Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G65.65 Capsicum annuum HOM05D006168 ORTHO05D007602 1.2e-52 209.5 107 100.0
Peaxi162Scf00643g00537 Petunia axillaris HOM05D006168 ORTHO05D007602 5.2e-43 177.6 101 91.1
Solyc06g072170.2 Solanum lycopersicum HOM05D006168 ORTHO05D007602 1.3e-41 172.9 101 88.1
Sopen06g028470 Solanum pennellii HOM05D006168 ORTHO05D007602 1.3e-41 172.9 101 88.1
PGSC0003DMG400027059 Solanum tuberosum HOM05D006168 ORTHO05D007602 2.2e-41 172.2 101 87.1
CSS0046866 Camellia sinensis var. sinensis HOM05D006168 ORTHO05D007602 6.2e-36 154.1 95 77.9
HanXRQChr14g0428251 Helianthus annuus HOM05D006168 ORTHO05D007602 1.1e-35 153.3 102 73.5
ECA238G2000 Erigeron canadensis HOM05D006168 ORTHO05D007602 1.4e-35 152.9 105 73.3
Lsat_1_v5_gn_2_6441 Lactuca sativa HOM05D006168 ORTHO05D007602 5.2e-35 151.0 100 73.0
Cc02_g29290 Coffea canephora HOM05D006168 ORTHO05D007602 9.0e-35 150.2 94 78.7
Dinv03501 Davidia involucrata HOM05D006168 ORTHO05D007602 4.4e-34 147.9 99 73.7
Dinv03506 Davidia involucrata HOM05D006168 ORTHO05D007602 4.4e-34 147.9 99 73.7
GSVIVG01024249001 Vitis vinifera HOM05D006168 ORTHO05D007602 7.6e-34 147.1 98 71.4
CANSAT35G1332 Cannabis sativa HOM05D006168 ORTHO05D007602 1.7e-33 146.0 95 73.7
MSTRG.4316 Avicennia marina HOM05D006168 ORTHO05D007602 2.9e-33 145.2 101 73.3
Sabra04G0045100 Salix brachista HOM05D006168 ORTHO05D007602 6.4e-33 144.1 94 72.3
ECA238G2968 Erigeron canadensis HOM05D000092 ORTHO05D000042 8.4e-33 143.7 83 83.1
Prupe.5G244900 Prunus persica HOM05D006168 ORTHO05D007602 8.4e-33 143.7 101 68.3
CiPaw.16G075600 Carya illinoinensis HOM05D006168 ORTHO05D007602 1.4e-32 142.9 94 73.4
Potri.004G067300 Populus trichocarpa HOM05D006168 ORTHO05D007602 1.9e-32 142.5 94 71.3
Rhsim12G0137000 Rhododendron simsii HOM05D006168 ORTHO05D007602 1.9e-32 142.5 83 83.1
BolC3t16418H Brassica oleracea HOM05D006168 ORTHO05D007602 3.2e-32 141.7 93 74.2
BraA03t12572Z Brassica rapa HOM05D006168 ORTHO05D007602 4.2e-32 141.4 93 74.2
MELO3C002180.2 Cucumis melo HOM05D006168 ORTHO05D007602 4.2e-32 141.4 101 68.3
Migut.D02066 Erythranthe guttata HOM05D006168 ORTHO05D007602 5.4e-32 141.0 102 70.6
EL10Ac8g18962 Beta vulgaris HOM05D006168 ORTHO05D007602 7.1e-32 140.6 94 76.6
Duzib114G0883 Durio zibethinus HOM05D006168 ORTHO05D007602 7.1e-32 140.6 97 71.1
Manes.02G226600 Manihot esculenta HOM05D006168 ORTHO05D007602 7.1e-32 140.6 91 73.6
Aqoxy2G03978 Aquilegia oxysepala HOM05D006168 ORTHO05D007602 9.3e-32 140.2 98 71.4
AUR62028326 Chenopodium quinoa HOM05D006168 ORTHO05D007602 9.3e-32 140.2 96 74.0
CsaV3_1G007610 Cucumis sativus L. HOM05D006168 ORTHO05D007602 9.3e-32 140.2 101 68.3
Duzib128G1786 Durio zibethinus HOM05D006168 ORTHO05D007602 9.3e-32 140.2 94 71.3
ClCG01G014720 Citrullus lanatus HOM05D006168 ORTHO05D007602 1.2e-31 139.8 101 68.3
DCAR_011406 Daucus carota HOM05D006168 ORTHO05D007602 1.2e-31 139.8 83 80.7
Gohir.D05G295400 Gossypium hirsutum HOM05D006168 ORTHO05D007602 1.2e-31 139.8 94 71.3
Ah.14g084700 Amaranthus hybridus HOM05D006168 ORTHO05D007602 1.6e-31 139.4 92 76.1
Gohir.A05G294800 Gossypium hirsutum HOM05D006168 ORTHO05D007602 2.1e-31 139.0 94 71.3
Nn3g18550 Nelumbo nucifera HOM05D006168 ORTHO05D007602 2.1e-31 139.0 96 72.9
PGR083G1429 Punica granatum HOM05D006168 ORTHO05D007602 2.7e-31 138.7 100 71.0
Glyma.10G174000 Glycine max HOM05D006168 ORTHO05D007602 3.5e-31 138.3 95 73.7
CDE04G1298 Ceratophyllum demersum HOM05D006168 ORTHO05D007602 4.6e-31 137.9 97 74.2
vmacro16399 Vaccinium macrocarpon HOM05D006168 ORTHO05D007602 7.8e-31 137.1 82 80.5
Atru.chr9.17 Acer truncatum HOM05D006168 ORTHO05D007602 1.0e-30 136.7 84 79.8
ECA238G0114 Erigeron canadensis HOM05D006168 ORTHO05D007602 1.0e-30 136.7 97 71.1
ECA238G1897 Erigeron canadensis HOM05D006168 ORTHO05D007602 1.0e-30 136.7 97 71.1
SGA_v2.0_scaffold387G50509 Striga asiatica HOM05D006168 ORTHO05D007602 1.0e-30 136.7 99 71.7
COL.COLO4_12167 Corchorus olitorius HOM05D006168 ORTHO05D007602 1.3e-30 136.3 93 69.9
Glyma.20G216400 Glycine max HOM05D006168 ORTHO05D007602 1.3e-30 136.3 95 72.6
Thecc.10G078900 Theobroma cacao HOM05D006168 ORTHO05D007602 1.7e-30 136.0 90 72.2
Medtr1g077570 Medicago truncatula HOM05D006168 ORTHO05D007602 2.3e-30 135.6 96 74.0
Gorai.009G312100 Gossypium raimondii HOM05D006168 ORTHO05D007602 3.0e-30 135.2 84 77.4
Lj5g0014337 Lotus japonicus HOM05D006168 ORTHO05D007602 3.0e-30 135.2 96 69.8
TWI81G0790 Tripterygium wilfordii HOM05D006168 ORTHO05D007602 3.0e-30 135.2 102 67.6
AUR62025335 Chenopodium quinoa HOM05D006168 ORTHO05D007602 5.1e-30 134.4 83 80.7
RcHm_v2.0_Chr7g0176961 Rosa chinensis HOM05D006168 ORTHO05D007602 6.6e-30 134.0 97 70.1
Hund08905 Selenicereus undatus HOM05D006168 ORTHO05D007602 6.6e-30 134.0 93 71.0
THA.LOC104818656 Tarenaya hassleriana HOM05D006168 ORTHO05D007602 6.6e-30 134.0 102 68.6
CARHR079400 Cardamine hirsuta HOM05D006168 ORTHO05D007602 8.7e-30 133.7 92 71.7
CDE08G0644 Ceratophyllum demersum HOM05D006168 ORTHO05D007602 8.7e-30 133.7 99 72.7
Nitab4.5_0000477g0160 Nicotiana tabacum HOM05D006168 ORTHO05D007602 1.1e-29 133.3 85 81.2
Sp3g03900 Schrenkiella parvula HOM05D006168 ORTHO05D007602 1.1e-29 133.3 92 71.7
Sed0019180 Sechium edule HOM05D006168 ORTHO05D007602 1.5e-29 132.9 100 66.0
Ciclev10022597m.g Citrus clementina HOM05D006168 ORTHO05D007602 1.9e-29 132.5 101 64.4
Eucgr.H00657 Eucalyptus grandis HOM05D006168 ORTHO05D007602 1.9e-29 132.5 88 73.9
PSO063G5228 Papaver somniferum HOM05D006168 ORTHO05D007602 4.3e-29 131.3 95 68.4
Phvul.L006301 Phaseolus vulgaris HOM05D006168 ORTHO05D007602 4.3e-29 131.3 94 69.1
unitig_21.g20432 Utricularia gibba HOM05D006168 ORTHO05D007602 4.3e-29 131.3 100 70.0
Ca_09928_v3 Cicer arietinum L. HOM05D006168 ORTHO05D007602 5.6e-29 131.0 96 71.9
Lalb_Chr21g0311691 Lupinus albus HOM05D006168 ORTHO05D007602 5.6e-29 131.0 97 68.0
Haze_18408 Corylus avellana HOM05D006168 ORTHO05D007602 7.3e-29 130.6 95 68.4
Thhalv10021722m.g Eutrema salsugineum HOM05D006168 ORTHO05D007602 7.3e-29 130.6 92 72.8
VMungo0720G1915 Vigna mungo HOM05D006168 ORTHO05D007602 7.3e-29 130.6 94 69.1
Nitab4.5_0002771g0020 Nicotiana tabacum HOM05D006168 ORTHO05D007602 9.6e-29 130.2 83 80.7
Psat6g054520 Pisum sativum HOM05D006168 ORTHO05D007602 1.6e-28 129.4 98 66.3
Cfa017805 Carpinus fangiana HOM05D006168 ORTHO05D007602 3.6e-28 128.3 96 66.7
QL10p033704 Quercus lobata HOM05D006168 ORTHO05D007602 8.1e-28 127.1 83 75.9
Aa31LG5G15370 Aethionema arabicum HOM05D006168 ORTHO05D007602 1.4e-27 126.3 92 69.6
ATR0124G011 Amborella trichopoda HOM05D006168 ORTHO05D007602 1.4e-27 126.3 86 72.1
FvH4_5g18550 Fragaria vesca HOM05D006168 ORTHO05D007602 2.4e-27 125.6 101 62.4
FAN04G0186 Fragaria x ananassa HOM05D006168 ORTHO05D007602 2.4e-27 125.6 101 62.4
FAN18G0639 Fragaria x ananassa HOM05D006168 ORTHO05D007602 2.4e-27 125.6 101 62.4
TAR629G1867 Trochodendron aralioides HOM05D006168 ORTHO05D007602 3.1e-27 125.2 107 60.7
HPP92_020852 Vanilla planifolia HOM05D006168 ORTHO05D007602 4.0e-27 124.8 99 66.7
FAN08G3581 Fragaria x ananassa HOM05D006168 ORTHO05D007602 6.9e-27 124.0 101 61.4
MBI06_g12548_MAGBIO Magnolia biondii HOM05D006168 ORTHO05D007602 1.2e-26 123.2 97 66.0
MD06G1240400 Malus domestica HOM05D006168 ORTHO05D007602 7.6e-26 120.6 102 59.8
SEGI_05677 Sequoiadendron giganteum HOM05D006168 ORTHO05D007602 7.6e-26 120.6 94 62.8
AL3G15460 Arabidopsis lyrata HOM05D006168 ORTHO05D007602 6.4e-25 117.5 92 65.2
C05p62160 Brassica napus HOM05D006168 ORTHO05D007602 2.4e-24 115.5 93 63.4
BolC5t34874H Brassica oleracea HOM05D006168 ORTHO05D007602 2.4e-24 115.5 93 63.4
AT3G05070 Arabidopsis thaliana HOM05D006168 ORTHO05D007602 5.4e-24 114.4 92 64.1
Carub.0003s0432 Capsella rubella HOM05D006168 ORTHO05D007602 9.3e-24 113.6 92 64.1
A05p42500 Brassica napus HOM05D006168 ORTHO05D007602 2.1e-23 112.5 93 61.3
BraA05t23002Z Brassica rapa HOM05D006168 ORTHO05D007602 2.1e-23 112.5 93 61.3
MD14G1246600 Malus domestica HOM05D006168 ORTHO05D007602 2.1e-23 112.5 101 56.4
Oeu034422.1 Olea europaea HOM05D006168 ORTHO05D007602 3.5e-23 111.7 81 70.4
Os06g0730800 Oryza sativa ssp. japonica HOM05D006168 ORTHO05D007602 7.9e-23 110.5 95 60.0
AagrBONN_evm.TU.Sc2ySwM_368.389 Anthoceros agrestis HOM05D006168 ORTHO05D007602 6.7e-22 107.5 92 58.7
BcaB04g19282 Brassica carinata HOM05D006168 ORTHO05D007602 8.7e-22 107.1 85 68.2
Pp3c19_22150 Physcomitrium patens HOM05D006168 ORTHO05D007602 2.5e-21 105.5 99 55.6
Zm00001eb228960 Zea mays HOM05D006168 ORTHO05D007602 2.5e-21 105.5 91 58.2
SalBow8G4549 Salvia bowleyana HOM05D006168 ORTHO05D007602 5.6e-21 104.4 77 70.1
BcaC05g29992 Brassica carinata HOM05D006168 ORTHO05D007602 1.3e-20 103.2 95 61.1
RcHm_v2.0_Chr5g0006211 Rosa chinensis HOM05D006168 ORTHO05D007602 6.9e-19 97.4 102 52.9
Potri.017G154100 Populus trichocarpa HOM05D006168 ORTHO05D007602 2.0e-18 95.9 90 55.6
SMO147G0110 Selaginella moellendorffii HOM05D006168 ORTHO05D007602 2.6e-18 95.5 79 60.8
Sed0015845 Sechium edule HOM05D006168 ORTHO05D007602 3.4e-18 95.1 86 62.8
arahy.Tifrunner.gnm1.ann1.52MA05 Arachis hypogaea HOM05D006168 ORTHO05D007602 4.5e-18 94.7 82 61.0
Mapoly0133s0024 Marchantia polymorpha HOM05D006168 ORTHO05D007602 4.5e-18 94.7 83 54.2
FvH4_3g03920 Fragaria vesca HOM05D006168 ORTHO05D007602 4.2e-16 88.2 92 52.2
FAN11G1802 Fragaria x ananassa HOM05D006168 ORTHO05D007602 4.2e-16 88.2 92 52.2
CBR_g57849 Chara braunii HOM05D006168 ORTHO05D007602 5.5e-16 87.8 105 45.7
FAN21G2556 Fragaria x ananassa HOM05D006168 ORTHO05D007602 7.1e-16 87.4 92 52.2
FAN16G2203 Fragaria x ananassa HOM05D006168 ORTHO05D007602 1.6e-15 86.3 95 50.5
FAN25G2877 Fragaria x ananassa HOM05D006168 ORTHO05D007602 2.1e-15 85.9 92 51.1
TPR.G8871 Trifolium pratense HOM05D006168 ORTHO05D007602 5.1e-14 81.3 56 75.0
BcaC01g04336 Brassica carinata HOM05D006168 ORTHO05D007602 4.3e-13 78.2 47 74.5
Cre12.g518300 Chlamydomonas reinhardtii HOM05D006168 ORTHO05D007602 6.2e-12 74.3 87 47.1
arahy.Tifrunner.gnm1.ann1.S1M3RU Arachis hypogaea HOM05D006168 ORTHO05D007602 3.4e-10 68.6 57 54.4
Sc15g0000010 Simmondsia chinensis HOM05D006168 ORTHO05D007602 1.4e-08 63.2 42 69.0
FAN13G0455 Fragaria x ananassa HOM05D006168 ORTHO05D007602 1.2e-07 60.1 45 57.8
TPR.G35595 Trifolium pratense HOM05D006168 ORTHO05D007602 1.2e-07 60.1 43 62.8
MCO12G027 Micromonas commoda HOM05D006168 ORTHO05D007602 3.5e-07 58.5 95 40.0


User provided reference genes

Program Settings