Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G668.10 Capsicum annuum HOM05D011052 ORTHO05D004636 1.9e-234 815.5 406 100.0
QL04p025475 Quercus lobata HOM05D000003 ORTHO05D000004 2.4e-16 90.9 165 33.9
QL08p061842 Quercus lobata HOM05D000003 ORTHO05D000004 1.8e-14 84.7 158 31.6
QL01p022100 Quercus lobata HOM05D000003 ORTHO05D000004 6.7e-14 82.8 166 31.9
Atru.chr13.2390 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-13 81.3 147 32.7
QL05p015875 Quercus lobata HOM05D000003 ORTHO05D000004 5.6e-13 79.7 166 31.9
COL.COLO4_36959 Corchorus olitorius HOM05D000003 ORTHO05D000004 7.4e-13 79.3 163 31.9
Atru.chr1.2428 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-12 77.4 164 27.4
Atru.chr6.1028 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-12 77.4 171 29.8
Atru.chr11.757 Acer truncatum HOM05D000003 ORTHO05D000004 2.4e-11 74.3 171 27.5
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 4.0e-11 73.6 146 28.1
Atru.chr7.171 Acer truncatum HOM05D000003 ORTHO05D000004 4.0e-11 73.6 160 29.4
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 4.0e-11 73.6 164 31.1
PSO675G7220 Papaver somniferum HOM05D000003 ORTHO05D000651 5.3e-11 73.2 147 27.2
RcHm_v2.0_Chr6g0291741 Rosa chinensis HOM05D000003 ORTHO05D000004 5.3e-11 73.2 162 27.2
Atru.chr4.911 Acer truncatum HOM05D000003 ORTHO05D000004 6.9e-11 72.8 140 30.7
Atru.chr13.1154 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-10 72.0 165 26.7
PSO675G5132 Papaver somniferum HOM05D000003 ORTHO05D000004 2.0e-10 71.2 104 34.6
Aqoxy3G01360 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.6e-10 70.9 166 33.1
Atru.chr11.1055 Acer truncatum HOM05D000003 ORTHO05D000004 4.5e-10 70.1 110 33.6
PSO170G1725 Papaver somniferum HOM05D000003 ORTHO05D000004 4.5e-10 70.1 104 34.6
PSO675G7763 Papaver somniferum HOM05D000003 ORTHO05D000004 5.8e-10 69.7 104 34.6
Atru.chr2.1278 Acer truncatum HOM05D000003 ORTHO05D000004 7.6e-10 69.3 104 37.5
Aqoxy3G00664 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 7.6e-10 69.3 170 31.8
PSO170G3369 Papaver somniferum HOM05D000003 ORTHO05D000004 7.6e-10 69.3 136 25.0
Atru.chr1.2568 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-09 68.9 124 35.5
Atru.chr4.1863 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-09 68.6 154 27.9
Atru.chr5.2472 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-09 68.2 112 35.7
Aqoxy6G01480 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.7e-09 68.2 113 34.5
FvH4_5g27994 Fragaria vesca HOM05D000003 ORTHO05D000004 1.7e-09 68.2 109 35.8
RcHm_v2.0_Chr6g0278601 Rosa chinensis HOM05D000003 ORTHO05D000004 1.7e-09 68.2 161 26.1
AUR62033970 Chenopodium quinoa HOM05D000003 ORTHO05D000004 2.2e-09 67.8 159 28.9
Atru.chr11.920 Acer truncatum HOM05D000003 ORTHO05D000004 2.9e-09 67.4 108 35.2
Atru.chr13.1500 Acer truncatum HOM05D000003 ORTHO05D000004 3.8e-09 67.0 112 34.8
Atru.chr3.1567 Acer truncatum HOM05D000003 ORTHO05D000004 3.8e-09 67.0 108 33.3
Atru.chr3.1587 Acer truncatum HOM05D000003 ORTHO05D000004 3.8e-09 67.0 108 33.3
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 3.8e-09 67.0 109 29.4
Atru.chr10.418 Acer truncatum HOM05D000003 ORTHO05D000004 6.5e-09 66.2 121 30.6
Atru.chr1.2485 Acer truncatum HOM05D000003 ORTHO05D000004 8.4e-09 65.9 108 33.3
COL.COLO4_25560 Corchorus olitorius HOM05D000003 ORTHO05D022427 8.4e-09 65.9 149 28.9
Atru.chr4.50 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-08 65.5 94 37.2
Atru.chr9.1526 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-08 65.5 153 28.8
PSO754G0062 Papaver somniferum HOM05D000003 ORTHO05D008897 1.4e-08 65.1 167 31.1
Atru.chr7.591 Acer truncatum HOM05D000003 ORTHO05D000004 2.5e-08 64.3 109 31.2
Aqoxy7G02241 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.5e-08 64.3 134 32.8
PSO017G6570 Papaver somniferum HOM05D000003 ORTHO05D000651 2.5e-08 64.3 113 33.6
Atru.chr6.1036 Acer truncatum HOM05D000003 ORTHO05D000004 3.2e-08 63.9 169 25.4
Atru.chr8.1026 Acer truncatum HOM05D000003 ORTHO05D000004 3.2e-08 63.9 94 33.0
Atru.chr9.657 Acer truncatum HOM05D000003 ORTHO05D000004 3.2e-08 63.9 129 31.0
Aqoxy4G01668 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.2e-08 63.9 116 29.3
Aqoxy7G01885 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.2e-08 63.9 93 33.3
Nitab4.5_0004065g0010 Nicotiana tabacum HOM05D011052 ORTHO05D004636 3.2e-08 63.9 84 32.1
PSO017G4097 Papaver somniferum HOM05D000003 ORTHO05D000004 3.2e-08 63.9 117 31.6
Atru.chr11.663 Acer truncatum HOM05D000003 ORTHO05D000004 4.2e-08 63.5 108 33.3
Atru.chr5.1622 Acer truncatum HOM05D000003 ORTHO05D000004 4.2e-08 63.5 108 34.3
TWI38G0333 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.2e-08 63.5 108 32.4
Atru.chr13.1818 Acer truncatum HOM05D000003 ORTHO05D000004 5.5e-08 63.2 133 30.8
PSO173G0168 Papaver somniferum HOM05D000003 ORTHO05D000004 5.5e-08 63.2 106 33.0
PSO675G9208 Papaver somniferum HOM05D000003 ORTHO05D000004 5.5e-08 63.2 106 26.4
PSO339G4202 Papaver somniferum HOM05D000003 ORTHO05D006738 7.1e-08 62.8 97 37.1
PSO782G2807 Papaver somniferum HOM05D000003 ORTHO05D000004 7.1e-08 62.8 153 29.4
Atru.chr1.2596 Acer truncatum HOM05D000003 ORTHO05D000004 9.3e-08 62.4 108 32.4
Atru.chr7.663 Acer truncatum HOM05D000003 ORTHO05D000004 9.3e-08 62.4 108 32.4
Aqoxy3G02379 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 9.3e-08 62.4 170 23.5
MELO3C022264.2 Cucumis melo HOM05D000003 ORTHO05D000004 1.2e-07 62.0 107 34.6
PSO063G2584 Papaver somniferum HOM05D000003 ORTHO05D000651 1.2e-07 62.0 142 23.9
PSO339G3340 Papaver somniferum HOM05D000003 ORTHO05D000004 1.2e-07 62.0 153 27.5
PSO675G0794 Papaver somniferum HOM05D000003 ORTHO05D000651 1.2e-07 62.0 104 29.8
Atru.chr10.527 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-07 61.6 108 29.6
PSO384G0279 Papaver somniferum HOM05D000003 ORTHO05D000651 1.6e-07 61.6 129 25.6
PSO675G5191 Papaver somniferum HOM05D000003 ORTHO05D000004 1.6e-07 61.6 105 29.5
Atru.chr11.973 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-07 61.2 108 30.6
Aa31LG9G1700 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.1e-07 61.2 114 33.3
PSO013G0297 Papaver somniferum HOM05D000003 ORTHO05D000004 2.1e-07 61.2 109 31.2
PSO063G6815 Papaver somniferum HOM05D000003 ORTHO05D000004 2.1e-07 61.2 104 30.8
PSO675G5313 Papaver somniferum HOM05D000003 ORTHO05D000004 2.1e-07 61.2 136 24.3
RcHm_v2.0_Chr2g0120031 Rosa chinensis HOM05D000003 ORTHO05D000004 2.1e-07 61.2 91 31.9
RcHm_v2.0_Chr3g0466111 Rosa chinensis HOM05D000003 ORTHO05D000004 2.1e-07 61.2 91 31.9
Aqoxy3G02146 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.7e-07 60.8 134 29.9
CAN.G1249.11 Capsicum annuum HOM05D001008 ORTHO05D006516 2.7e-07 60.8 60 51.7
PSO210G0543 Papaver somniferum HOM05D000003 ORTHO05D000651 2.7e-07 60.8 148 27.7
Atru.chr6.490 Acer truncatum HOM05D000003 ORTHO05D000004 3.5e-07 60.5 112 33.0
CSS0006955 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.5e-07 60.5 112 27.7
PSO133G0079 Papaver somniferum HOM05D000003 ORTHO05D000004 3.5e-07 60.5 98 33.7
PSO541G1306 Papaver somniferum HOM05D000003 ORTHO05D000004 4.6e-07 60.1 104 30.8
SEGI_03672 Sequoiadendron giganteum HOM05D000038 ORTHO05D000143 4.6e-07 60.1 136 26.5
Aqoxy4G01791 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 6.0e-07 59.7 132 28.8
PSO017G0836 Papaver somniferum HOM05D000003 ORTHO05D000004 6.0e-07 59.7 150 27.3
PSO210G0446 Papaver somniferum HOM05D000003 ORTHO05D000004 6.0e-07 59.7 99 33.3
RcHm_v2.0_Chr6g0249781 Rosa chinensis HOM05D000003 ORTHO05D000004 6.0e-07 59.7 148 26.4
SEGI_16345 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 6.0e-07 59.7 146 26.7
FvH4_3g24611 Fragaria vesca HOM05D000003 ORTHO05D000004 7.9e-07 59.3 150 28.7
PSO017G4884 Papaver somniferum HOM05D000003 ORTHO05D000004 7.9e-07 59.3 106 35.8
PSO017G5690 Papaver somniferum HOM05D000003 ORTHO05D000004 7.9e-07 59.3 106 35.8
PSO339G2129 Papaver somniferum HOM05D000003 ORTHO05D000004 7.9e-07 59.3 145 24.8
PSO339G4078 Papaver somniferum HOM05D000003 ORTHO05D000651 7.9e-07 59.3 104 31.7
Atru.chr9.519 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-06 58.9 103 31.1
CANSAT54G2428 Cannabis sativa HOM05D000003 ORTHO05D000004 1.0e-06 58.9 144 27.8
Manes.12G104550 Manihot esculenta HOM05D000003 ORTHO05D000004 1.0e-06 58.9 102 32.4
PSO063G7517 Papaver somniferum HOM05D000003 ORTHO05D000651 1.0e-06 58.9 149 27.5
PSO384G3154 Papaver somniferum HOM05D000003 ORTHO05D000004 1.0e-06 58.9 106 25.5
PSO675G0833 Papaver somniferum HOM05D000003 ORTHO05D000004 1.0e-06 58.9 148 20.9
PSO170G5907 Papaver somniferum HOM05D000003 ORTHO05D000004 1.3e-06 58.5 140 27.1
PSO339G2335 Papaver somniferum HOM05D000003 ORTHO05D000004 1.3e-06 58.5 147 23.1
PSO675G3682 Papaver somniferum HOM05D000003 ORTHO05D000004 1.3e-06 58.5 108 32.4
QL03p033496 Quercus lobata HOM05D000003 ORTHO05D000004 1.3e-06 58.5 126 27.8
QL05p086823 Quercus lobata HOM05D000003 ORTHO05D000004 1.3e-06 58.5 107 31.8
QL09p031928 Quercus lobata HOM05D000003 ORTHO05D000004 1.3e-06 58.5 111 27.0
Aqoxy1G03455 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.8e-06 58.2 108 29.6
CiPaw.14G089200 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.8e-06 58.2 128 28.1
FvH4_4g06793 Fragaria vesca HOM05D000003 ORTHO05D000004 1.8e-06 58.2 106 32.1
PSO170G2357 Papaver somniferum HOM05D000003 ORTHO05D000651 1.8e-06 58.2 180 23.9
PSO675G0611 Papaver somniferum HOM05D000003 ORTHO05D000651 1.8e-06 58.2 87 29.9
QL03p025076 Quercus lobata HOM05D000003 ORTHO05D000004 1.8e-06 58.2 111 27.9
TWI36G1756 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.8e-06 58.2 162 27.2
Atru.chr7.713 Acer truncatum HOM05D000003 ORTHO05D000004 2.3e-06 57.8 95 35.8
Aqoxy4G01811 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.3e-06 57.8 120 30.0
PSO210G2084 Papaver somniferum HOM05D000003 ORTHO05D000651 2.3e-06 57.8 156 26.3
PSO339G3967 Papaver somniferum HOM05D000003 ORTHO05D000651 2.3e-06 57.8 112 27.7
PSO761G0552 Papaver somniferum HOM05D000003 ORTHO05D000004 2.3e-06 57.8 104 26.9
Prupe.5G020600 Prunus persica HOM05D000003 ORTHO05D000004 2.3e-06 57.8 117 30.8
QL12p026404 Quercus lobata HOM05D000003 ORTHO05D000004 2.3e-06 57.8 107 31.8
Atru.chr8.899 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-06 57.4 148 29.7
Aqoxy4G01646 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.0e-06 57.4 118 29.7
CANSAT64G1529 Cannabis sativa HOM05D000003 ORTHO05D000004 3.0e-06 57.4 106 34.0
CANSAT80G2259 Cannabis sativa HOM05D000003 ORTHO05D000004 3.0e-06 57.4 163 28.8
FvH4_5g08844 Fragaria vesca HOM05D000003 ORTHO05D000004 3.0e-06 57.4 144 25.0
PSO063G3744 Papaver somniferum HOM05D000003 ORTHO05D000004 3.0e-06 57.4 163 30.7
PSO339G6112 Papaver somniferum HOM05D000003 ORTHO05D000004 3.0e-06 57.4 98 35.7
QL02p022361 Quercus lobata HOM05D000003 ORTHO05D000004 3.0e-06 57.4 130 25.4
SEGI_28579 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 3.0e-06 57.4 134 28.4
Atru.chr12.2026 Acer truncatum HOM05D000003 ORTHO05D000004 3.9e-06 57.0 111 30.6
Atru.chr12.2439 Acer truncatum HOM05D000003 ORTHO05D000004 3.9e-06 57.0 108 32.4
Aa31LG11G7720 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.9e-06 57.0 113 27.4
Aa31LG5G23430 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.9e-06 57.0 113 31.0
Aqoxy5G01559 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.9e-06 57.0 115 27.0
BcaC03g18247 Brassica carinata HOM05D000003 ORTHO05D000004 3.9e-06 57.0 111 30.6
FvH4_4g09591 Fragaria vesca HOM05D000003 ORTHO05D000004 3.9e-06 57.0 102 33.3
Os03g0643433 Oryza sativa ssp. japonica HOM05D000003 ORTHO05D000004 3.9e-06 57.0 106 31.1
PSO017G5634 Papaver somniferum HOM05D000003 ORTHO05D000004 3.9e-06 57.0 96 29.2
PSO223G0058 Papaver somniferum HOM05D000003 ORTHO05D000004 3.9e-06 57.0 111 26.1
PSO782G1141 Papaver somniferum HOM05D000003 ORTHO05D008897 3.9e-06 57.0 108 33.3
QL08p015792 Quercus lobata HOM05D000003 ORTHO05D000004 3.9e-06 57.0 111 27.0
QL08p060724 Quercus lobata HOM05D000003 ORTHO05D000004 3.9e-06 57.0 112 31.2
QL10p005473 Quercus lobata HOM05D000230 ORTHO05D000176 3.9e-06 57.0 107 31.8
QL11p036849 Quercus lobata HOM05D000003 ORTHO05D000004 3.9e-06 57.0 114 31.6
QL12p039879 Quercus lobata HOM05D000003 ORTHO05D000004 3.9e-06 57.0 107 31.8
Aa31LG10G8080 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.1e-06 56.6 172 25.0
CANSAT25G0932 Cannabis sativa HOM05D000003 ORTHO05D000004 5.1e-06 56.6 111 28.8
Manes.09G048028 Manihot esculenta HOM05D000003 ORTHO05D000004 5.1e-06 56.6 106 30.2
Nn1g02475 Nelumbo nucifera HOM05D000003 ORTHO05D000004 5.1e-06 56.6 61 45.9
PSO170G3085 Papaver somniferum HOM05D000003 ORTHO05D000004 5.1e-06 56.6 97 33.0
PSO170G4986 Papaver somniferum HOM05D000003 ORTHO05D000004 5.1e-06 56.6 97 35.1
TPR.G23771 Trifolium pratense HOM05D006840 ORTHO05D008588 5.1e-06 56.6 158 23.4
Atru.chr4.1025 Acer truncatum HOM05D000003 ORTHO05D000004 6.7e-06 56.2 137 27.0
Aqoxy1G03002 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 6.7e-06 56.2 65 46.2
Aqoxy4G01680 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 6.7e-06 56.2 118 28.0
CANSAT11G0402 Cannabis sativa HOM05D000003 ORTHO05D000004 6.7e-06 56.2 165 29.1
CANSAT54G2709 Cannabis sativa HOM05D000003 ORTHO05D000004 6.7e-06 56.2 106 31.1
FvH4_2g04611 Fragaria vesca HOM05D000003 ORTHO05D000004 6.7e-06 56.2 92 31.5
Gohir.D05G098650 Gossypium hirsutum HOM05D000003 ORTHO05D000004 6.7e-06 56.2 126 27.8
Hma1.2p1_0035F.1_g021825 Hydrangea macrophylla HOM05D000003 ORTHO05D000004 6.7e-06 56.2 115 32.2
PSO170G6301 Papaver somniferum HOM05D000003 ORTHO05D000004 6.7e-06 56.2 104 30.8
PSO478G2477 Papaver somniferum HOM05D000003 ORTHO05D000004 6.7e-06 56.2 123 26.8
PSO782G4152 Papaver somniferum HOM05D000003 ORTHO05D000651 6.7e-06 56.2 112 30.4
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 6.7e-06 56.2 107 31.8
Aa31LG8G16480 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.7e-06 55.8 133 27.8
PSO541G3249 Papaver somniferum HOM05D000003 ORTHO05D000651 8.7e-06 55.8 114 28.1
PSO541G4893 Papaver somniferum HOM05D000003 ORTHO05D000004 8.7e-06 55.8 61 47.5


User provided reference genes

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