Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 0.0e+00 1184.1 596 100.0
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 0.0e+00 1088.6 598 92.3
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 0.0e+00 1082.4 598 91.8
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.3e-303 1045.8 607 86.8
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 3.1e-294 1014.6 587 87.6
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 1.9e-267 925.6 590 80.8
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 3.8e-244 848.2 593 72.3
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 5.2e-241 837.8 601 70.4
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 5.9e-237 824.3 591 69.9
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 4.4e-232 808.1 593 68.8
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 2.2e-231 805.8 589 69.3
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 1.6e-229 799.7 591 68.9
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 6.0e-229 797.7 595 69.6
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 1.0e-228 797.0 598 67.9
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 3.9e-228 795.0 587 68.0
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 1.1e-227 793.5 598 66.7
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 1.2e-226 790.0 600 68.0
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 2.3e-225 785.8 591 66.2
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 1.1e-222 776.9 600 67.3
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 2.4e-222 775.8 596 66.6
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 4.1e-222 775.0 593 66.6
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 3.5e-221 771.9 586 66.2
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 5.2e-217 758.1 591 65.7
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 8.9e-217 757.3 584 65.4
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 6.4e-215 751.1 625 64.3
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 2.4e-214 749.2 591 64.0
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 7.1e-214 747.7 618 62.9
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 4.6e-213 745.0 585 65.6
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 4.6e-213 745.0 589 63.5
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 7.8e-213 744.2 599 64.6
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 1.7e-212 743.0 585 65.3
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 3.0e-212 742.3 590 63.9
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 3.0e-212 742.3 578 64.4
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 6.6e-212 741.1 599 64.1
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 1.1e-211 740.3 560 65.7
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 2.5e-211 739.2 586 65.4
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 5.6e-211 738.0 586 63.8
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 9.5e-211 737.3 573 65.1
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 6.2e-210 734.6 590 62.9
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 2.0e-208 729.6 573 63.9
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 7.6e-208 727.6 581 62.3
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 2.9e-207 725.7 590 61.9
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 4.9e-207 724.9 578 63.1
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 1.4e-206 723.4 579 62.7
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 2.4e-206 722.6 516 70.0
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.7e-205 719.2 592 62.3
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 2.3e-204 716.1 592 62.3
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.0e-204 715.7 594 63.0
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 3.0e-204 715.7 516 69.2
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 1.9e-203 713.0 597 62.6
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 2.5e-203 712.6 578 63.0
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 3.3e-203 712.2 597 59.5
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 7.3e-203 711.1 603 61.4
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 1.2e-202 710.3 591 62.1
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 1.1e-201 707.2 599 61.1
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 1.8e-201 706.4 613 58.7
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.1e-201 705.7 591 62.4
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 9.0e-201 704.1 599 60.6
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 1.5e-200 703.4 593 61.4
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 3.4e-200 702.2 512 68.0
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 5.8e-200 701.4 573 62.7
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 7.6e-200 701.0 600 58.3
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 7.6e-200 701.0 591 62.1
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 9.9e-200 700.7 604 59.1
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 1.3e-199 700.3 597 58.3
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 1.7e-199 699.9 597 58.5
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 1.7e-199 699.9 603 58.2
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 1.7e-199 699.9 579 60.3
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 2.9e-199 699.1 597 58.0
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 6.4e-199 698.0 603 58.4
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 6.4e-199 698.0 600 58.2
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 6.4e-199 698.0 591 61.9
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 6.4e-199 698.0 787 50.2
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 9.3e-198 694.1 590 61.4
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 4.6e-197 691.8 596 58.1
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 6.6e-196 688.0 580 63.4
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 5.6e-195 684.9 600 58.2
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 2.1e-194 682.9 610 57.4
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 1.1e-193 680.6 580 60.5
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 4.0e-193 678.7 615 60.2
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 1.2e-192 677.2 598 57.9
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 1.2e-192 677.2 655 56.6
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 6.4e-191 671.4 599 57.4
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 1.4e-190 670.2 588 59.5
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 4.8e-186 655.2 524 61.1
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 9.6e-179 630.9 554 61.4
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 8.2e-178 627.9 484 64.9
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 1.8e-177 626.7 573 56.7
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 4.5e-176 622.1 564 57.8
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 1.3e-175 620.5 524 59.5
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 2.2e-170 603.2 603 52.7
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 5.0e-167 592.0 574 54.7
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.9e-166 590.1 599 53.8
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 7.7e-160 568.2 559 51.0
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 1.2e-157 560.8 470 63.2
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.8e-156 557.0 356 76.7
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 5.7e-155 552.0 612 51.0
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.2e-125 454.5 447 53.0
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 1.8e-121 440.7 504 45.6
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 1.6e-120 437.6 384 58.3
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 2.3e-119 433.7 567 43.0
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 2.8e-117 426.8 300 71.0
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 1.2e-112 411.4 571 41.0
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.9e-110 404.1 570 39.6
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 3.1e-108 396.7 335 59.1
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 1.7e-90 337.8 181 96.1
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.8e-85 319.7 279 60.6
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 1.6e-80 304.7 216 70.8
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 1.1e-78 298.5 216 72.7
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 2.0e-75 287.7 409 42.5
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 3.4e-75 287.0 278 54.3
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 3.4e-75 287.0 590 32.4
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 5.1e-71 273.1 293 45.7
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 6.2e-69 266.2 362 37.0
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.6e-53 214.9 172 65.1
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.0e-39 169.1 123 62.6
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.3e-37 162.2 122 67.2
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 5.3e-36 156.8 112 69.6
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 8.0e-32 142.9 114 62.3
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.8e-31 141.7 251 37.8
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 6.3e-29 133.3 103 64.1
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 4.5e-27 127.1 105 58.1
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 2.5e-25 121.3 69 81.2
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 5.5e-25 120.2 568 22.5
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 2.3e-23 114.8 374 27.5
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.5e-22 112.1 98 51.0
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 6.3e-21 106.7 162 37.7
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 8.3e-21 106.3 177 43.5
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 1.1e-20 105.9 75 61.3
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 2.4e-20 104.8 137 46.0
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 3.1e-20 104.4 79 58.2
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 3.1e-20 104.4 82 58.5
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 2.0e-19 101.7 126 44.4
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 2.8e-13 81.3 107 38.3
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 3.7e-13 80.9 225 28.9
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.1e-12 79.3 152 35.5
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 7.7e-11 73.2 138 37.0
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 2.3e-10 71.6 115 36.5
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 2.9e-10 71.2 58 63.8
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 3.8e-10 70.9 60 58.3
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 9.5e-09 66.2 82 47.6


User provided reference genes

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