Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 0.0e+00 1146.3 572 100.0
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 0.0e+00 1075.5 569 92.8
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 2.7e-311 1071.2 553 92.9
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.0e-310 1069.3 569 92.1
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.3e-310 1068.9 567 91.2
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 8.1e-308 1059.7 567 91.2
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 9.2e-304 1046.2 570 89.1
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 2.9e-289 998.0 570 83.5
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 6.0e-279 963.8 570 81.1
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 1.5e-277 959.1 570 80.9
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 5.8e-274 947.2 570 79.5
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 8.4e-273 943.3 553 80.7
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.1e-272 943.0 570 79.1
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 1.4e-272 942.6 553 79.7
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 1.9e-272 942.2 570 79.6
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.9e-272 942.2 545 81.1
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 6.0e-271 937.2 553 80.3
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 7.9e-271 936.8 553 80.3
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.3e-270 936.0 553 80.1
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 3.9e-270 934.5 570 78.2
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 3.9e-270 934.5 534 82.2
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 5.1e-270 934.1 570 77.5
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 6.7e-270 933.7 570 77.9
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 6.7e-270 933.7 570 77.9
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 8.7e-270 933.3 563 78.5
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 1.1e-269 932.9 544 81.2
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 1.1e-269 932.9 553 80.3
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 1.5e-269 932.6 570 77.7
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 1.9e-269 932.2 553 80.5
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 1.9e-269 932.2 570 78.4
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 2.5e-269 931.8 570 77.9
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 2.5e-269 931.8 561 78.6
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 3.3e-269 931.4 569 79.6
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 5.6e-269 930.6 544 80.9
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 5.6e-269 930.6 561 78.3
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 5.6e-269 930.6 553 79.7
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 5.6e-269 930.6 544 80.0
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 7.4e-269 930.2 561 78.8
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 9.6e-269 929.9 571 80.2
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 9.6e-269 929.9 563 78.3
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 2.1e-268 928.7 562 78.3
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 8.2e-268 926.8 553 79.9
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 1.8e-267 925.6 570 77.2
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.8e-267 925.6 570 77.7
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 3.1e-267 924.9 553 79.4
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 3.1e-267 924.9 570 77.2
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.2e-266 922.9 553 79.9
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 3.4e-266 921.4 543 79.6
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 4.5e-266 921.0 544 79.4
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 1.3e-265 919.5 570 77.0
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.2e-265 918.7 543 79.4
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 3.8e-265 917.9 570 77.2
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 3.8e-265 917.9 545 79.4
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 3.8e-265 917.9 553 78.8
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 3.8e-265 917.9 570 76.8
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 4.9e-265 917.5 561 77.2
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 4.9e-265 917.5 553 78.7
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 1.1e-264 916.4 553 78.3
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 1.1e-264 916.4 570 76.5
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 1.1e-264 916.4 553 78.3
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 1.1e-264 916.4 553 78.3
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 2.5e-264 915.2 570 76.8
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 3.2e-264 914.8 570 76.3
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 4.2e-264 914.4 568 76.6
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 7.1e-264 913.7 553 78.7
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 9.3e-264 913.3 553 79.0
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 1.2e-263 912.9 545 79.4
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 6.0e-263 910.6 545 78.7
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 1.0e-262 909.8 570 76.3
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 1.5e-261 906.0 570 75.6
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 3.3e-261 904.8 570 76.3
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 4.3e-261 904.4 570 75.4
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 7.4e-261 903.7 570 76.1
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 9.7e-261 903.3 553 77.4
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 9.7e-261 903.3 570 75.4
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 1.3e-260 902.9 543 79.2
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 1.6e-260 902.5 570 74.9
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 6.3e-260 900.6 570 76.0
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 8.2e-260 900.2 570 75.8
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 6.9e-259 897.1 561 75.2
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 6.9e-259 897.1 543 78.3
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 9.0e-259 896.7 557 75.2
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.2e-258 896.3 553 77.4
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.5e-258 896.0 564 76.1
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 2.6e-258 895.2 570 74.9
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 1.0e-257 893.3 570 75.1
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 2.9e-257 891.7 566 75.4
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 2.9e-257 891.7 574 75.1
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 3.8e-257 891.3 558 76.3
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 5.0e-257 891.0 564 75.7
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 1.4e-256 889.4 559 74.2
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 1.9e-256 889.0 570 74.6
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 5.5e-256 887.5 553 76.3
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 7.2e-256 887.1 553 76.3
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 9.4e-256 886.7 553 76.1
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 9.4e-256 886.7 553 76.1
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 1.6e-255 885.9 553 75.8
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 1.6e-255 885.9 543 76.8
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 1.6e-255 885.9 553 76.1
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 1.6e-255 885.9 553 76.1
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 1.6e-255 885.9 553 76.1
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 2.7e-255 885.2 553 76.1
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 3.6e-255 884.8 553 75.9
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 3.6e-255 884.8 543 77.2
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 4.6e-255 884.4 553 75.9
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 4.6e-255 884.4 543 76.1
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 6.1e-255 884.0 543 76.4
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.8e-254 882.5 553 75.4
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 2.3e-254 882.1 553 75.4
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 3.0e-254 881.7 553 74.9
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 5.1e-254 880.9 544 75.7
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 5.1e-254 880.9 559 73.7
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 6.7e-254 880.6 557 75.6
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.1e-253 879.8 553 76.1
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 9.7e-253 876.7 544 75.7
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.7e-252 875.9 553 75.2
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 2.2e-252 875.5 570 73.0
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 6.3e-252 874.0 570 73.2
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 1.1e-251 873.2 543 76.4
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 1.1e-251 873.2 570 74.4
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 3.1e-251 871.7 553 74.5
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 4.1e-251 871.3 570 72.3
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 9.1e-251 870.2 543 76.1
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 7.7e-250 867.1 553 74.7
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 1.7e-249 865.9 553 74.5
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 2.2e-249 865.5 553 74.5
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 2.2e-249 865.5 562 73.7
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 9.7e-245 850.1 549 75.6
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 2.8e-236 822.0 526 74.3
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 3.1e-235 818.5 573 68.8
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 4.1e-235 818.1 552 69.0
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 4.1e-235 818.1 563 68.9
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 7.0e-235 817.4 543 70.7
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 1.2e-234 816.6 543 71.5
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 2.3e-230 802.4 559 68.9
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 5.2e-230 801.2 553 70.2
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.8e-222 776.2 552 67.8
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 4.1e-219 765.0 553 68.9
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 6.6e-217 757.7 455 76.9
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.0e-201 707.2 425 77.9
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 2.9e-196 689.1 421 78.4
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.2e-180 636.3 373 78.3
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 2.8e-175 619.4 553 57.7
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 4.9e-172 608.6 540 54.1
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 1.1e-171 607.4 570 54.9
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 3.0e-161 572.8 488 53.3
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 7.1e-155 551.6 316 78.8
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.6e-154 550.4 521 49.5
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.0e-153 547.7 412 67.2
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 3.0e-145 519.6 418 56.7
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 6.3e-135 485.3 279 77.4
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 3.8e-132 476.1 304 75.3
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.7e-127 459.5 570 47.4
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.2e-124 450.3 570 45.8
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.0e-113 414.8 455 51.0
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 8.6e-84 315.5 491 36.7
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 4.0e-73 280.0 200 67.0
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 1.9e-67 261.2 551 33.8
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 4.0e-57 226.9 166 63.9
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 1.3e-55 221.9 134 73.1
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 8.4e-55 219.2 134 73.1
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 6.7e-44 183.0 106 79.2
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 2.8e-42 177.6 133 66.9
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 3.1e-41 174.1 116 65.5
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 6.9e-41 172.9 166 57.2
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 2.0e-40 171.4 166 56.6
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 2.0e-40 171.4 128 67.2
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 1.3e-39 168.7 166 56.6
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 1.3e-39 168.7 166 56.6
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.7e-39 168.3 319 32.9
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 5.8e-32 143.3 497 27.2
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.9e-27 128.3 97 59.8
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 4.3e-27 127.1 92 64.1
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 4.1e-25 120.6 75 69.3
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 5.3e-25 120.2 213 37.6
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 2.2e-23 114.8 67 74.6
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 1.3e-18 99.0 185 36.2
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 2.2e-18 98.2 166 39.8
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 5.9e-16 90.1 53 71.7
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 4.8e-10 70.5 46 63.0
Cc08_g01180 Coffea canephora HOM05D000597 ORTHO05D006307 5.5e-06 57.0 176 26.7


User provided reference genes

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