Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G65.28 Capsicum annuum HOM05D003666 ORTHO05D004770 1.2e-68 263.1 135 100.0
Solyc00g013180.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 2.3e-67 258.8 135 98.5
Sopen11g018270 Solanum pennellii HOM05D003666 ORTHO05D004770 2.3e-67 258.8 135 98.5
Lj2A1228G69 Lonicera japonica HOM05D003666 ORTHO05D004770 8.6e-67 256.9 135 97.8
Solyc00g500187.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 4.3e-66 254.6 132 98.5
Solyc00g500251.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 4.3e-66 254.6 132 98.5
unitig_87.g28023 Utricularia gibba HOM05D003666 ORTHO05D004770 4.0e-64 248.1 132 95.5
AL3G44310 Arabidopsis lyrata HOM05D003666 ORTHO05D004770 2.6e-63 245.4 135 94.1
DCAR_032432 Daucus carota HOM05D003666 ORTHO05D004770 4.4e-63 244.6 129 96.9
RcHm_v2.0_MTg0498651 Rosa chinensis HOM05D003666 ORTHO05D004770 5.7e-63 244.2 133 94.7
Lalb_Chr00c24g0407361 Lupinus albus HOM05D003666 ORTHO05D004770 1.7e-62 242.7 135 93.3
Lalb_Chr01g0010981 Lupinus albus HOM05D003666 ORTHO05D004770 1.7e-62 242.7 135 93.3
Sp3g25750 Schrenkiella parvula HOM05D003666 ORTHO05D004770 1.7e-62 242.7 135 93.3
Ah.10g028210 Amaranthus hybridus HOM05D003666 ORTHO05D004770 2.9e-62 241.9 135 92.6
Ah.10g028760 Amaranthus hybridus HOM05D003666 ORTHO05D004770 2.9e-62 241.9 135 92.6
AUR62042334 Chenopodium quinoa HOM05D003666 ORTHO05D004770 2.9e-62 241.9 135 92.6
Nn1g09940 Nelumbo nucifera HOM05D003666 ORTHO05D004770 6.4e-62 240.7 135 92.6
Aa31csc553G50 Aethionema arabicum HOM05D003666 ORTHO05D004770 1.1e-61 240.0 133 93.2
Medtr0082s0060 Medicago truncatula HOM05D003666 ORTHO05D004770 1.8e-61 239.2 134 92.5
PSO210G0035 Papaver somniferum HOM05D003666 ORTHO05D004770 3.2e-61 238.4 129 94.6
arahy.Tifrunner.gnm1.ann1.DQZY30 Arachis hypogaea HOM05D003666 ORTHO05D004770 7.0e-61 237.3 133 92.5
arahy.Tifrunner.gnm1.ann1.G61VPX Arachis hypogaea HOM05D003666 ORTHO05D004770 7.0e-61 237.3 133 92.5
LjContig00439g0017912 Lotus japonicus HOM05D003666 ORTHO05D004770 9.2e-61 236.9 133 92.5
LjContig00439g0019818 Lotus japonicus HOM05D003666 ORTHO05D004770 9.2e-61 236.9 133 92.5
ATMG00580 Arabidopsis thaliana HOM05D003666 ORTHO05D004770 3.5e-60 235.0 129 93.8
Nitab4.5_0000172g0090 Nicotiana tabacum HOM05D003666 ORTHO05D004770 3.5e-60 235.0 132 91.7
Potri.007G061921 Populus trichocarpa HOM05D003666 ORTHO05D004770 3.5e-60 235.0 129 93.8
Sed0020058 Sechium edule HOM05D003666 ORTHO05D004770 1.3e-59 233.0 132 90.9
Nn1g10170 Nelumbo nucifera HOM05D003666 ORTHO05D004770 8.6e-59 230.3 129 92.2
BraSC177t45766Z Brassica rapa HOM05D003666 ORTHO05D004770 4.3e-58 228.0 127 92.9
BraSC77t46648Z Brassica rapa HOM05D003666 ORTHO05D004770 4.3e-58 228.0 127 92.9
Lsat_1_v5_gn_4_39621 Lactuca sativa HOM05D003666 ORTHO05D004770 5.6e-58 227.6 129 91.5
Lalb_Chr06g0172221 Lupinus albus HOM05D003666 ORTHO05D004770 9.5e-58 226.9 135 88.9
HanXRQMTg0579201 Helianthus annuus HOM05D003666 ORTHO05D004770 2.8e-57 225.3 129 89.9
Nitab4.5_0006085g0010 Nicotiana tabacum HOM05D003666 ORTHO05D004770 6.8e-56 220.7 132 84.8
HanXRQChr02g0045121 Helianthus annuus HOM05D003666 ORTHO05D004770 1.5e-55 219.5 129 88.4
Lalb_Chr06g0172341 Lupinus albus HOM05D003666 ORTHO05D004770 2.0e-55 219.2 131 87.8
Psat4g185400 Pisum sativum HOM05D003666 ORTHO05D004770 5.8e-55 217.6 134 83.6
Gohir.D09G016300 Gossypium hirsutum HOM05D003666 ORTHO05D004770 1.4e-53 213.0 127 88.2
SEGI_24024 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 8.1e-49 197.2 133 77.4
SEGI_34311 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 8.1e-49 197.2 133 77.4
Gohir.A12G076865 Gossypium hirsutum HOM05D003666 ORTHO05D004770 2.6e-47 192.2 109 91.7
Hma1.2p1_0257F.1_g103600 Hydrangea macrophylla HOM05D003666 ORTHO05D004770 2.9e-46 188.7 104 94.2
Nitab4.5_0000172g1740 Nicotiana tabacum HOM05D003666 ORTHO05D004770 4.9e-46 188.0 133 75.2
Peaxi162Scf01767g00002 Petunia axillaris HOM05D003666 ORTHO05D004770 2.7e-44 182.2 96 97.9
Nitab4.5_0001788g0230 Nicotiana tabacum HOM05D003666 ORTHO05D004770 7.8e-44 180.6 100 95.0
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 1.0e-43 180.3 114 81.6
Lsat_1_v5_gn_3_108200 Lactuca sativa HOM05D003666 ORTHO05D004770 7.3e-42 174.1 103 88.3
Thhalv10015949m.g Eutrema salsugineum HOM05D003666 ORTHO05D004770 1.8e-40 169.5 97 91.8
CAN.G1.7 Capsicum annuum HOM05D003666 ORTHO05D004770 5.1e-35 151.4 84 90.5
Peaxi162Scf00530g00005 Petunia axillaris HOM05D003666 ORTHO05D004770 1.1e-34 150.2 81 95.1
CAN.G85.17 Capsicum annuum HOM05D003666 ORTHO05D004770 2.1e-33 146.0 84 90.5
TPR.G18511 Trifolium pratense HOM05D003666 ORTHO05D004770 1.1e-32 143.7 86 87.2
SHI21047 Sapria himalayana HOM05D003666 ORTHO05D004770 6.9e-32 141.0 95 81.1
CAN.G1001.36 Capsicum annuum HOM05D003666 ORTHO05D004770 8.9e-32 140.6 84 86.9
arahy.Tifrunner.gnm1.ann1.A5I0RB Arachis hypogaea HOM05D003666 ORTHO05D004770 2.9e-30 135.6 89 82.0
CSS0015485 Camellia sinensis var. sinensis HOM05D003666 ORTHO05D004770 2.3e-27 125.9 130 57.7
Sed0023789 Sechium edule HOM05D003666 ORTHO05D004770 5.1e-27 124.8 124 62.9
Haze_26858 Corylus avellana HOM05D000729 ORTHO05D001063 9.6e-26 120.6 128 49.2
BolC4t23491H Brassica oleracea HOM05D003666 ORTHO05D004770 2.0e-23 112.8 64 89.1
Peaxi162Scf00147g00311 Petunia axillaris HOM05D003666 ORTHO05D004770 7.6e-23 110.9 55 100.0
SalBow1G6983 Salvia bowleyana HOM05D003666 ORTHO05D004770 5.4e-21 104.8 105 59.0
Haze_27149 Corylus avellana HOM05D003666 ORTHO05D004770 1.1e-18 97.1 128 39.8
SMO053G0008 Selaginella moellendorffii HOM05D003666 ORTHO05D004770 1.1e-16 90.5 133 47.4
Oeu022812.1 Olea europaea HOM05D003666 ORTHO05D004770 2.4e-16 89.4 71 73.2
Lalb_Chr00c54g0413571 Lupinus albus HOM05D003666 ORTHO05D004770 4.0e-16 88.6 48 91.7
MELO3C030345.2 Cucumis melo HOM05D003666 ORTHO05D004770 2.6e-15 85.9 55 85.5
Solyc10g062000.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.7e-14 83.2 53 77.4
SHI36045 Sapria himalayana HOM05D003666 ORTHO05D004770 1.6e-12 76.6 40 87.5
SEGI_13011 Sequoiadendron giganteum HOM05D001200 ORTHO05D002731 2.5e-10 69.3 100 39.0
Solyc10g045765.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 5.3e-08 61.6 35 77.1
EL10As15g24100 Beta vulgaris HOM05D001200 ORTHO05D002731 9.0e-08 60.8 139 32.4
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 9.0e-08 60.8 139 32.4
TAR022G0002 Trochodendron aralioides HOM05D003666 ORTHO05D004770 1.2e-07 60.5 66 48.5
Peaxi162Scf00030g02118 Petunia axillaris HOM05D001200 ORTHO05D002731 1.5e-07 60.1 137 31.4
Nn064s42212 Nelumbo nucifera HOM05D001200 ORTHO05D002731 2.6e-07 59.3 137 31.4
PGSC0003DMG400020539 Solanum tuberosum HOM05D001200 ORTHO05D002731 2.6e-07 59.3 140 30.7
PGSC0003DMG401011339 Solanum tuberosum HOM05D001200 ORTHO05D002731 2.6e-07 59.3 140 30.7
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 3.4e-07 58.9 137 30.7
Medtr4g050950 Medicago truncatula HOM05D001200 ORTHO05D002731 3.4e-07 58.9 137 30.7
Lj2P1238T97 Lonicera japonica HOM05D001200 ORTHO05D002731 4.5e-07 58.5 137 30.7
SHI15673 Sapria himalayana HOM05D003666 ORTHO05D004770 4.5e-07 58.5 99 40.4
SEGI_03857 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 4.5e-07 58.5 50 64.0
Ciclev10013974m.g Citrus clementina HOM05D001200 ORTHO05D002731 5.8e-07 58.2 137 29.2
Ciclev10027631m.g Citrus clementina HOM05D001200 ORTHO05D002731 5.8e-07 58.2 137 29.2
Ciclev10027650m.g Citrus clementina HOM05D001200 ORTHO05D002731 5.8e-07 58.2 137 29.2
Gohir.1Z049731 Gossypium hirsutum HOM05D001200 ORTHO05D002731 1.0e-06 57.4 140 29.3
Gohir.A02G134201 Gossypium hirsutum HOM05D001200 ORTHO05D010401 1.0e-06 57.4 140 29.3
SHI01159 Sapria himalayana HOM05D003666 ORTHO05D004770 1.3e-06 57.0 55 56.4
DCAR_032536 Daucus carota HOM05D001200 ORTHO05D002731 2.2e-06 56.2 98 33.7
HanXRQChr00c0196g0572481 Helianthus annuus HOM05D001200 ORTHO05D002731 3.8e-06 55.5 143 30.1
HanXRQChr00c0690g0576761 Helianthus annuus HOM05D001200 ORTHO05D002731 3.8e-06 55.5 143 30.1
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 3.8e-06 55.5 143 30.1
HanXRQChr05g0152431 Helianthus annuus HOM05D001200 ORTHO05D002731 3.8e-06 55.5 143 30.1
HanXRQChr06g0183001 Helianthus annuus HOM05D001200 ORTHO05D002731 3.8e-06 55.5 143 30.1
HanXRQChr09g0258521 Helianthus annuus HOM05D001200 ORTHO05D002731 3.8e-06 55.5 143 30.1
HanXRQChr11g0323741 Helianthus annuus HOM05D001200 ORTHO05D002731 3.8e-06 55.5 143 30.1
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 3.8e-06 55.5 143 30.1
SalBow1G7634 Salvia bowleyana HOM05D001200 ORTHO05D002731 3.8e-06 55.5 137 29.9


User provided reference genes

Program Settings