Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 1912.5 994 100.0
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 1494.2 1585 58.2
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 1281.9 1595 50.8
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 1279.6 1595 50.0
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 1184.1 1594 47.7
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 1156.7 1603 46.7
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 8.0e-271 937.6 1589 39.8
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 1.4e-270 936.8 1574 41.5
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 1.3e-265 920.2 1590 38.8
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 6.6e-265 917.9 1598 38.0
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 1.2e-263 913.7 1581 37.9
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 1.4e-259 900.2 1590 37.0
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 5.1e-257 891.7 1563 37.6
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 4.1e-251 872.1 1593 37.2
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 1.2e-250 870.5 1593 36.8
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 4.3e-248 862.1 1589 36.8
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.1e-247 859.8 1567 38.0
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 4.7e-247 858.6 1565 36.6
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 2.4e-246 856.3 1583 36.2
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 3.2e-243 845.9 1570 36.6
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 4.2e-243 845.5 1578 35.9
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 2.3e-241 839.7 1585 36.7
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 4.0e-238 828.9 1590 35.7
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 6.9e-238 828.2 1593 36.3
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 1.5e-237 827.0 1599 35.6
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 2.2e-236 823.2 1603 35.3
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 8.4e-236 821.2 1588 36.1
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 1.1e-235 820.8 1586 35.2
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 9.3e-235 817.8 1364 39.9
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 3.5e-234 815.8 1592 35.7
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 3.5e-234 815.8 1592 35.7
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 7.8e-234 814.7 1625 36.2
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 1.3e-231 807.4 1599 35.1
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 1.6e-231 807.0 1592 35.7
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 1.6e-231 807.0 1591 34.3
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 2.1e-231 806.6 1753 33.3
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 2.0e-229 800.0 1561 34.8
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 4.5e-229 798.9 1571 34.9
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 6.4e-228 795.0 1578 35.1
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 1.1e-227 794.3 1595 35.8
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 2.1e-226 790.0 1598 34.2
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 3.9e-225 785.8 1597 34.3
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 3.3e-224 782.7 1586 35.2
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 1.3e-223 780.8 1728 33.9
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 1.4e-222 777.3 1584 34.2
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 5.8e-221 771.9 1597 34.2
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 1.3e-220 770.8 1586 34.6
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 4.9e-220 768.8 1586 35.1
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 7.9e-218 761.5 1588 34.0
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 1.8e-217 760.4 1579 34.1
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 4.3e-216 755.7 1538 36.2
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 9.6e-216 754.6 1590 33.8
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 1.1e-214 751.1 1608 34.5
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 1.1e-214 751.1 1586 33.5
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 4.0e-214 749.2 1546 33.4
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 4.5e-213 745.7 1514 34.9
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 7.6e-213 745.0 1589 33.3
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 1.0e-212 744.6 1579 34.5
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 4.9e-212 742.3 637 57.5
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 6.5e-212 741.9 1534 34.7
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 1.9e-211 740.3 1538 34.9
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 4.2e-211 739.2 637 57.5
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 7.1e-211 738.4 1457 36.9
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 6.1e-210 735.3 1586 32.9
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 1.0e-209 734.6 1567 33.7
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 1.8e-209 733.8 1567 32.9
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 1.8e-209 733.8 1516 33.8
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 2.3e-209 733.4 1555 34.1
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 2.5e-208 729.9 1520 34.1
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 6.3e-207 725.3 1608 32.8
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 1.8e-206 723.8 1585 33.7
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 1.2e-205 721.1 1586 32.9
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 1.7e-204 717.2 1519 33.1
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 2.9e-204 716.5 1568 33.0
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 2.5e-203 713.4 1513 33.5
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 2.7e-202 709.9 1549 32.9
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 4.6e-202 709.1 1511 33.2
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 3.0e-201 706.4 1597 32.2
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 6.7e-201 705.3 1643 33.7
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 8.8e-201 704.9 1525 33.9
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 2.0e-200 703.7 1264 35.5
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 2.5e-200 703.4 1532 33.0
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 1.3e-199 701.0 1510 32.7
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 1.1e-198 698.0 636 56.3
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 4.5e-197 692.6 1530 33.1
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 5.0e-196 689.1 1163 36.9
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 4.8e-191 672.5 1730 30.9
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 3.1e-190 669.8 1641 31.1
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 2.0e-189 667.2 637 54.5
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 3.5e-189 666.4 637 54.2
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 7.7e-189 665.2 1638 31.6
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 9.4e-187 658.3 1505 32.2
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 5.9e-173 612.5 1588 31.9
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 2.3e-169 600.5 1604 30.5
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.7e-164 584.3 635 46.9
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.5e-163 581.3 1466 32.3
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 7.2e-163 578.9 1557 29.5
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 3.4e-160 570.1 475 59.8
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 5.7e-160 569.3 604 49.2
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 1.9e-155 554.3 1258 31.6
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 5.2e-153 546.2 637 44.3
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.8e-145 521.2 394 62.9
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 1.7e-143 514.6 637 41.8
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 2.9e-143 513.8 1591 27.3
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 8.6e-140 502.3 459 54.5
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 1.9e-139 501.1 1547 27.5
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 1.6e-138 498.0 636 41.4
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 5.2e-137 493.0 1548 27.5
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 6.8e-137 492.7 394 59.9
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 2.2e-103 381.3 1092 31.6
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 1.6e-101 375.2 963 32.8
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 2.5e-94 351.3 1337 26.6
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 6.5e-87 326.6 1085 30.6
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 3.9e-84 317.4 1092 29.2
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 4.5e-80 303.9 393 40.5
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 2.1e-77 295.0 595 41.5
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 6.7e-68 263.5 254 52.8
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 2.6e-67 261.5 747 30.1
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 5.9e-64 250.4 157 70.7
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 5.5e-62 243.8 231 52.4
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 5.7e-59 233.8 589 34.3
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 2.2e-58 231.9 176 61.4
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 5.4e-49 200.7 675 25.9
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 5.0e-47 194.1 222 44.1
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 5.4e-41 174.1 194 46.9
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 1.2e-37 162.9 497 34.6
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 2.1e-37 162.2 248 36.7
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 1.8e-36 159.1 354 31.1
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 1.9e-33 149.1 101 64.4
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.1e-28 133.3 68 88.2
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 8.9e-28 130.2 195 39.0
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 1.7e-26 125.9 275 44.7
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 3.5e-24 118.2 74 78.4
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 7.8e-24 117.1 297 38.0
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 1.1e-22 113.2 95 57.9
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 6.2e-21 107.5 102 52.9
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 1.8e-20 105.9 137 39.4
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 5.2e-20 104.4 219 32.9
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 2.2e-18 99.0 192 38.5
Actinidia36003 Actinidia chinensis HOM05D004072 ORTHO05D021063 1.6e-16 92.8 90 62.2
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 8.1e-13 80.5 410 28.5
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 6.8e-12 77.4 55 65.5
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 2.0e-11 75.9 116 38.8
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 7.6e-11 73.9 314 30.3
CSS0034048 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 9.9e-11 73.6 301 33.6
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 7.1e-09 67.4 62 51.6
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 1.2e-08 66.6 186 29.0
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 1.0e-07 63.5 50 62.0
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 1.7e-07 62.8 33 78.8
Actinidia04623 Actinidia chinensis HOM05D004072 ORTHO05D021063 2.5e-06 58.9 168 31.0
CBR_g34927 Chara braunii HOM05D000019 ORTHO05D000002 2.5e-06 58.9 119 30.3
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 9.6e-06 57.0 35 65.7


User provided reference genes

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