Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G650.26 Capsicum annuum HOM05D003549 ORTHO05D004223 1.7e-42 175.6 91 100.0
CAN.G208.13 Capsicum annuum HOM05D003549 ORTHO05D004223 5.9e-19 97.4 50 94.0
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 5.5e-17 90.9 55 85.5
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 5.5e-17 90.9 55 85.5
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 3.6e-16 88.2 49 87.8
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 3.6e-16 88.2 49 87.8
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 1.0e-15 86.7 49 85.7
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.4e-15 86.3 55 76.4
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 3.0e-15 85.1 55 81.8
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 1.1e-14 83.2 55 70.9
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 3.3e-14 81.6 49 79.6
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 9.7e-14 80.1 52 76.9
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 9.7e-14 80.1 49 79.6
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 1.7e-13 79.3 61 68.9
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 3.7e-13 78.2 43 90.7
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 3.7e-13 78.2 47 80.9
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 6.3e-13 77.4 49 79.6
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 6.3e-13 77.4 48 79.2
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 6.3e-13 77.4 48 79.2
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 1.4e-12 76.3 55 76.4
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 1.4e-12 76.3 48 77.1
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 2.4e-12 75.5 55 69.1
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 3.1e-12 75.1 55 67.3
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 4.1e-12 74.7 51 70.6
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 4.1e-12 74.7 49 75.5
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 4.1e-12 74.7 55 74.5
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 5.3e-12 74.3 49 75.5
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 5.3e-12 74.3 49 75.5
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 5.3e-12 74.3 49 77.6
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 5.3e-12 74.3 49 75.5
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 5.3e-12 74.3 49 75.5
Sopen12g011080 Solanum pennellii HOM05D003549 ORTHO05D004223 5.3e-12 74.3 45 82.2
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 6.9e-12 73.9 49 75.5
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.9e-12 73.9 49 75.5
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.9e-12 73.9 49 75.5
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.9e-12 73.9 49 75.5
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 6.9e-12 73.9 49 75.5
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 9.1e-12 73.6 46 76.1
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 1.2e-11 73.2 55 72.7
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 1.2e-11 73.2 49 75.5
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.2e-11 73.2 55 70.9
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.2e-11 73.2 55 70.9
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 1.5e-11 72.8 49 75.5
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 1.5e-11 72.8 49 75.5
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 1.5e-11 72.8 49 75.5
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 2.0e-11 72.4 47 74.5
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 2.0e-11 72.4 49 73.5
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 3.4e-11 71.6 49 73.5
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 3.4e-11 71.6 49 73.5
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 4.5e-11 71.2 49 75.5
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 4.5e-11 71.2 48 77.1
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 4.5e-11 71.2 49 69.4
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 5.9e-11 70.9 45 77.8
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 5.9e-11 70.9 55 67.3
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 7.7e-11 70.5 52 67.3
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 7.7e-11 70.5 45 75.6
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 1.0e-10 70.1 45 73.3
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 1.0e-10 70.1 50 74.0
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 1.0e-10 70.1 49 71.4
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 1.3e-10 69.7 49 73.5
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 1.3e-10 69.7 48 75.0
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.3e-10 69.7 51 68.6
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 2.2e-10 68.9 49 73.5
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 2.2e-10 68.9 49 71.4
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 3.8e-10 68.2 48 72.9
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 3.8e-10 68.2 44 75.0
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 5.0e-10 67.8 49 71.4
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 5.0e-10 67.8 49 71.4
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 5.0e-10 67.8 46 69.6
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 6.5e-10 67.4 43 79.1
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 6.5e-10 67.4 46 71.7
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 6.5e-10 67.4 45 73.3
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 8.5e-10 67.0 49 71.4
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 8.5e-10 67.0 52 63.5
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 1.4e-09 66.2 45 71.1
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 1.4e-09 66.2 48 70.8
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 1.4e-09 66.2 49 71.4
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.4e-09 66.2 55 63.6
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 1.9e-09 65.9 45 71.1
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 1.9e-09 65.9 44 70.5
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.9e-09 65.9 50 76.0
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.5e-09 65.5 46 71.7
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.5e-09 65.5 46 71.7
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.5e-09 65.5 46 71.7
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.5e-09 65.5 46 71.7
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 2.5e-09 65.5 49 69.4
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 2.5e-09 65.5 49 69.4
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 4.2e-09 64.7 56 64.3
Gohir.D07G065000 Gossypium hirsutum HOM05D003549 ORTHO05D004223 4.2e-09 64.7 49 67.3
Gorai.001G068500 Gossypium raimondii HOM05D003549 ORTHO05D004223 4.2e-09 64.7 49 67.3
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 5.5e-09 64.3 56 60.7
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 5.5e-09 64.3 46 69.6
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 5.5e-09 64.3 46 69.6
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 5.5e-09 64.3 49 69.4
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 5.5e-09 64.3 48 58.3
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 7.2e-09 63.9 51 66.7
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 9.4e-09 63.5 49 67.3
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 9.4e-09 63.5 49 69.4
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 9.4e-09 63.5 49 69.4
CANSAT64G1109 Cannabis sativa HOM05D003549 ORTHO05D004223 9.4e-09 63.5 45 68.9
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 1.6e-08 62.8 46 67.4
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 2.1e-08 62.4 49 69.4
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 2.1e-08 62.4 55 61.8
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 2.7e-08 62.0 48 66.7
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 2.7e-08 62.0 56 64.3
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 3.6e-08 61.6 45 66.7
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 3.6e-08 61.6 45 66.7
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 3.6e-08 61.6 50 74.0
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 3.6e-08 61.6 45 66.7
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 3.6e-08 61.6 49 69.4
HPP92_002194 Vanilla planifolia HOM05D003549 ORTHO05D004223 3.6e-08 61.6 49 61.2
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 4.7e-08 61.2 55 63.6
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 4.7e-08 61.2 55 56.4
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 4.7e-08 61.2 51 66.7
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 6.1e-08 60.8 50 62.0
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 7.9e-08 60.5 37 75.7
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 7.9e-08 60.5 48 68.8
Gohir.D12G274100 Gossypium hirsutum HOM05D003549 ORTHO05D004223 1.0e-07 60.1 39 74.4
Gorai.008G294500 Gossypium raimondii HOM05D003549 ORTHO05D004223 1.0e-07 60.1 39 74.4
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 1.0e-07 60.1 49 59.2
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 1.0e-07 60.1 49 65.3
BolC2t09796H Brassica oleracea HOM05D003549 ORTHO05D004223 1.4e-07 59.7 57 63.2
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 1.4e-07 59.7 40 75.0
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 1.4e-07 59.7 40 75.0
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 1.4e-07 59.7 40 75.0
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 1.8e-07 59.3 43 72.1
COL.COLO4_34052 Corchorus olitorius HOM05D003549 ORTHO05D004223 2.3e-07 58.9 49 67.3
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 2.3e-07 58.9 39 74.4
Carub.0003s3029 Capsella rubella HOM05D003549 ORTHO05D004223 3.0e-07 58.5 47 63.8
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 3.9e-07 58.2 46 65.2
Hma1.2p1_0967F.1_g242260 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 3.9e-07 58.2 64 51.6
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 3.9e-07 58.2 45 62.2
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 5.1e-07 57.8 48 64.6
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 5.1e-07 57.8 51 66.7
Os01g0273000 Oryza sativa ssp. japonica HOM05D003549 ORTHO05D004223 5.1e-07 57.8 56 60.7
Aqoxy3G00999 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 1.1e-06 56.6 50 60.0
AT5G45010 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 1.5e-06 56.2 45 62.2
Gohir.A12G273400 Gossypium hirsutum HOM05D003549 ORTHO05D004223 1.5e-06 56.2 37 73.0
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 1.5e-06 56.2 42 69.0
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 2.0e-06 55.8 43 62.8
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 3.3e-06 55.1 50 64.0
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 3.3e-06 55.1 50 64.0
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 3.3e-06 55.1 50 64.0
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 3.3e-06 55.1 50 64.0
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 4.4e-06 54.7 47 63.8
AUR62036487 Chenopodium quinoa HOM05D003549 ORTHO05D004223 5.7e-06 54.3 39 66.7
Peaxi162Scf00548g00225 Petunia axillaris HOM05D003549 ORTHO05D004223 7.4e-06 53.9 31 80.6
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 9.7e-06 53.5 45 62.2


User provided reference genes

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