Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G650.29 Capsicum annuum HOM05D012928 ORTHO05D003355 0.0e+00 2125.1 1165 100.0
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 0.0e+00 1082.0 1394 51.5
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 5.7e-300 1034.6 1400 50.2
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 1.1e-282 977.2 1400 47.3
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 1.7e-280 969.9 1400 47.1
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 2.5e-263 912.9 1019 57.1
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 3.6e-230 802.7 1231 45.7
CAN.G350.32 Capsicum annuum HOM05D012928 ORTHO05D003355 2.0e-39 169.1 103 84.5
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 5.7e-26 124.4 132 50.0
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 5.2e-19 101.3 130 43.1
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 1.5e-18 99.8 1341 22.7
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 4.4e-18 98.2 174 37.4
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 1.7e-17 96.3 128 41.4
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 2.2e-17 95.9 135 37.8
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 2.8e-17 95.5 300 29.0
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 4.9e-17 94.7 1219 22.3
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 1.1e-16 93.6 136 37.5
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.1e-16 93.6 141 39.0
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 1.1e-16 93.6 132 39.4
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.4e-16 93.2 131 38.9
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 7.0e-16 90.9 136 35.3
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 1.2e-15 90.1 135 37.8
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 1.2e-15 90.1 469 24.1
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 1.6e-15 89.7 156 36.5
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 2.0e-15 89.4 133 38.3
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 2.0e-15 89.4 128 41.4
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 2.7e-15 89.0 134 36.6
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 1.3e-14 86.7 140 36.4
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 1.7e-14 86.3 136 41.2
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 3.9e-14 85.1 130 37.7
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 6.6e-14 84.3 125 39.2
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 2.1e-12 79.3 128 35.9
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 3.6e-12 78.6 1290 21.8
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 3.6e-12 78.6 131 35.9
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 1.8e-11 76.3 134 35.8
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 1.8e-11 76.3 133 33.8
arahy.Tifrunner.gnm1.ann1.5I91Y5 Arachis hypogaea HOM05D015529 ORTHO05D015409 4.0e-11 75.1 377 26.5
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 4.0e-11 75.1 125 34.4
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 5.2e-11 74.7 148 33.1
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 8.9e-11 73.9 126 37.3
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 8.9e-11 73.9 198 29.3
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 2.0e-10 72.8 430 23.0
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 2.6e-10 72.4 135 32.6
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 9.8e-10 70.5 1356 23.8
arahy.Tifrunner.gnm1.ann1.VN6XRW Arachis hypogaea HOM05D015529 ORTHO05D015409 1.3e-09 70.1 58 50.0
arahy.Tifrunner.gnm1.ann1.1NC23U Arachis hypogaea HOM05D015529 ORTHO05D015409 2.9e-09 68.9 58 48.3
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 2.9e-09 68.9 134 29.1
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 3.7e-09 68.6 126 34.9
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 6.4e-09 67.8 1257 21.2
Oeu038657.1 Olea europaea HOM05D012928 ORTHO05D003355 1.1e-08 67.0 1228 23.7
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 1.4e-08 66.6 127 29.9
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 1.9e-08 66.2 130 33.1
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 4.1e-08 65.1 1211 23.5
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 7.0e-08 64.3 471 24.2
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 9.2e-08 63.9 50 44.0
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 9.2e-08 63.9 124 29.0
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 1.2e-07 63.5 1203 22.0
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 1.2e-07 63.5 275 25.1
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 1.2e-07 63.5 275 25.1
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 1.2e-07 63.5 275 25.1
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 1.6e-07 63.2 124 32.3
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.6e-07 63.2 226 24.3
unitig_899.g14722 Utricularia gibba HOM05D012928 ORTHO05D003355 1.6e-07 63.2 53 41.5
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 2.0e-07 62.8 53 41.5
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.7e-07 62.4 216 25.0
Lj6g0020676 Lotus japonicus HOM05D005863 ORTHO05D003355 3.5e-07 62.0 49 44.9
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 6.0e-07 61.2 151 27.2
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 7.8e-07 60.8 122 29.5
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 7.8e-07 60.8 137 28.5
RcHm_v2.0_Chr4g0432241 Rosa chinensis HOM05D005863 ORTHO05D017031 7.8e-07 60.8 125 35.2
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 7.8e-07 60.8 1341 21.1
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 1.3e-06 60.1 124 29.8
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 1.7e-06 59.7 124 29.0
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 1.7e-06 59.7 1397 21.8
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 1.7e-06 59.7 50 46.0
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.3e-06 59.3 184 27.2
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 2.3e-06 59.3 323 22.0
Dinv10342 Davidia involucrata HOM05D005863 ORTHO05D003355 2.3e-06 59.3 50 40.0
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 2.3e-06 59.3 132 28.0
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 2.3e-06 59.3 51 41.2
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 3.0e-06 58.9 159 28.9
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 3.0e-06 58.9 122 27.0
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 3.9e-06 58.5 105 28.6
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 5.0e-06 58.2 150 29.3
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 5.0e-06 58.2 69 33.3
arahy.Tifrunner.gnm1.ann1.Q7CAJS Arachis hypogaea HOM05D015529 ORTHO05D015409 6.6e-06 57.8 372 25.3
arahy.Tifrunner.gnm1.ann1.ZHX2UW Arachis hypogaea HOM05D015529 ORTHO05D015409 6.6e-06 57.8 372 25.3
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 6.6e-06 57.8 49 40.8
Rhsim10G0199400 Rhododendron simsii HOM05D005863 ORTHO05D003355 8.6e-06 57.4 88 30.7


User provided reference genes

Program Settings