430.3 216 100.0
PGSC0003DMG401012695 Solanum tuberosum HOM05D007260 ORTHO05D009149 1.4e-87 326.6 205 77.6
Nitab4.5_0000826g0300 Nicotiana tabacum HOM05D007260 ORTHO05D009149 9.1e-87 323.9 208 76.9
Nitab4.5_0006870g0020 Nicotiana tabacum HOM05D007260 ORTHO05D009149 2.0e-86 322.8 208 76.9
Sopen04g008360 Solanum pennellii HOM05D007260 ORTHO05D009149 3.4e-81 305.4 205 74.1
Solyc04g016250.3 Solanum lycopersicum HOM05D007260 ORTHO05D009149 8.6e-61 237.7 170 71.8
Peaxi162Scf00130g00720 Petunia axillaris HOM05D007260 ORTHO05D009149 5.8e-57 224.9 139 79.1
Oeu023130.1 Olea europaea HOM05D007260 ORTHO05D009149 1.9e-55 219.9 208 56.2
Migut.J01731 Erythranthe guttata HOM05D007260 ORTHO05D009149 4.6e-54 215.3 207 53.6
MSTRG.19844 Avicennia marina HOM05D007260 ORTHO05D009149 1.3e-53 213.8 206 53.9
SalBow6G0663 Salvia bowleyana HOM05D007260 ORTHO05D009149 2.3e-53 213.0 199 55.8
SalBow6G2074 Salvia bowleyana HOM05D007260 ORTHO05D009149 2.3e-53 213.0 199 55.8
vmacro21973 Vaccinium macrocarpon HOM05D007260 ORTHO05D009149 8.6e-53 211.1 201 54.2
QL07p003043 Quercus lobata HOM05D007260 ORTHO05D009149 5.6e-52 208.4 206 54.9
TWI74G0992 Tripterygium wilfordii HOM05D007260 ORTHO05D009149 7.3e-52 208.0 206 53.4
CiPaw.10G035100 Carya illinoinensis HOM05D007260 ORTHO05D009149 9.5e-52 207.6 206 52.4
Lj1C1126T6 Lonicera japonica HOM05D007260 ORTHO05D009149 1.6e-51 206.8 206 53.4
SGA_v2.0_scaffold105G30380 Striga asiatica HOM05D007260 ORTHO05D009149 6.2e-51 204.9 206 53.4
GSVIVG01033239001 Vitis vinifera HOM05D007260 ORTHO05D009149 1.2e-49 200.7 207 53.1
Cfa016789 Carpinus fangiana HOM05D007260 ORTHO05D009149 5.8e-49 198.4 200 52.0
CANSAT80G0389 Cannabis sativa HOM05D007260 ORTHO05D009149 6.4e-48 194.9 211 48.8
Thecc.05G151300 Theobroma cacao HOM05D007260 ORTHO05D009149 4.1e-47 192.2 206 50.5
CANSAT80G1528 Cannabis sativa HOM05D007260 ORTHO05D009149 5.4e-47 191.8 211 47.4
Cpa.g.sc182.9 Carica papaya HOM05D007260 ORTHO05D009149 5.4e-47 191.8 202 52.0
MD14G1076800 Malus domestica HOM05D007260 ORTHO05D009149 1.2e-46 190.7 216 48.6
Ciclev10005732m.g Citrus clementina HOM05D007260 ORTHO05D009149 2.7e-46 189.5 205 51.2
Sabra06G0031900 Salix brachista HOM05D007260 ORTHO05D009149 2.7e-46 189.5 203 51.2
TAR633G2662 Trochodendron aralioides HOM05D007260 ORTHO05D009149 6.0e-46 188.3 203 51.7
Gohir.A02G107109 Gossypium hirsutum HOM05D007260 ORTHO05D009149 7.8e-46 188.0 206 49.5
Eucgr.K01719 Eucalyptus grandis HOM05D007260 ORTHO05D009149 1.7e-45 186.8 202 48.0
Gorai.003G087400 Gossypium raimondii HOM05D007260 ORTHO05D009149 1.7e-45 186.8 206 49.0
Potri.006G046350 Populus trichocarpa HOM05D007260 ORTHO05D009149 2.3e-45 186.4 203 50.7
Rhsim03G0028400 Rhododendron simsii HOM05D007260 ORTHO05D009149 2.3e-45 186.4 234 46.2
RcHm_v2.0_Chr3g0483391 Rosa chinensis HOM05D007260 ORTHO05D009149 3.0e-45 186.0 210 50.0
Eucgr.K02009 Eucalyptus grandis HOM05D007260 ORTHO05D009149 5.1e-45 185.3 202 48.0
Gohir.D03G072400 Gossypium hirsutum HOM05D007260 ORTHO05D009149 5.1e-45 185.3 206 49.0
Lsat_1_v5_gn_5_160501 Lactuca sativa HOM05D007260 ORTHO05D009149 5.1e-45 185.3 202 48.5
Duzib106G0310 Durio zibethinus HOM05D007260 ORTHO05D009149 1.5e-44 183.7 200 50.5
COL.COLO4_22299 Corchorus olitorius HOM05D007260 ORTHO05D009149 1.9e-44 183.3 209 49.8
FvH4_6g24410 Fragaria vesca HOM05D007260 ORTHO05D009149 1.9e-44 183.3 206 49.0
Sed0015422 Sechium edule HOM05D007260 ORTHO05D009149 3.3e-44 182.6 203 50.2
ECA248G0818 Erigeron canadensis HOM05D007260 ORTHO05D009149 2.8e-43 179.5 205 46.8
THA.LOC104802057 Tarenaya hassleriana HOM05D007260 ORTHO05D009149 4.7e-43 178.7 207 45.9
Prupe.7G054700 Prunus persica HOM05D007260 ORTHO05D009149 1.1e-42 177.6 210 49.0
Lj1g0013385 Lotus japonicus HOM05D007260 ORTHO05D009149 1.8e-42 176.8 203 46.8
CsaV3_6G012930 Cucumis sativus L. HOM05D007260 ORTHO05D009149 4.0e-42 175.6 210 45.7
ClCG04G003650 Citrullus lanatus HOM05D007260 ORTHO05D009149 5.2e-42 175.3 210 46.2
Nn2g15147 Nelumbo nucifera HOM05D007260 ORTHO05D009149 6.9e-42 174.9 202 46.5
CARHR136700 Cardamine hirsuta HOM05D007260 ORTHO05D009149 1.5e-41 173.7 205 45.4
Glyma.03G134300 Glycine max HOM05D007260 ORTHO05D009149 2.6e-41 172.9 195 48.7
Carub.0004s2386 Capsella rubella HOM05D007260 ORTHO05D009149 3.4e-41 172.6 206 47.6
Thhalv10017244m.g Eutrema salsugineum HOM05D007260 ORTHO05D009149 3.4e-41 172.6 205 47.8
Cc06_g17880 Coffea canephora HOM05D007260 ORTHO05D009149 4.4e-41 172.2 197 50.3
Atru.chr1.1150 Acer truncatum HOM05D007260 ORTHO05D009149 7.6e-41 171.4 203 47.8
FAN02G1162 Fragaria x ananassa HOM05D007260 ORTHO05D009149 2.9e-40 169.5 206 46.1
arahy.Tifrunner.gnm1.ann1.QMP5TS Arachis hypogaea HOM05D007260 ORTHO05D009149 3.8e-40 169.1 203 47.8
Ca_08430_v3 Cicer arietinum L. HOM05D007260 ORTHO05D009149 4.9e-40 168.7 196 44.9
Lalb_Chr01g0017381 Lupinus albus HOM05D007260 ORTHO05D009149 6.4e-40 168.3 203 44.8
arahy.Tifrunner.gnm1.ann1.HX298U Arachis hypogaea HOM05D007260 ORTHO05D009149 1.1e-39 167.5 203 47.8
EL10Ac3g07131 Beta vulgaris HOM05D007260 ORTHO05D009149 1.1e-39 167.5 206 43.2
Glyma.19G136500 Glycine max HOM05D007260 ORTHO05D009149 1.1e-39 167.5 196 48.5
Aa31LG1G23620 Aethionema arabicum HOM05D007260 ORTHO05D009149 1.9e-39 166.8 200 47.0
DCAR_020507 Daucus carota HOM05D007260 ORTHO05D009149 1.9e-39 166.8 172 49.4
Psat3g074400 Pisum sativum HOM05D007260 ORTHO05D009149 1.9e-39 166.8 203 45.8
VMungo1309G2091 Vigna mungo HOM05D007260 ORTHO05D009149 5.4e-39 165.2 195 47.7
Medtr7g091050 Medicago truncatula HOM05D007260 ORTHO05D009149 7.1e-39 164.9 203 43.3
Actinidia39206 Actinidia chinensis HOM05D007260 ORTHO05D009149 9.3e-39 164.5 146 56.8
Phvul.008G158118 Phaseolus vulgaris HOM05D007260 ORTHO05D009149 1.2e-38 164.1 195 46.7
Sp4g23850 Schrenkiella parvula HOM05D007260 ORTHO05D009149 1.2e-38 164.1 205 44.4
AUR62026087 Chenopodium quinoa HOM05D007260 ORTHO05D009149 2.7e-38 162.9 206 41.7
TPR.G18237 Trifolium pratense HOM05D007260 ORTHO05D009149 3.5e-38 162.5 210 43.8
Ah.13g076600 Amaranthus hybridus HOM05D007260 ORTHO05D009149 4.6e-38 162.2 197 44.7
AT2G41600 Arabidopsis thaliana HOM05D007260 ORTHO05D009149 4.6e-38 162.2 215 42.3
AUR62024501 Chenopodium quinoa HOM05D007260 ORTHO05D009149 1.0e-37 161.0 206 41.7
Sc25g0005370 Simmondsia chinensis HOM05D007260 ORTHO05D009149 1.3e-37 160.6 214 41.6
AL4G39670 Arabidopsis lyrata HOM05D007260 ORTHO05D009149 5.1e-37 158.7 206 41.7
BcaB06g29191 Brassica carinata HOM05D007260 ORTHO05D009149 5.1e-37 158.7 205 41.5
BraA04t18628Z Brassica rapa HOM05D007260 ORTHO05D009149 4.3e-36 155.6 204 43.6
A04p31710 Brassica napus HOM05D007260 ORTHO05D009149 5.6e-36 155.2 204 43.1
Manes.09G018400 Manihot esculenta HOM05D007260 ORTHO05D009149 7.3e-36 154.8 206 43.7
C04p69130 Brassica napus HOM05D007260 ORTHO05D009149 9.6e-36 154.5 205 43.4
HanXRQChr13g0396001 Helianthus annuus HOM05D007260 ORTHO05D009149 2.8e-35 152.9 165 50.9
BcaC02g07303 Brassica carinata HOM05D007260 ORTHO05D009149 4.8e-35 152.1 205 42.9
BolC4t28410H Brassica oleracea HOM05D007260 ORTHO05D009149 4.8e-35 152.1 205 42.9
MBI13_g10219_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 1.1e-34 151.0 159 51.6
PSO782G2785 Papaver somniferum HOM05D007260 ORTHO05D009149 1.1e-34 151.0 190 44.7
Haze_19813 Corylus avellana HOM05D007260 ORTHO05D009149 5.3e-34 148.7 147 53.1
Aqoxy1G00296 Aquilegia oxysepala HOM05D007260 ORTHO05D009149 1.5e-33 147.1 211 38.4
MBI13_g36811_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 5.8e-33 145.2 192 42.7
Haze_19810 Corylus avellana HOM05D007260 ORTHO05D009149 6.4e-32 141.7 136 54.4
Hund19138 Selenicereus undatus HOM05D007260 ORTHO05D009149 1.9e-31 140.2 209 39.2
unitig_8.g3500 Utricularia gibba HOM05D000800 ORTHO05D000658 8.7e-29 131.3 202 39.6
Dinv02794 Davidia involucrata HOM05D007260 ORTHO05D009149 1.3e-27 127.5 100 63.0
PSO063G4612 Papaver somniferum HOM05D007260 ORTHO05D009149 1.8e-26 123.6 255 32.9
MBI13_g37004_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 3.1e-26 122.9 181 39.2
Hma1.2p1_0110F.1_g052790 Hydrangea macrophylla HOM05D007260 ORTHO05D009149 4.0e-26 122.5 112 54.5
Lj1P1128T41 Lonicera japonica HOM05D007260 ORTHO05D009149 9.9e-25 117.9 110 52.7
MELO3C013619.2 Cucumis melo HOM05D007260 ORTHO05D009149 5.5e-23 112.1 142 41.5
CSS0011677 Camellia sinensis var. sinensis HOM05D007260 ORTHO05D009149 4.6e-22 109.0 114 55.3
Os11g0140100 Oryza sativa ssp. japonica HOM05D007260 ORTHO05D009149 1.3e-21 107.5 191 36.6
Zm00001eb405200 Zea mays HOM05D007260 ORTHO05D009149 5.6e-20 102.1 188 37.8
ATR0188G026 Amborella trichopoda HOM05D007260 ORTHO05D009149 6.2e-19 98.6 148 41.2
CDE04G0457 Ceratophyllum demersum HOM05D007260 ORTHO05D009149 4.0e-18 95.9 203 33.0
SEGI_00639 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 1.8e-10 70.5 131 38.2
SEGI_24189 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 1.8e-10 70.5 131 38.2
SEGI_29096 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 1.8e-10 70.5 131 38.2
Os12g0136600 Oryza sativa ssp. japonica HOM05D007260 ORTHO05D009149 4.1e-10 69.3 107 37.4
Carub.0002s2683 Capsella rubella HOM05D001009 ORTHO05D000829 1.2e-09 67.8 201 27.4
Manes.11G064600 Manihot esculenta HOM05D001009 ORTHO05D000829 4.5e-09 65.9 205 26.3
arahy.Tifrunner.gnm1.ann1.FFR9P9 Arachis hypogaea HOM05D001009 ORTHO05D000829 7.6e-09 65.1 204 30.4
Carub.0001s1567 Capsella rubella HOM05D001009 ORTHO05D000829 7.6e-09 65.1 201 27.9
arahy.Tifrunner.gnm1.ann1.U1AIJ2 Arachis hypogaea HOM05D001009 ORTHO05D000829 1.0e-08 64.7 202 29.7
Thhalv10008623m.g Eutrema salsugineum HOM05D001009 ORTHO05D000829 1.3e-08 64.3 201 26.9
SMO197G0050 Selaginella moellendorffii HOM05D001009 ORTHO05D000829 1.3e-08 64.3 159 32.1
SGA_v2.0_scaffold5G02758 Striga asiatica HOM05D001009 ORTHO05D000829 1.7e-08 63.9 189 27.5
AL1G28030 Arabidopsis lyrata HOM05D001009 ORTHO05D000829 2.2e-08 63.5 197 27.4
arahy.Tifrunner.gnm1.ann1.B3W4AW Arachis hypogaea HOM05D001009 ORTHO05D000829 2.2e-08 63.5 202 29.7
AT1G15870 Arabidopsis thaliana HOM05D001009 ORTHO05D000829 2.9e-08 63.2 201 26.9
PGR031G1509 Punica granatum HOM05D001009 ORTHO05D000829 2.9e-08 63.2 204 26.0
AT1G80720 Arabidopsis thaliana HOM05D001009 ORTHO05D000829 3.8e-08 62.8 203 27.1
arahy.Tifrunner.gnm1.ann1.4F3MJE Arachis hypogaea HOM05D001009 ORTHO05D000829 3.8e-08 62.8 202 30.2
Sp1g14170 Schrenkiella parvula HOM05D001009 ORTHO05D000829 3.8e-08 62.8 201 25.9
C05p14100 Brassica napus HOM05D001009 ORTHO05D000829 5.0e-08 62.4 202 28.2
CARHR016390 Cardamine hirsuta HOM05D001009 ORTHO05D000829 5.0e-08 62.4 208 25.5
SalBow6G5081 Salvia bowleyana HOM05D001009 ORTHO05D000829 5.0e-08 62.4 210 28.1
BolC5t30141H Brassica oleracea HOM05D001009 ORTHO05D000829 6.5e-08 62.0 202 28.7
PSO513G0054 Papaver somniferum HOM05D001009 ORTHO05D000829 6.5e-08 62.0 204 27.5
Pp3c12_23320 Physcomitrium patens HOM05D001009 ORTHO05D000829 8.5e-08 61.6 201 26.4
SalBow6G2327 Salvia bowleyana HOM05D001009 ORTHO05D000829 8.5e-08 61.6 210 28.1
MSTRG.11173 Avicennia marina HOM05D001009 ORTHO05D000829 2.5e-07 60.1 199 25.1
unitig_0.g1108 Utricularia gibba HOM05D001009 ORTHO05D000829 2.5e-07 60.1 199 23.6
Ciclev10026378m.g Citrus clementina HOM05D001009 ORTHO05D000829 3.2e-07 59.7 201 24.4
Migut.I00712 Erythranthe guttata HOM05D001009 ORTHO05D000829 4.2e-07 59.3 202 25.7
Gohir.A05G347400 Gossypium hirsutum HOM05D001009 ORTHO05D000829 4.2e-07 59.3 203 30.5
Oeu010366.1 Olea europaea HOM05D001009 ORTHO05D000829 4.2e-07 59.3 200 26.0
Prupe.2G240700 Prunus persica HOM05D001009 ORTHO05D000829 4.2e-07 59.3 195 26.7
Sp5g35030 Schrenkiella parvula HOM05D001009 ORTHO05D000829 7.2e-07 58.5 196 26.5
CsaV3_7G031950 Cucumis sativus L. HOM05D001009 ORTHO05D000829 9.3e-07 58.2 199 24.6
Glyma.14G065700 Glycine max HOM05D001009 ORTHO05D000829 9.3e-07 58.2 201 27.9
MCO05G729 Micromonas commoda HOM05D001009 ORTHO05D000829 9.3e-07 58.2 112 32.1
Phvul.008G230400 Phaseolus vulgaris HOM05D001009 ORTHO05D000829 9.3e-07 58.2 201 28.4
Phvul.010G159900 Phaseolus vulgaris HOM05D001009 ORTHO05D000829 9.3e-07 58.2 206 23.3
CANSAT56G0269 Cannabis sativa HOM05D001009 ORTHO05D000829 1.6e-06 57.4 203 24.6
LjContig00141g0011947 Lotus japonicus HOM05D001009 ORTHO05D000829 1.6e-06 57.4 203 27.6
Lalb_Chr17g0346401 Lupinus albus HOM05D001009 ORTHO05D000829 1.6e-06 57.4 201 27.4
Os06g0326500 Oryza sativa ssp. japonica HOM05D001009 ORTHO05D000829 1.6e-06 57.4 205 25.9
Gohir.D04G064900 Gossypium hirsutum HOM05D001009 ORTHO05D000829 2.1e-06 57.0 204 30.4
Gorai.012G073000 Gossypium raimondii HOM05D001009 ORTHO05D000829 2.1e-06 57.0 204 30.4
Nitab4.5_0001454g0100 Nicotiana tabacum HOM05D001009 ORTHO05D000829 2.1e-06 57.0 202 25.2
Psat2g038720 Pisum sativum HOM05D001009 ORTHO05D000829 2.1e-06 57.0 202 27.7
THA.LOC104812438 Tarenaya hassleriana HOM05D001009 ORTHO05D000829 2.1e-06 57.0 197 24.9
VMungo0331G0712 Vigna mungo HOM05D001009 ORTHO05D000829 2.1e-06 57.0 207 23.2
arahy.Tifrunner.gnm1.ann1.2WFT1V Arachis hypogaea HOM05D001009 ORTHO05D000829 2.7e-06 56.6 206 24.8
arahy.Tifrunner.gnm1.ann1.Y2MR3P Arachis hypogaea HOM05D001009 ORTHO05D000829 2.7e-06 56.6 206 24.8
C06p53750 Brassica napus HOM05D001009 ORTHO05D000829 2.7e-06 56.6 200 25.0
Thhalv10019068m.g Eutrema salsugineum HOM05D001009 ORTHO05D000829 2.7e-06 56.6 200 25.0
TPR.G25850 Trifolium pratense HOM05D001009 ORTHO05D000829 2.7e-06 56.6 211 27.5
VMungo0647G0043 Vigna mungo HOM05D001009 ORTHO05D000829 2.7e-06 56.6 202 27.2
A07p44970 Brassica napus HOM05D001009 ORTHO05D000829 3.6e-06 56.2 201 26.4
Cpa.g.sc33.170 Carica papaya HOM05D001009 ORTHO05D000829 3.6e-06 56.2 205 25.4
Glyma.02G251000 Glycine max HOM05D001009 ORTHO05D000829 3.6e-06 56.2 200 27.5
MD00G1141400 Malus domestica HOM05D001009 ORTHO05D000829 3.6e-06 56.2 194 27.8
Nn8g39766 Nelumbo nucifera HOM05D001009 ORTHO05D000829 3.6e-06 56.2 207 24.6
Eucgr.E02483 Eucalyptus grandis HOM05D001009 ORTHO05D000829 4.6e-06 55.8 198 25.8
MD12G1094400 Malus domestica HOM05D001009 ORTHO05D000829 4.6e-06 55.8 195 27.2
SGA_v2.0_scaffold2G00985 Striga asiatica HOM05D001009 ORTHO05D000829 4.6e-06 55.8 196 27.6
BcaC08g47550 Brassica carinata HOM05D001009 ORTHO05D000829 6.1e-06 55.5 200 25.0
BolC6t40393H Brassica oleracea HOM05D001009 ORTHO05D000829 6.1e-06 55.5 200 25.0
MD07G1204400 Malus domestica HOM05D001009 ORTHO05D000829 6.1e-06 55.5 195 26.7
Nitab4.5_0009423g0010 Nicotiana tabacum HOM05D001009 ORTHO05D000829 6.1e-06 55.5 204 24.5
CANSAT56G1474 Cannabis sativa HOM05D001009 ORTHO05D000829 7.9e-06 55.1 205 27.3
TWI34G0265 Tripterygium wilfordii HOM05D001009 ORTHO05D000829 7.9e-06 55.1 202 25.2


User provided reference genes

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