Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 1.3e-71 273.5 200 100.0
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 1.7e-55 219.9 201 86.6
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 6.5e-55 218.0 206 86.9
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 1.9e-46 189.9 201 82.1
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 5.6e-38 161.8 201 54.2
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 5.6e-38 161.8 201 66.7
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 5.6e-38 161.8 202 66.8
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 4.7e-37 158.7 202 64.9
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 4.7e-37 158.7 201 65.7
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 6.1e-37 158.3 201 62.2
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 1.0e-36 157.5 99 82.8
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 1.4e-36 157.1 89 91.0
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 2.3e-36 156.4 207 62.3
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.2e-35 154.1 199 62.3
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.6e-35 152.9 199 61.8
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 4.4e-35 152.1 199 61.8
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 4.4e-35 152.1 199 62.8
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 5.8e-35 151.8 201 62.2
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 7.5e-35 151.4 200 60.5
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 1.7e-34 150.2 195 59.5
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 1.1e-33 147.5 193 59.6
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 1.1e-33 147.5 204 62.3
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 1.8e-33 146.7 195 61.5
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 2.4e-33 146.4 198 50.0
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 3.2e-33 146.0 96 77.1
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 3.2e-33 146.0 205 54.6
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 3.2e-33 146.0 194 58.8
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 7.0e-33 144.8 201 57.2
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 7.0e-33 144.8 95 77.9
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.2e-32 144.1 194 56.7
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 1.2e-32 144.1 204 62.3
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 1.2e-32 144.1 96 75.0
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 1.6e-32 143.7 202 56.4
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 3.5e-32 142.5 96 74.0
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 3.5e-32 142.5 202 56.9
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 4.6e-32 142.1 197 60.9
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 6.0e-32 141.7 195 50.3
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 1.3e-31 140.6 97 72.2
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 1.7e-31 140.2 229 50.2
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 3.9e-31 139.0 97 72.2
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 5.0e-31 138.7 97 71.1
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 5.0e-31 138.7 99 70.7
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 6.6e-31 138.3 200 56.5
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 6.6e-31 138.3 97 71.1
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 1.1e-30 137.5 95 72.6
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 2.5e-30 136.3 238 55.0
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 3.3e-30 136.0 97 70.1
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 3.3e-30 136.0 97 70.1
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 3.3e-30 136.0 97 69.1
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 5.6e-30 135.2 97 69.1
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 7.3e-30 134.8 191 56.5
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 7.3e-30 134.8 191 56.5
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 7.3e-30 134.8 219 63.0
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 2.1e-29 133.3 234 56.4
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 2.8e-29 132.9 97 68.0
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 2.8e-29 132.9 93 72.0
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 1.1e-28 131.0 93 71.0
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 1.8e-28 130.2 97 66.0
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 2.3e-28 129.8 97 67.0
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.2e-27 127.5 95 68.4
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 2.6e-27 126.3 206 53.9
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 2.6e-27 126.3 95 68.4
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 5.8e-27 125.2 95 67.4
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 7.5e-27 124.8 237 60.3
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 1.3e-26 124.0 96 59.4
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 2.2e-26 123.2 95 65.3
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 2.2e-26 123.2 85 71.8
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 3.7e-26 122.5 88 67.0
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 6.4e-26 121.7 239 57.7
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 1.9e-25 120.2 96 64.6
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 1.9e-25 120.2 97 60.8
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 2.4e-25 119.8 86 70.9
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 3.2e-25 119.4 95 62.1
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 4.1e-25 119.0 96 63.5
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 4.1e-25 119.0 188 55.9
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 5.4e-25 118.6 180 48.3
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 7.0e-25 118.2 246 49.6
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.6e-24 117.1 180 55.0
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 1.6e-24 117.1 84 67.9
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 2.0e-24 116.7 85 72.9
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 1.0e-23 114.4 85 69.4
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 2.3e-23 113.2 215 58.1
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 3.0e-23 112.8 91 56.0
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 3.9e-23 112.5 85 67.1
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 8.1e-21 104.8 94 59.6
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 1.1e-20 104.4 220 60.9
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 3.1e-20 102.8 94 55.3
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 3.1e-20 102.8 94 55.3
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 3.1e-20 102.8 97 60.8
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 3.1e-20 102.8 94 55.3
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 3.1e-20 102.8 170 53.5
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 4.0e-20 102.4 77 66.2
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 5.2e-20 102.1 97 57.7
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 6.8e-20 101.7 86 59.3
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 1.5e-19 100.5 97 59.8
Nitab4.5_0001219g0120 Nicotiana tabacum HOM05D006504 ORTHO05D007867 1.5e-19 100.5 89 64.0
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 1.5e-19 100.5 200 49.0
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 2.6e-19 99.8 92 54.3
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 2.6e-19 99.8 79 67.1
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 2.6e-19 99.8 92 54.3
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 2.2e-18 96.7 95 55.8
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 2.4e-17 93.2 96 51.0
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 6.0e-16 88.6 97 50.5
Nitab4.5_0002964g0020 Nicotiana tabacum HOM05D006504 ORTHO05D007867 1.0e-15 87.8 135 74.8
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 1.3e-15 87.4 81 63.0
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 3.0e-15 86.3 85 57.6
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 3.0e-15 86.3 85 57.6
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 3.9e-15 85.9 80 65.0
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 5.1e-15 85.5 163 42.9
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 1.1e-14 84.3 79 62.0
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 2.1e-13 80.1 80 62.5
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 1.1e-12 77.8 89 49.4
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 1.4e-12 77.4 51 72.5
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 1.2e-11 74.3 80 50.0
DCAR_007625 Daucus carota HOM05D006504 ORTHO05D007867 3.4e-11 72.8 88 47.7
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 1.7e-10 70.5 75 52.0
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 2.4e-09 66.6 73 52.1
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 3.2e-09 66.2 48 66.7
Pp3c21_4920 Physcomitrium patens HOM05D006504 ORTHO05D007867 2.3e-07 60.1 97 37.1
AT1G29580 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 6.6e-07 58.5 97 42.3
SGA_v2.0_scaffold464G52010 Striga asiatica HOM05D006504 ORTHO05D007867 1.5e-06 57.4 34 79.4
AagrBONN_evm.TU.Sc2ySwM_344.1668 Anthoceros agrestis HOM05D006504 ORTHO05D007867 4.3e-06 55.8 60 45.0
SalBow6G4228 Salvia bowleyana HOM05D006504 ORTHO05D007867 5.6e-06 55.5 35 77.1
SalBow6G4685 Salvia bowleyana HOM05D006504 ORTHO05D007867 5.6e-06 55.5 35 77.1
Aa31LG8G1010 Aethionema arabicum HOM05D006504 ORTHO05D007867 7.3e-06 55.1 59 47.5
Phvul.010G138400 Phaseolus vulgaris HOM05D006504 ORTHO05D007867 7.3e-06 55.1 204 39.2


User provided reference genes

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