Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G666.14 Capsicum annuum HOM05D006111 ORTHO05D007683 3.3e-217 758.1 377 100.0
Nitab4.5_0001001g0030 Nicotiana tabacum HOM05D006111 ORTHO05D007683 6.5e-189 664.1 376 89.4
Peaxi162Scf00818g00127 Petunia axillaris HOM05D006111 ORTHO05D007683 3.0e-186 655.2 393 84.7
PGSC0003DMG400006635 Solanum tuberosum HOM05D006111 ORTHO05D007683 1.5e-185 652.9 367 88.8
Sopen02g001570 Solanum pennellii HOM05D006111 ORTHO05D007683 1.7e-181 639.4 364 88.2
Solyc02g005200.4 Solanum lycopersicum HOM05D006111 ORTHO05D007683 1.1e-180 636.7 364 87.6
Dinv43431 Davidia involucrata HOM05D006111 ORTHO05D007683 7.0e-175 617.5 382 78.3
Nitab4.5_0000139g0200 Nicotiana tabacum HOM05D006111 ORTHO05D007683 1.1e-172 610.1 378 83.3
QL04p008312 Quercus lobata HOM05D006111 ORTHO05D007683 5.7e-169 597.8 383 78.1
Eucgr.J01211 Eucalyptus grandis HOM05D006111 ORTHO05D007683 1.3e-168 596.7 386 75.6
RcHm_v2.0_Chr1g0316521 Rosa chinensis HOM05D006111 ORTHO05D007683 1.3e-168 596.7 378 78.0
MD02G1308600 Malus domestica HOM05D006111 ORTHO05D007683 3.1e-167 592.0 382 77.5
Duzib268G0420 Durio zibethinus HOM05D006111 ORTHO05D007683 4.1e-167 591.7 378 76.2
Thecc.01G409400 Theobroma cacao HOM05D006111 ORTHO05D007683 1.6e-166 589.7 378 75.7
CSS0012829 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 4.5e-166 588.2 382 74.9
CSS0034733 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 4.5e-166 588.2 382 74.9
MD07G1013000 Malus domestica HOM05D006111 ORTHO05D007683 5.9e-166 587.8 382 77.0
Oeu014586.1 Olea europaea HOM05D006111 ORTHO05D007683 1.0e-165 587.0 389 76.9
FvH4_7g01190 Fragaria vesca HOM05D006111 ORTHO05D007683 3.8e-165 585.1 377 77.2
FAN06G2641 Fragaria x ananassa HOM05D006111 ORTHO05D007683 3.8e-165 585.1 377 77.2
CiPaw.13G006200 Carya illinoinensis HOM05D006111 ORTHO05D007683 2.5e-164 582.4 381 75.3
Prupe.2G015400 Prunus persica HOM05D006111 ORTHO05D007683 3.2e-164 582.0 384 76.0
FAN03G2464 Fragaria x ananassa HOM05D006111 ORTHO05D007683 4.2e-164 581.6 379 77.0
FAN10G2658 Fragaria x ananassa HOM05D006111 ORTHO05D007683 4.2e-164 581.6 379 77.0
Gorai.004G171600 Gossypium raimondii HOM05D006111 ORTHO05D007683 5.5e-164 581.3 377 74.3
MBI02_g05669_MAGBIO Magnolia biondii HOM05D006111 ORTHO05D007683 1.6e-163 579.7 388 75.3
Manes.10G140800 Manihot esculenta HOM05D006111 ORTHO05D007683 1.6e-163 579.7 381 76.4
Gohir.D08G164600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 2.7e-163 578.9 377 74.0
SalBow6G4116 Salvia bowleyana HOM05D006111 ORTHO05D007683 4.7e-163 578.2 392 74.0
FAN01G0043 Fragaria x ananassa HOM05D006111 ORTHO05D007683 6.1e-163 577.8 379 76.5
PGR044G0412 Punica granatum HOM05D006111 ORTHO05D007683 6.1e-163 577.8 390 74.1
Nn7g36241 Nelumbo nucifera HOM05D006111 ORTHO05D007683 8.0e-163 577.4 390 74.9
Aqoxy1G00288 Aquilegia oxysepala HOM05D006111 ORTHO05D007683 1.0e-162 577.0 388 74.7
Migut.N01606 Erythranthe guttata HOM05D006111 ORTHO05D007683 1.0e-162 577.0 387 73.9
SalBow6G6970 Salvia bowleyana HOM05D006111 ORTHO05D007683 1.4e-162 576.6 392 73.7
Atru.chr11.2607 Acer truncatum HOM05D006111 ORTHO05D007683 1.8e-162 576.2 381 75.9
Cc01_g06700 Coffea canephora HOM05D006111 ORTHO05D007683 2.3e-162 575.9 379 73.6
EL10Ac2g04342 Beta vulgaris HOM05D006111 ORTHO05D007683 3.0e-162 575.5 387 75.2
Ciclev10031806m.g Citrus clementina HOM05D006111 ORTHO05D007683 4.0e-162 575.1 385 74.8
Potri.009G059600 Populus trichocarpa HOM05D006111 ORTHO05D007683 8.8e-162 573.9 384 74.2
Potri.009G059800 Populus trichocarpa HOM05D006111 ORTHO05D007683 2.6e-161 572.4 384 74.5
Sc10g0000130 Simmondsia chinensis HOM05D006111 ORTHO05D007683 4.4e-161 571.6 383 73.1
CANSAT80G0546 Cannabis sativa HOM05D006111 ORTHO05D007683 7.5e-161 570.9 383 74.7
Ah.10g038770 Amaranthus hybridus HOM05D006111 ORTHO05D007683 9.8e-161 570.5 388 73.2
TAR623G0061 Trochodendron aralioides HOM05D006111 ORTHO05D007683 1.3e-160 570.1 381 74.3
Hund21484 Selenicereus undatus HOM05D006111 ORTHO05D007683 5.4e-159 564.7 392 72.7
SGA_v2.0_scaffold24G10670 Striga asiatica HOM05D006111 ORTHO05D007683 7.0e-159 564.3 389 73.3
COL.COLO4_04864 Corchorus olitorius HOM05D006111 ORTHO05D007683 1.2e-158 563.5 382 73.6
TWI09G1338 Tripterygium wilfordii HOM05D006111 ORTHO05D007683 1.2e-158 563.5 382 72.8
MSTRG.17026 Avicennia marina HOM05D006111 ORTHO05D007683 1.6e-158 563.1 388 72.7
CsaV3_7G030960 Cucumis sativus L. HOM05D006111 ORTHO05D007683 2.0e-158 562.8 386 71.8
DCAR_015173 Daucus carota HOM05D006111 ORTHO05D007683 2.7e-158 562.4 381 73.2
THA.LOC104819080 Tarenaya hassleriana HOM05D006111 ORTHO05D007683 2.9e-157 558.9 382 72.3
ClCG09G004060 Citrullus lanatus HOM05D006111 ORTHO05D007683 2.5e-156 555.8 385 70.9
Lalb_Chr01g0015831 Lupinus albus HOM05D006111 ORTHO05D007683 5.6e-156 554.7 378 72.5
PSO339G0604 Papaver somniferum HOM05D006111 ORTHO05D007683 1.6e-155 553.1 386 71.8
MELO3C023560.2 Cucumis melo HOM05D006111 ORTHO05D007683 2.1e-155 552.7 402 68.9
PSO384G4428 Papaver somniferum HOM05D006111 ORTHO05D007683 1.0e-154 550.4 386 71.5
vmacro21191 Vaccinium macrocarpon HOM05D006111 ORTHO05D007683 1.0e-154 550.4 459 62.7
Thhalv10020943m.g Eutrema salsugineum HOM05D006111 ORTHO05D007683 4.0e-154 548.5 379 71.8
Sp3g06920 Schrenkiella parvula HOM05D006111 ORTHO05D007683 1.5e-153 546.6 382 71.5
HanXRQChr09g0260521 Helianthus annuus HOM05D006111 ORTHO05D007683 2.0e-153 546.2 361 73.4
Sed0027336 Sechium edule HOM05D006111 ORTHO05D007683 3.4e-153 545.4 391 69.3
GSVIVG01032129001 Vitis vinifera HOM05D006111 ORTHO05D007683 5.7e-153 544.7 297 85.9
CARHR082760 Cardamine hirsuta HOM05D006111 ORTHO05D007683 7.5e-153 544.3 379 71.5
AL3G19390 Arabidopsis lyrata HOM05D006111 ORTHO05D007683 2.9e-152 542.3 381 71.4
AT3G08010 Arabidopsis thaliana HOM05D006111 ORTHO05D007683 1.4e-151 540.0 381 71.1
Lsat_1_v5_gn_4_136121 Lactuca sativa HOM05D006111 ORTHO05D007683 1.4e-151 540.0 383 71.3
arahy.Tifrunner.gnm1.ann1.M31XXH Arachis hypogaea HOM05D006111 ORTHO05D007683 1.8e-151 539.7 385 71.2
arahy.Tifrunner.gnm1.ann1.YZE6TL Arachis hypogaea HOM05D006111 ORTHO05D007683 1.8e-151 539.7 385 71.2
Carub.0003s0759 Capsella rubella HOM05D006111 ORTHO05D007683 3.2e-151 538.9 379 70.7
Sabra09G0044000 Salix brachista HOM05D006111 ORTHO05D007683 4.6e-150 535.0 433 64.9
Lj3g0026579 Lotus japonicus HOM05D006111 ORTHO05D007683 2.3e-149 532.7 383 68.1
C03p43240 Brassica napus HOM05D006111 ORTHO05D007683 5.0e-149 531.6 378 70.1
Rhsim01G0128600 Rhododendron simsii HOM05D006111 ORTHO05D007683 9.5e-148 527.3 493 58.0
Cfa010790 Carpinus fangiana HOM05D006111 ORTHO05D007683 1.6e-147 526.6 378 69.6
Aa31LG5G18560 Aethionema arabicum HOM05D006111 ORTHO05D007683 6.2e-147 524.6 375 69.6
Ca_14461_v3 Cicer arietinum L. HOM05D006111 ORTHO05D007683 4.0e-146 521.9 381 67.7
ATR0332G055 Amborella trichopoda HOM05D006111 ORTHO05D007683 1.6e-142 510.0 379 67.0
unitig_749.g14328 Utricularia gibba HOM05D006111 ORTHO05D007683 2.7e-142 509.2 345 70.7
Medtr3g030950 Medicago truncatula HOM05D006111 ORTHO05D007683 3.9e-141 505.4 385 67.0
VMungo1080G1123 Vigna mungo HOM05D006111 ORTHO05D007683 1.9e-140 503.1 383 67.6
Cpa.g.sc125.25 Carica papaya HOM05D006111 ORTHO05D007683 4.3e-140 501.9 420 62.6
Glyma.15G275900 Glycine max HOM05D006111 ORTHO05D007683 9.5e-140 500.7 384 66.7
Phvul.005G024500 Phaseolus vulgaris HOM05D006111 ORTHO05D007683 1.2e-139 500.4 377 67.4
Glyma.10G089700 Glycine max HOM05D006111 ORTHO05D007683 1.5e-137 493.4 384 65.9
Lj5C169G9 Lonicera japonica HOM05D006111 ORTHO05D007683 2.6e-137 492.7 281 81.5
HPP92_009763 Vanilla planifolia HOM05D006111 ORTHO05D007683 5.8e-137 491.5 382 65.2
AUR62043480 Chenopodium quinoa HOM05D006111 ORTHO05D007683 1.4e-135 486.9 390 64.6
Os02g0610800 Oryza sativa ssp. japonica HOM05D006111 ORTHO05D007683 7.8e-134 481.1 304 73.4
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 1.7e-133 479.9 297 76.4
Psat5g208360 Pisum sativum HOM05D006111 ORTHO05D007683 9.5e-132 474.2 397 62.7
AUR62009394 Chenopodium quinoa HOM05D006111 ORTHO05D007683 8.9e-130 467.6 392 62.5
Psat3g069160 Pisum sativum HOM05D006111 ORTHO05D007683 2.0e-129 466.5 296 74.7
AUR62023076 Chenopodium quinoa HOM05D006111 ORTHO05D007683 1.7e-128 463.4 390 61.8
Actinidia21546 Actinidia chinensis HOM05D006111 ORTHO05D007683 8.1e-123 444.5 378 63.2
CDE05G1285 Ceratophyllum demersum HOM05D006111 ORTHO05D007683 5.2e-122 441.8 352 65.6
Haze_03183 Corylus avellana HOM05D006111 ORTHO05D007683 1.4e-114 417.2 319 67.1
BcaB03g11554 Brassica carinata HOM05D006111 ORTHO05D007683 1.8e-106 390.2 228 79.8
Pp3c6_22710 Physcomitrium patens HOM05D006111 ORTHO05D007683 2.4e-106 389.8 296 61.1
Pp3c5_6760 Physcomitrium patens HOM05D006111 ORTHO05D007683 6.9e-106 388.3 293 61.1
Mapoly0153s0005 Marchantia polymorpha HOM05D006111 ORTHO05D007683 1.7e-104 383.6 339 55.5
A03p35610 Brassica napus HOM05D006111 ORTHO05D007683 1.6e-99 367.1 213 79.8
BolC3t16593H Brassica oleracea HOM05D006111 ORTHO05D007683 1.6e-99 367.1 213 79.8
BraA03t12736Z Brassica rapa HOM05D006111 ORTHO05D007683 1.6e-99 367.1 213 79.8
AagrBONN_evm.TU.Sc2ySwM_344.1799 Anthoceros agrestis HOM05D006111 ORTHO05D007683 3.7e-99 365.9 293 57.3
Zm00001eb246820 Zea mays HOM05D006111 ORTHO05D007683 1.8e-98 363.6 226 73.0
Gohir.A08G143600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 2.1e-94 350.1 244 69.3
Medtr3g030975 Medicago truncatula HOM05D006111 ORTHO05D007683 1.5e-92 344.0 213 76.1
Actinidia20661 Actinidia chinensis HOM05D006111 ORTHO05D007683 4.6e-86 322.4 292 59.6
SMO353G0296 Selaginella moellendorffii HOM05D006111 ORTHO05D007683 3.9e-85 319.3 290 51.0
PRCOL_00003534 Prasinoderma coloniale HOM05D006111 ORTHO05D007683 1.7e-75 287.3 304 45.4
TPR.G35304 Trifolium pratense HOM05D006111 ORTHO05D007683 1.8e-74 283.9 230 62.2
Cre17.g702500 Chlamydomonas reinhardtii HOM05D006111 ORTHO05D007683 2.4e-74 283.5 285 46.7
HPP92_009753 Vanilla planifolia HOM05D006111 ORTHO05D007683 1.3e-72 277.7 177 74.6
MCO10G268 Micromonas commoda HOM05D006111 ORTHO05D007683 6.1e-70 268.9 278 47.1
Prupe.2G016000 Prunus persica HOM05D006111 ORTHO05D007683 3.9e-69 266.2 157 81.5
QL04p008446 Quercus lobata HOM05D006111 ORTHO05D007683 1.7e-59 234.2 135 83.7
A03p35600 Brassica napus HOM05D006111 ORTHO05D007683 4.1e-42 176.4 163 60.1
CBR_g5582 Chara braunii HOM05D006111 ORTHO05D007683 7.0e-42 175.6 161 52.2
SEGI_32608 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 5.9e-41 172.6 108 70.4
HanXRQChr12g0362881 Helianthus annuus HOM05D006111 ORTHO05D007683 8.3e-35 152.1 108 66.7
HPP92_009752 Vanilla planifolia HOM05D006111 ORTHO05D007683 2.0e-33 147.5 176 48.9
CBR_g5588 Chara braunii HOM05D006111 ORTHO05D007683 2.7e-33 147.1 97 69.1
SEGI_00353 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 2.7e-25 120.6 87 64.4
Medtr8g104810 Medicago truncatula HOM05D006111 ORTHO05D007683 3.6e-22 110.2 64 78.1
C03p43260 Brassica napus HOM05D006111 ORTHO05D007683 2.3e-16 90.9 48 83.3
BolC3t16595H Brassica oleracea HOM05D006111 ORTHO05D007683 2.3e-16 90.9 48 83.3
TPR.G36152 Trifolium pratense HOM05D006111 ORTHO05D007683 1.7e-11 74.7 106 45.3
TAR628G1549 Trochodendron aralioides HOM05D006111 ORTHO05D414729 1.6e-06 58.2 41 65.9


User provided reference genes

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